cluster # 607

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Oryza sativa
cluster # 607 cluster # 607 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_607#0 length = 654 sequences # 1

consensus_607#1 length = 640 sequences # 1

consensusID : consensus_607#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [GCATCAGCAGCAGCAAGAGTCCTCAACGTACTCATCGTCCACGCGTACGCACGCACGTACTCTAGCAGCCTAGCAGGCAGAAGCCACGAGCAGCCAGAGCTTAGCCAGCCATGGAAGAGGACGAGATGAGGATGAGAGAGAAGCTGGCCACGATGGACGAGAGGCAGGCGATGGCGATGCGGCTCACCTGGATCTCTGAGCTCGTCGCCAGCAACAAGAAGTCGATCGCCGGCAACAAGGCCTACATCCTGGCCCTGATCGACGCCATCGACAACGACCGGTGCCCGTACACCGCCGCCGAGCTCTCCGACAAGATCCGCGAGCTCCGGGAGGACAGGGTGACCGTCATCAAGACGATGATCGACTCGGTGCGAGCAGCTACGCCCGCCGCCGGCGGCGATGGTGGTACTCGTCGTCGTGGCGCCGACGACAACTCCGGTGCCATTGGCTGTGGCCCAACTCACCAGTCGCGGACGATCAGCCGGTAGAGTATGTAATTAGGATATATGTAACCCATCGCTGTCGATTTAATTTAGCCAGGAGTAGTTTCTTTTTTCAATTACATACTCTACCATGCAATGAAGGGTGTGTTTAGTTCACACCAATATCGAAATTTTGGTTGAAATTGAAATGATGTGATGGAAAGCTGAAAGT]

[+] EMBL AK063063             [GCATCAGCAGCAGCAAGAGTCCTCAACGTACTCATCGTCCACGCGTACGCACGCACGTACTCTAGCAGCCTAGCAGGCAGAAGCCACGAGCAGCCAGAGCTTAGCCAGCCATGGAAGAGGACGAGATGAGGATGAGAGAGAAGCTGGCCACGATGGACGAGAGGCAGGCGATGGCGATGCGGCTCACCTGGATCTCTGAGCTCGTCGCCAGCAACAAGAAGTCGATCGCCGGCAACAAGGCCTACATCCTGGCCCTGATCGACGCCATCGACAACGACCGGTGCCCGTACACCGCCGCCGAGCTCTCCGACAAGATCCGCGAGCTCCGGGAGGACAGGGTGACCGTCATCAAGACGATGATCGACTCGGTGCGAGCAGCTACGCCCGCCGCCGGCGGCGATGGTGGTACTCGTCGTCGTGGCGCCGACGACAACTCCGGTGCCATTGGCTGTGGCCCAACTCACCAGTCGCGGACGATCAGCCGGTAGAGTATGTAATTAGGATATATGTAACCCATCGCTGTCGATTTAATTTAGCCAGGAGTAGTTTCTTTTTTCAATTACATACTCTACCATGCAATGAAGGGTGTGTTTAGTTCACACCAATATCGAAATTTTGGTTGAAATTGAAATGATGTGATGGAAAGCTGAAAGT]




>consensus_607#0
GCATCAGCAGCAGCAAGAGTCCTCAACGTACTCATCGTCCACGCGTACGCACGCACGTAC
TCTAGCAGCCTAGCAGGCAGAAGCCACGAGCAGCCAGAGCTTAGCCAGCCATGGAAGAGG
ACGAGATGAGGATGAGAGAGAAGCTGGCCACGATGGACGAGAGGCAGGCGATGGCGATGC
GGCTCACCTGGATCTCTGAGCTCGTCGCCAGCAACAAGAAGTCGATCGCCGGCAACAAGG
CCTACATCCTGGCCCTGATCGACGCCATCGACAACGACCGGTGCCCGTACACCGCCGCCG
AGCTCTCCGACAAGATCCGCGAGCTCCGGGAGGACAGGGTGACCGTCATCAAGACGATGA
TCGACTCGGTGCGAGCAGCTACGCCCGCCGCCGGCGGCGATGGTGGTACTCGTCGTCGTG
GCGCCGACGACAACTCCGGTGCCATTGGCTGTGGCCCAACTCACCAGTCGCGGACGATCA
GCCGGTAGAGTATGTAATTAGGATATATGTAACCCATCGCTGTCGATTTAATTTAGCCAG
GAGTAGTTTCTTTTTTCAATTACATACTCTACCATGCAATGAAGGGTGTGTTTAGTTCAC
ACCAATATCGAAATTTTGGTTGAAATTGAAATGATGTGATGGAAAGCTGAAAGT

