cluster # 6054

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Oryza sativa
cluster # 6054 cluster # 6054 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6054#0 length = 1136 sequences # 2

consensus_6054#1 length = 370 sequences # 1

consensusID : consensus_6054#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1136
fasta sequence

                              [AATGTCGCACCAGATTCTCCACACCTCCAACCCCACGCTGCCGACGCCACCTCAGCCGCACAACCACCACCCGCCGGTGCCGCCACCGCCCAAGCTCGGTCGCCGCGCTGCGCTCGCCATCGCGGCCGCTCCGGCCATCCTCAGCGCCACACCCGCACCATCCAGAGCGCAGGAAGCAGCAGCCGCCGCCGCGGCGCCCTGCATCGCCGACCTGCCCGTCACCGCCAAGGCCTTCCTGGACGTGTCCATCGGCGGCGAGCCGGCGGGCCGCATCACCATCGGCTTCTTCGGCGACGCGGCCCCCGCCGGCGCGTCGCGCTTCCTGTCGCTCGTCACGGGCGTCGGCTACCGGCGCAAGGAGTTCGTCAAGATCGTGCCGGGCTACGTGCAGCACGGCGGCGTGGTGTCGTACCCGGCCATCCCGGCGGTGACCGAGCGGCTGGCGGCGGAGATGGGCGCCGTGCGGGCGCAATGCGGCGGGGAGAGGAGCCCGCACGCGGCGGCGGGGGCGGTGTCGATCGTGGTGAGGGACCCGAGCCTGCCGCCGCCCAAGCCCAAGCTGGTGGCGCGCGGCGGGAAGCTGGAGGTCGACCAGGAGCAGGTGGGCGTGGTGCCCAACGGCACCGAGTTCGTCATCACCACCGGCGACGCGCCGGAGCTGGACGCGTCGGCGCTGGTGGTCGGGAGGGTCGTGGACGGCATGGACGTCCTCGGCAAGATCGCAGCCGTGCCCACCGTCAAGGATAACACTGCCTCTCCATACTTCAGAGTAGCCAAGTTGATCGGGGACAAGAGAGCAGTGGTTGCAGAGCGAGGGTTCAACCGCCCATACACCAAGATCCTAATCACCAATTGTGGAGTCATTGAACAGCAGCAGGAGCAGTAGAGTGCTTTGTTTCTGCCTTGCCTTTCATGTCTCTAGTTTGTGCAAAGGGTAATTATTATTGGAACTCTGTTTGCAAGAGGATTTTGATTACTCATGGACTGATATAGGCTATGGAGAGGATTAAAAAGGATTGTGAAGAGATGAGAGTCTTTGTAAAACGCATGTCACACTGTGCTTACAGAACACCAACTTATGTTATTAAAAAGAGATGGAGGATATATTGACTAATTATCACTTGGGGGAAAAGCGG]

