cluster # 6382

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Oryza sativa
cluster # 6382 cluster # 6382 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6382#0 length = 412 sequences # 3

consensus_6382#1 length = 410 sequences # 1

consensusID : consensus_6382#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 412
fasta sequence

                              [AGGCGGCGGCGCAACGAAGACGCGGCGCGCGGCGGGCGGCGCGACCCGAAGGCGACGGCGACGGCGACAGCACGGCTCTCTCATCCGGCCGCCACCTTCTTTCCGTCACAGAAGGCTATAGTTCGTCATTTGGAGCAATCACTGATGTTGGATTTTATGTAATTAAAATGTGATGGTAGCAGCTTCATGAAGTACTTAAACTCTCATTTTGGGAGATCCTGGGAGAAGTTTGGGTTTTGTTGTGTATTTAGACTTAGCTAGTGCAGCCTGTTTTGAGTTTGCTATGTGAGATATTTGGAAAGTGAAAATAATTGTATTTATTACGCAACCCTCCTACTACACGAAGTAGTCTAAGAGGGTCCCATAATCGTATAAAAGTGGAGACACAAAGTTTAGGGGTGAAAAAAAAAAA]

[+] EMBL AK063877             [AGGCGGCGGCGCAACGAAGACGCGGCGCGCGGCGGGCGGCGCGACCCGAAGGCGACGGCGACGGCGACAGCACGGCTCTCTCATCCGGCCGCCACCTTCTTTCCGTCACAGAAGGCTATAGTTCGTCATTTGGAGCAATCACTGATGTTGGATTTTATGTAATTAAAATGTGATGGTAGCAGCTTCATGAAGTACTTAAACTCTCATTTTGGGAGATCCTGGGAGAAGTTTGGGTTTTGTTGTGTATTTAGACTTAGCTAGTGCAGCCTGTTTTGAGTTTGCTATGTGAGATATTTGGAAAGTGAAAATAATTGTATTTATTACGCAACCCTCCTACTACACGAAGTAGTCTAAGAGGGTCCCATAATCGTATAAAAGTGGAGACACAAAG                     ]
[+] EMBL AU082114             [          GCAACGAAGACGCGGCG GCGGCGGGCGGCGCGACCCGAA GCGACGGCGACGGCGACA NACGGCTCTCTCATCCGGCCGCCACCTTCTTTCCGTCACAGAAGGCTATAGTTCGTCATTTGGAGCAATCACTGATGTTGGATTTTATGTAATTAAAATGTGATGGTAGCAGCTTCATGAAGTACTTAAACTCTCATTTTGGGAGATCCTGGGAGAAGTTTGGGTTTTNTTGTGTATTTAGACTTAGCTAGTGCAGCCTGTTTTNAGTTTGCTATGTGAGATATTTGGAAAGTGAAAATAATTGTATTTATTACGCAACCCTCCTACTACACG AGTAGTCTAAGAGGGTCCCATAATCGTATAAAAGTGGAGACACAAAGTTTAGGGGTGAAAA       ]
[+] EMBL AU077428             [                                                                                                                                           CACTGATGTTGGATTTTATGTAATTAAAATGTGATGGTAGCAGCTTCATGAAGTACTTAAACTCTCATTTTGGGAGATCCTGGGAGAAGTTTGGGTTTTGTTGTGTATTTAGNCTTAGCTAGTGCAGCCTGTTTTGAGTTTGCTATGTGAGATATTTGGAAAGTGAAAATAATTGTATTTATTACGCAACCCTCCTACTACACGAAGTAGTCTAAGAGGGTCCCATAATCGTATAAAAGTGGAGACACAAAGTTTAGGGGTGAAAAAAAAAAA]




>consensus_6382#0
AGGCGGCGGCGCAACGAAGACGCGGCGCGCGGCGGGCGGCGCGACCCGAAGGCGACGGCG
ACGGCGACAGCACGGCTCTCTCATCCGGCCGCCACCTTCTTTCCGTCACAGAAGGCTATA
GTTCGTCATTTGGAGCAATCACTGATGTTGGATTTTATGTAATTAAAATGTGATGGTAGC
AGCTTCATGAAGTACTTAAACTCTCATTTTGGGAGATCCTGGGAGAAGTTTGGGTTTTGT
TGTGTATTTAGACTTAGCTAGTGCAGCCTGTTTTGAGTTTGCTATGTGAGATATTTGGAA
AGTGAAAATAATTGTATTTATTACGCAACCCTCCTACTACACGAAGTAGTCTAAGAGGGT
CCCATAATCGTATAAAAGTGGAGACACAAAGTTTAGGGGTGAAAAAAAAAAA