consensusID : consensus_607#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [GGCATCAGCAGCAGCAAGAGTCCTCAACGTACTCATCGTCCACGCGTACGCACGCACGTACTCTAGCAGCCTAGCAGGCAGAAGCCACGAGCAGCCAGAGCTTAGCCAGCCATGGAAGAGGACGAGATGAGGATGAGAGAGAAGCTGGCCACGATGGACGAGAGGCAGGCGATGGCGATGCGGCTCACCTGGATCTCTGAGCTCGTCGCCAGCAACAAGAAGTCGATCGCCGGCAACAAGGCCTACATCCTGGCCCTGATCGACGCCATCGACAACGACCGGTGCCCGTACACCGCCGCCGAGCTCTCCGACAAGATCCGCGAGCTCCGGGAGGACAGGGTGACCGTCATCCTCCCCGCGCAGGCTGTCATCAAGACGATGATCGACTCGGTGCGAGCAGCTACGCCCGCCGCCGGCGGCGATGGTGGTACTCGTCGTCGTGGCGCCGACGACAACTCCGGTGCCATTGGCTGTGGCCCAACTCACCAGTCGCGGACGATCAGCCGGTAGAGTATGTAATTAGGATATATGTAACCCATCGCTGTCGATTTAATTTAGCCAGGAGTAGTTTCTTTTTTCAATTACATACTCTACCATGCAATGAAGGGTGTGTTTAGTTCACACCAATATCGAAATTTTG]

[+] EMBL AK069662             [GGCATCAGCAGCAGCAAGAGTCCTCAACGTACTCATCGTCCACGCGTACGCACGCACGTACTCTAGCAGCCTAGCAGGCAGAAGCCACGAGCAGCCAGAGCTTAGCCAGCCATGGAAGAGGACGAGATGAGGATGAGAGAGAAGCTGGCCACGATGGACGAGAGGCAGGCGATGGCGATGCGGCTCACCTGGATCTCTGAGCTCGTCGCCAGCAACAAGAAGTCGATCGCCGGCAACAAGGCCTACATCCTGGCCCTGATCGACGCCATCGACAACGACCGGTGCCCGTACACCGCCGCCGAGCTCTCCGACAAGATCCGCGAGCTCCGGGAGGACAGGGTGACCGTCATCCTCCCCGCGCAGGCTGTCATCAAGACGATGATCGACTCGGTGCGAGCAGCTACGCCCGCCGCCGGCGGCGATGGTGGTACTCGTCGTCGTGGCGCCGACGACAACTCCGGTGCCATTGGCTGTGGCCCAACTCACCAGTCGCGGACGATCAGCCGGTAGAGTATGTAATTAGGATATATGTAACCCATCGCTGTCGATTTAATTTAGCCAGGAGTAGTTTCTTTTTTCAATTACATACTCTACCATGCAATGAAGGGTGTGTTTAGTTCACACCAATATCGAAATTTTG]




>consensus_607#1
GGCATCAGCAGCAGCAAGAGTCCTCAACGTACTCATCGTCCACGCGTACGCACGCACGTA
CTCTAGCAGCCTAGCAGGCAGAAGCCACGAGCAGCCAGAGCTTAGCCAGCCATGGAAGAG
GACGAGATGAGGATGAGAGAGAAGCTGGCCACGATGGACGAGAGGCAGGCGATGGCGATG
CGGCTCACCTGGATCTCTGAGCTCGTCGCCAGCAACAAGAAGTCGATCGCCGGCAACAAG
GCCTACATCCTGGCCCTGATCGACGCCATCGACAACGACCGGTGCCCGTACACCGCCGCC
GAGCTCTCCGACAAGATCCGCGAGCTCCGGGAGGACAGGGTGACCGTCATCCTCCCCGCG
CAGGCTGTCATCAAGACGATGATCGACTCGGTGCGAGCAGCTACGCCCGCCGCCGGCGGC
GATGGTGGTACTCGTCGTCGTGGCGCCGACGACAACTCCGGTGCCATTGGCTGTGGCCCA
ACTCACCAGTCGCGGACGATCAGCCGGTAGAGTATGTAATTAGGATATATGTAACCCATC
GCTGTCGATTTAATTTAGCCAGGAGTAGTTTCTTTTTTCAATTACATACTCTACCATGCA
ATGAAGGGTGTGTTTAGTTCACACCAATATCGAAATTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_607#0      -GCATCAGCAGCAGCAAGAGTCCTCAACGTACTCATCGTCCACGCGTACGCACGCACGTA 59
consensus_607#1      GGCATCAGCAGCAGCAAGAGTCCTCAACGTACTCATCGTCCACGCGTACGCACGCACGTA 60
                      ***********************************************************