[+] EMBL AK065672             [AATGTCGCACCAGATTCTCCACACCTCCAACCCCACGCTGCCGACGCCACCTCAGCCGCACAACCACCACCCGCCGGTGCCGCCACCGCCCAAGCTCGGTCGCCGCGCTGCGCTCGCCATCGCGGCCGCTCCGGCCATCCTCAGCGCCACACCCGCACCATCCAGAGCGCAGGAAGCAGCAGCCGCCGCCGCGGCGCCCTGCATCGCCGACCTGCCCGTCACCGCCAAGGCCTTCCTGGACGTGTCCATCGGCGGCGAGCCGGCGGGCCGCATCACCATCGGCTTCTTCGGCGACGCGGCCCCCGCCGGCGCGTCGCGCTTCCTGTCGCTCGTCACGGGCGTCGGCTACCGGCGCAAGGAGTTCGTCAAGATCGTGCCGGGCTACGTGCAGCACGGCGGCGTGGTGTCGTACCCGGCCATCCCGGCGGTGACCGAGCGGCTGGCGGCGGAGATGGGCGCCGTGCGGGCGCAATGCGGCGGGGAGAGGAGCCCGCACGCGGCGGCGGGGGCGGTGTCGATCGTGGTGAGGGACCCGAGCCTGCCGCCGCCCAAGCCCAAGCTGGTGGCGCGCGGCGGGAAGCTGGAGGTCGACCAGGAGCAGGTGGGCGTGGTGCCCAACGGCACCGAGTTCGTCATCACCACCGGCGACGCGCCGGAGCTGGACGCGTCGGCGCTGGTGGTCGGGAGGGTCGTGGACGGCATGGACGTCCTCGGCAAGATCGCAGCCGTGCCCACCGTCAAGGATAACACTGCCTCTCCATACTTCAGAGTAGCCAAGTTGATCGGGGACAAGAGAGCAGTGGTTGCAGAGCGAGGGTTCAACCGCCCATACACCAAGATCCTAATCACCAATTGTGGAGTCATTGAACAGCAGCAGGAGCAGTAGAGTGCTTTGTTTCTGCCTTGCCTTTCATGTCTCTAGTTTGTGCAAAGGGTAATTATTATTGGAACTCTGTTTGCAAGAGGATTTTGATTACTCATGGACTGATATAGGCTATGGAGAGGATTAAAAAGGATTGTGAAGAGATGAGAGTCTTTGTAAAACGCATGTCACACTGTGCTTACAGAACACCAACTTATGTTATTAAAAAGAGATGGAGGA                                  ]
[+] EMBL AU225694             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gccgctAGCAGTGGTTGCAGAGCGAGGGTTCAACCGCCCATACACCAAGATCCTAATCACCAATTGTGGAGTCATTGAACAGCAGCAGGAGCAGTAGAGTGCTTTGTTTCTGCCTTGCCTTTCATGTCTCTAGTTTGTGCAAAGGGTAATTATTATTGGAACTCTGTTTGCAAGAGGATTTTGATTACTCATGGACTGATATAGGCGATGGAGAGGATTAAAAAGGATTGTGAAGAGATGAGAGTCTTTGTAAAACGCATGTCACACTGTGCTTACAGAACACCAACTTATGTTATTAAAAAGAGATGGAGGATATATTGACTAATTATCACTTGGGGGAAAAGCGG]




>consensus_6054#0
AATGTCGCACCAGATTCTCCACACCTCCAACCCCACGCTGCCGACGCCACCTCAGCCGCA
CAACCACCACCCGCCGGTGCCGCCACCGCCCAAGCTCGGTCGCCGCGCTGCGCTCGCCAT
CGCGGCCGCTCCGGCCATCCTCAGCGCCACACCCGCACCATCCAGAGCGCAGGAAGCAGC
AGCCGCCGCCGCGGCGCCCTGCATCGCCGACCTGCCCGTCACCGCCAAGGCCTTCCTGGA
CGTGTCCATCGGCGGCGAGCCGGCGGGCCGCATCACCATCGGCTTCTTCGGCGACGCGGC
CCCCGCCGGCGCGTCGCGCTTCCTGTCGCTCGTCACGGGCGTCGGCTACCGGCGCAAGGA
GTTCGTCAAGATCGTGCCGGGCTACGTGCAGCACGGCGGCGTGGTGTCGTACCCGGCCAT
CCCGGCGGTGACCGAGCGGCTGGCGGCGGAGATGGGCGCCGTGCGGGCGCAATGCGGCGG
GGAGAGGAGCCCGCACGCGGCGGCGGGGGCGGTGTCGATCGTGGTGAGGGACCCGAGCCT
GCCGCCGCCCAAGCCCAAGCTGGTGGCGCGCGGCGGGAAGCTGGAGGTCGACCAGGAGCA
GGTGGGCGTGGTGCCCAACGGCACCGAGTTCGTCATCACCACCGGCGACGCGCCGGAGCT
GGACGCGTCGGCGCTGGTGGTCGGGAGGGTCGTGGACGGCATGGACGTCCTCGGCAAGAT
CGCAGCCGTGCCCACCGTCAAGGATAACACTGCCTCTCCATACTTCAGAGTAGCCAAGTT
GATCGGGGACAAGAGAGCAGTGGTTGCAGAGCGAGGGTTCAACCGCCCATACACCAAGAT
CCTAATCACCAATTGTGGAGTCATTGAACAGCAGCAGGAGCAGTAGAGTGCTTTGTTTCT
GCCTTGCCTTTCATGTCTCTAGTTTGTGCAAAGGGTAATTATTATTGGAACTCTGTTTGC
AAGAGGATTTTGATTACTCATGGACTGATATAGGCTATGGAGAGGATTAAAAAGGATTGT
GAAGAGATGAGAGTCTTTGTAAAACGCATGTCACACTGTGCTTACAGAACACCAACTTAT
GTTATTAAAAAGAGATGGAGGATATATTGACTAATTATCACTTGGGGGAAAAGCGG

