|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 886 fasta sequence
[CCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAGGCTTATTGACGATCTTGGCCTACAAGGCAAACAGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAGCACCAACACTGATTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGTTGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAGATCCTGAGTCATTATCAATTCGTCATGCATTTCCAGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAAACTATCCACTAAGGGTGATTCAGTGAAGACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAATAAACGTGTGTCATTTTCATTTCA]
[+] EMBL CB657746 [CCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAGGCTTATTGACGATCTTGGCCTACAAGGCAAACAGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAGCACCAACACTGATTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGTTGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAGATCCTG ]
[+] EMBL CB678131 [ CCGCCTACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAGGCTTATTGACGATCTTGGCCTACAAGGCAAACAGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAGCACCAACACTGATTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGTTGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAGATCCTGAGTCATTATCAATTCGTCATGCATTTCCAGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAAACTATCCACTAAGGGTGATTCAGTGAAGACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAATAAACGTGTGTCATTTTCATTTCA]
consensusID : consensus_6338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 825 fasta sequence
[GACGAACCCCGCACAAGACAACAAGTAAATCCCCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCTCACCCGCTTCGC-GTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGGTGAGCGCGCTTTGGTGTGCCTCGCTGCTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGCTGCAAATGCTGCTTCTGTATATTTTGGATTGTGGCGCACTGGCGCTGCTGCGGCTATTTGAGGGCTGGAGCACACTAGCGAGTAGTGCTCCTTGGTGCGCAGGCTGAGGAAACTTGTGTTTGTGAACGAAATGCAAGCTGCTCACTAATGCAGACAGTTGTTCCTGCAAATGGAGAAGTGTTTTCTTCTGCATTCGTATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCATTGAACACCGTTATGTAACTTATCATAGCCTGATTCGATTTCATTCACCATGATCTATAACTATTATACTTACCACATTAGTTACTTTGTACTACTCTTAGTAAAATAAATAAATTATTTTAATA]
[+] EMBL C97940 [GACGAACCCCGCACAAGACAACAAGTAAATCCCCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCTCACCCGCTTCGC GTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGG ]
[+] EMBL AK108365 [ CTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCACCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGGTGAGCGCGCTTTGGTGTGCCTCGCTGCTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGCTGCAAATGCTGCTTCTGTATATTTTGGATTGTGGCGCACTGGCGCTGCTGCGGCTATTTGAGGGCTGGAGCACACTAGCGAGTAGTGCTCCTTGGTGCGCAGGCTGAGGAAACTTGTGTTTGTGAACGAAATGCAAGCTGCTCACTAATGCAGACAGTTGTTCCTGCAAATGGAGAAGTGTTTTCTTCTGCATTCGTATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCATTGAACACCGTTATGTAACTTATCATAGCCTGATTCGATTTCATTCACCATGATCTATAACTATTATACTTACCACATTAGTTACTTTGTACTACTCTTAGTAAAATAAATAAATTATTTTAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6338#0 --------------------------------CCATCCATAGCTATCCAAGAGCCCCAAA 28
consensus_6338#1 GACGAACCCCGCACAAGACAACAAGTAAATCCCCATCCATAGCTATCCAAGAGCCCCAAA 60
****************************
consensus_6338#0 TCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCG 88
consensus_6338#1 TCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCG 120
************************************************************
consensus_6338#0 CGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCATCCGCGCGCGCCGCACGGTT 148
consensus_6338#1 CGCCCACGCTCGCGCTCTCACCCGCTTCGCG-TCGCAGCATCCGCGCGCGCCGCACGGTT 179
***************** ************* ****************************
consensus_6338#0 CCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGT 208
consensus_6338#1 CCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGT 239
************************************************************
consensus_6338#0 CGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCA 268
consensus_6338#1 CGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCA 299
************************************************************
consensus_6338#0 GGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGG 328
consensus_6338#1 GGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGG 359
************************************************************
consensus_6338#0 CGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAG 388
consensus_6338#1 CGGGTTCATCTGGGACGAAGGGGCCAACACCATGGT-GAGCGCGCTTTGGTGT------G 412
********************************** *** * * **** * *
consensus_6338#0 GCTTATTGACGATCTTGGCCTACAAGG-CAAACAGCAGTATCCTAACTCACAACACAAGC 447
consensus_6338#1 CCTCGCTGCTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGC--TGCAAAT 470
** ** * ** * **** * * * * ** * * ***
consensus_6338#0 GTTACAT-TGTCAAAGATGGAGCACCA-ACACTGATTCCCTCAGATCCCATTGCGCTCAT 505
consensus_6338#1 GCTGCTTCTGTATATTTTGGATTGTGGCGCACTGGCGCTGCTGCGGCTATTTGAGGGC-T 529
* * * * *** * **** ***** * * *** * * *
consensus_6338#0 GAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTA 565
consensus_6338#1 GGAGCACACTAGCGAGTAGTGCTCCTTGGTGCGCAGGCTGA----GGAAACTTGTGTTTG 585
* * **** * * ** ** *** **** * * * * *
consensus_6338#0 TGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGT 625
consensus_6338#1 TGAACGA---AATGCAAGCTGCTCACTAATGCAGACAGTTGTTCCTGCAAATG-GAGAAG 641
*** * * *** *** ** * * * ** * * ** ** ***
consensus_6338#0 TGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATC--CA 683
consensus_6338#1 TGTTTTCTTCTGCATTCGT-ATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCA 700
** **** ** * ** *** ** ** *** * **
consensus_6338#0 TTTGTGGCTGGAACA-AGCGGAGGAGATCCTGAGTCATTATCAATTCGTCATGCATTTCC 742
consensus_6338#1 TTGAACACCGTTATGTAACTTATCATAGCCTGATTCGATTTCA-TTCACCATGA---TCT 756
** * * * * * * * * ***** ** * *** *** **** **
consensus_6338#0 AGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAA 802
consensus_6338#1 ATAACTATTATACTTACCACATTAGTT--ACTTTGT-ACTACTCTTAGTAAAATAAATAA 813
* * *** * ** ** *** ** *** * * ** * * * **
consensus_6338#0 ACTATCCACTAAGGGTGATTCAGTGAAGACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAA 862
consensus_6338#1 ATTATTT--TAATA---------------------------------------------- 825
* *** ***
consensus_6338#0 TAAACGTGTGTCATTTTCATTTCA 886
consensus_6338#1 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||