consensus_607#0      CTCTAGCAGCCTAGCAGGCAGAAGCCACGAGCAGCCAGAGCTTAGCCAGCCATGGAAGAG 119
consensus_607#1      CTCTAGCAGCCTAGCAGGCAGAAGCCACGAGCAGCCAGAGCTTAGCCAGCCATGGAAGAG 120
                     ************************************************************

consensus_607#0      GACGAGATGAGGATGAGAGAGAAGCTGGCCACGATGGACGAGAGGCAGGCGATGGCGATG 179
consensus_607#1      GACGAGATGAGGATGAGAGAGAAGCTGGCCACGATGGACGAGAGGCAGGCGATGGCGATG 180
                     ************************************************************

consensus_607#0      CGGCTCACCTGGATCTCTGAGCTCGTCGCCAGCAACAAGAAGTCGATCGCCGGCAACAAG 239
consensus_607#1      CGGCTCACCTGGATCTCTGAGCTCGTCGCCAGCAACAAGAAGTCGATCGCCGGCAACAAG 240
                     ************************************************************

consensus_607#0      GCCTACATCCTGGCCCTGATCGACGCCATCGACAACGACCGGTGCCCGTACACCGCCGCC 299
consensus_607#1      GCCTACATCCTGGCCCTGATCGACGCCATCGACAACGACCGGTGCCCGTACACCGCCGCC 300
                     ************************************************************

consensus_607#0      GAGCTCTCCGACAAGATCCGCGAGCTCCGGGAGGACAGGGTGACCGTCATC--------- 350
consensus_607#1      GAGCTCTCCGACAAGATCCGCGAGCTCCGGGAGGACAGGGTGACCGTCATCCTCCCCGCG 360
                     ***************************************************         

consensus_607#0      ------------AAGACGATGATCGACTCGGTGCGAGCAGCTACGCCCGCCGCCGGCGGC 398
consensus_607#1      CAGGCTGTCATCAAGACGATGATCGACTCGGTGCGAGCAGCTACGCCCGCCGCCGGCGGC 420
                                 ************************************************

consensus_607#0      GATGGTGGTACTCGTCGTCGTGGCGCCGACGACAACTCCGGTGCCATTGGCTGTGGCCCA 458
consensus_607#1      GATGGTGGTACTCGTCGTCGTGGCGCCGACGACAACTCCGGTGCCATTGGCTGTGGCCCA 480
                     ************************************************************

consensus_607#0      ACTCACCAGTCGCGGACGATCAGCCGGTAGAGTATGTAATTAGGATATATGTAACCCATC 518
consensus_607#1      ACTCACCAGTCGCGGACGATCAGCCGGTAGAGTATGTAATTAGGATATATGTAACCCATC 540
                     ************************************************************

consensus_607#0      GCTGTCGATTTAATTTAGCCAGGAGTAGTTTCTTTTTTCAATTACATACTCTACCATGCA 578
consensus_607#1      GCTGTCGATTTAATTTAGCCAGGAGTAGTTTCTTTTTTCAATTACATACTCTACCATGCA 600
                     ************************************************************

consensus_607#0      ATGAAGGGTGTGTTTAGTTCACACCAATATCGAAATTTTGGTTGAAATTGAAATGATGTG 638
consensus_607#1      ATGAAGGGTGTGTTTAGTTCACACCAATATCGAAATTTTG-------------------- 640
                     ****************************************                    

consensus_607#0      ATGGAAAGCTGAAAGT 654
consensus_607#1      ----------------