consensusID : consensus_6054#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [CGAGGCAACGCATATNCCAAATCGCCATCCTTGCGATGTGATGCGATGCGATGCAGCTCTCACCTCTCGTCTCGCCAGCAATGTCGCACCAGATTCTCCACACCTCCAACCCCACGCTGCCGACGSCACCTCAGCCGCACAACCACCACCCGCCGGTGCCGCCACCGCCCAAGYTCGGTCGCCGCGCTGCGCTCGCCATCGCGGCCGCTCCGGCCATCCTCAGCGCCACACCCGCACCATCCAGAGCGCAGGAGCAGCAGCCGCCGCGSGGGSCCTTGCATCGCCGACCTGCCGTCACCGCAAAGGCTTTCTGGGCGGTCCATYTGGSGGCGAGCGCGCGGGCCCGATWAACATYGGCCTTTTYGCGCGG]

[+] EMBL BE229400             [CGAGGCAACGCATATNCCAAATCGCCATCCTTGCGATGTGATGCGATGCGATGCAGCTCTCACCTCTCGTCTCGCCAGCAATGTCGCACCAGATTCTCCACACCTCCAACCCCACGCTGCCGACGSCACCTCAGCCGCACAACCACCACCCGCCGGTGCCGCCACCGCCCAAGYTCGGTCGCCGCGCTGCGCTCGCCATCGCGGCCGCTCCGGCCATCCTCAGCGCCACACCCGCACCATCCAGAGCGCAGGAGCAGCAGCCGCCGCGSGGGSCCTTGCATCGCCGACCTGCCGTCACCGCAAAGGCTTTCTGGGCGGTCCATYTGGSGGCGAGCGCGCGGGCCCGATWAACATYGGCCTTTTYGCGCGG]




>consensus_6054#1
CGAGGCAACGCATATNCCAAATCGCCATCCTTGCGATGTGATGCGATGCGATGCAGCTCT
CACCTCTCGTCTCGCCAGCAATGTCGCACCAGATTCTCCACACCTCCAACCCCACGCTGC
CGACGSCACCTCAGCCGCACAACCACCACCCGCCGGTGCCGCCACCGCCCAAGYTCGGTC
GCCGCGCTGCGCTCGCCATCGCGGCCGCTCCGGCCATCCTCAGCGCCACACCCGCACCAT
CCAGAGCGCAGGAGCAGCAGCCGCCGCGSGGGSCCTTGCATCGCCGACCTGCCGTCACCG
CAAAGGCTTTCTGGGCGGTCCATYTGGSGGCGAGCGCGCGGGCCCGATWAACATYGGCCT
TTTYGCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6054#0      ------------------------------------------------------------
consensus_6054#1      CGAGGCAACGCATATNCCAAATCGCCATCCTTGCGATGTGATGCGATGCGATGCAGCTCT 60
                                                                                  

consensus_6054#0      -------------------AATGTCGCACCAGATTCTCCACACCTCCAACCCCACGCTGC 41
consensus_6054#1      CACCTCTCGTCTCGCCAGCAATGTCGCACCAGATTCTCCACACCTCCAACCCCACGCTGC 120
                                         *****************************************

consensus_6054#0      CGACGCCACCTCAGCCGCACAACCACCACCCGCCGGTGCCGCCACCGCCCAAGCTCGGTC 101
consensus_6054#1      CGACGSCACCTCAGCCGCACAACCACCACCCGCCGGTGCCGCCACCGCCCAAGYTCGGTC 180
                      ***** *********************************************** ******

consensus_6054#0      GCCGCGCTGCGCTCGCCATCGCGGCCGCTCCGGCCATCCTCAGCGCCACACCCGCACCAT 161
consensus_6054#1      GCCGCGCTGCGCTCGCCATCGCGGCCGCTCCGGCCATCCTCAGCGCCACACCCGCACCAT 240
                      ************************************************************

consensus_6054#0      CCAGAGCGCAGGAAGCAGCAGCCGCCGCCGCGGCGCCCTGCATCGCCGACCTGCCCGTCA 221
consensus_6054#1      CCAGAGCGCAGGA-GCAGCAGCCGCCGC-GSGGGSCCTTGCATCGCCGACCTGCC-GTCA 297
                      ************* ************** * **  ** ***************** ****

consensus_6054#0      CCGCCAAGGCCTTCCTGGACGTGTCCATC-GGCGGCGAGCCGGCGGGCCGCATCACCATC 280
consensus_6054#1      CCGCAAAGGCTTTC-TGGGCG-GTCCATYTGGSGGCGAGCGCGCGGGCCCGATWAACATY 355
                      **** ***** *** *** ** ******  ** *******  *******  ** * *** 

consensus_6054#0      GGCTTCTTCGGCGACGCGGCCCCCGCCGGCGCGTCGCGCTTCCTGTCGCTCGTCACGGGC 340
consensus_6054#1      GGCCTTTTYG----CGCGG----------------------------------------- 370
                      *** * ** *    *****                                         

consensus_6054#0      GTCGGCTACCGGCGCAAGGAGTTCGTCAAGATCGTGCCGGGCTACGTGCAGCACGGCGGC 400
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      GTGGTGTCGTACCCGGCCATCCCGGCGGTGACCGAGCGGCTGGCGGCGGAGATGGGCGCC 460
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      GTGCGGGCGCAATGCGGCGGGGAGAGGAGCCCGCACGCGGCGGCGGGGGCGGTGTCGATC 520
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      GTGGTGAGGGACCCGAGCCTGCCGCCGCCCAAGCCCAAGCTGGTGGCGCGCGGCGGGAAG 580
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      CTGGAGGTCGACCAGGAGCAGGTGGGCGTGGTGCCCAACGGCACCGAGTTCGTCATCACC 640
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      ACCGGCGACGCGCCGGAGCTGGACGCGTCGGCGCTGGTGGTCGGGAGGGTCGTGGACGGC 700
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      ATGGACGTCCTCGGCAAGATCGCAGCCGTGCCCACCGTCAAGGATAACACTGCCTCTCCA 760
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      TACTTCAGAGTAGCCAAGTTGATCGGGGACAAGAGAGCAGTGGTTGCAGAGCGAGGGTTC 820
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      AACCGCCCATACACCAAGATCCTAATCACCAATTGTGGAGTCATTGAACAGCAGCAGGAG 880
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      CAGTAGAGTGCTTTGTTTCTGCCTTGCCTTTCATGTCTCTAGTTTGTGCAAAGGGTAATT 940
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      ATTATTGGAACTCTGTTTGCAAGAGGATTTTGATTACTCATGGACTGATATAGGCTATGG 1000
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      AGAGGATTAAAAAGGATTGTGAAGAGATGAGAGTCTTTGTAAAACGCATGTCACACTGTG 1060
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      CTTACAGAACACCAACTTATGTTATTAAAAAGAGATGGAGGATATATTGACTAATTATCA 1120
consensus_6054#1      ------------------------------------------------------------
                                                                                  

consensus_6054#0      CTTGGGGGAAAAGCGG 1136
consensus_6054#1      ----------------