consensusID : consensus_6382#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [AGGCGGCGGCGGGAGCGGCGCGCGGCGCGACCCGACGGCGACAGCGACGGCGACAGCACGGCTCTCTCATCCGGCCGCCACCTTCTCTCCGAAGGCTATAGTTCGTCATTTGGAGCAATCACTGATGTTGTATTTTATGTGATTAAAATGTGATGGTAGCAGCTTCATGAAGTACTTAAACTCTCATTTTGGGATACCCTAGGAGAAGTTTGGGTTTTGTTGTGTATTTAGACTTCGCTAGTGCAACCTGTTTTGAGTTTGCTATGTGAGATACTTGGAAAGTGAAAAGAATGTTTGCGATGTGCTCCTTGCTTGAAGAAACAGACGCATACACTGTTATCTTCACTGTTATGTGTACGACTTAAAAACATCAAACTGTCATCCTTGTTGCATGCATGAATGACACGGTT]

[+] EMBL AK063851             [AGGCGGCGGCGGGAGCGGCGCGCGGCGCGACCCGACGGCGACAGCGACGGCGACAGCACGGCTCTCTCATCCGGCCGCCACCTTCTCTCCGAAGGCTATAGTTCGTCATTTGGAGCAATCACTGATGTTGTATTTTATGTGATTAAAATGTGATGGTAGCAGCTTCATGAAGTACTTAAACTCTCATTTTGGGATACCCTAGGAGAAGTTTGGGTTTTGTTGTGTATTTAGACTTCGCTAGTGCAACCTGTTTTGAGTTTGCTATGTGAGATACTTGGAAAGTGAAAAGAATGTTTGCGATGTGCTCCTTGCTTGAAGAAACAGACGCATACACTGTTATCTTCACTGTTATGTGTACGACTTAAAAACATCAAACTGTCATCCTTGTTGCATGCATGAATGACACGGTT]




>consensus_6382#1
AGGCGGCGGCGGGAGCGGCGCGCGGCGCGACCCGACGGCGACAGCGACGGCGACAGCACG
GCTCTCTCATCCGGCCGCCACCTTCTCTCCGAAGGCTATAGTTCGTCATTTGGAGCAATC
ACTGATGTTGTATTTTATGTGATTAAAATGTGATGGTAGCAGCTTCATGAAGTACTTAAA
CTCTCATTTTGGGATACCCTAGGAGAAGTTTGGGTTTTGTTGTGTATTTAGACTTCGCTA
GTGCAACCTGTTTTGAGTTTGCTATGTGAGATACTTGGAAAGTGAAAAGAATGTTTGCGA
TGTGCTCCTTGCTTGAAGAAACAGACGCATACACTGTTATCTTCACTGTTATGTGTACGA
CTTAAAAACATCAAACTGTCATCCTTGTTGCATGCATGAATGACACGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6382#0      AGGCGGCGGCGCAACGAAGACGCGGCGCGCGGCGGGCGGCGCGACCCGAAGGCGACGGCG 60
consensus_6382#1      --------------AGGCGGCGGCGGGAGCGGCGCGCGGCGCGACCCGACGGCGACAGCG 46
                                     *  * **  * * ****** ************** ****** ***

consensus_6382#0      ACGGCGACAGCACGGCTCTCTCATCCGGCCGCCACCTTCTTTCCGTCACAGAAGGCTATA 120
consensus_6382#1      ACGGCGACAGCACGGCTCTCTCATCCGGCCGCCACCTTCTCTCCG------AAGGCTATA 100
                      **************************************** ****      *********

consensus_6382#0      GTTCGTCATTTGGAGCAATCACTGATGTTGGATTTTATGTAATTAAAATGTGATGGTAGC 180
consensus_6382#1      GTTCGTCATTTGGAGCAATCACTGATGTTGTATTTTATGTGATTAAAATGTGATGGTAGC 160
                      ****************************** ********* *******************

consensus_6382#0      AGCTTCATGAAGTACTTAAACTCTCATTTTGGGAGATCCTGGGAGAAGTTTGGGTTTTGT 240
consensus_6382#1      AGCTTCATGAAGTACTTAAACTCTCATTTTGGGATACCCTAGGAGAAGTTTGGGTTTTGT 220
                      ********************************** * *** *******************

consensus_6382#0      TGTGTATTTAGACTTAGCTAGTGCAGCCTGTTTTGAGTTTGCTATGTGAGATATTTGGAA 300
consensus_6382#1      TGTGTATTTAGACTTCGCTAGTGCAACCTGTTTTGAGTTTGCTATGTGAGATACTTGGAA 280
                      *************** ********* *************************** ******

consensus_6382#0      AGTGAAAATAATTGTATTTATTACGCAACCCTCCT-ACTACACGAAGTAGTCTAAGAGGG 359
consensus_6382#1      AGTGAAAAGAAT-GTTTGCGATGTGCTCCTTGCTTGAAGAAACAGACGCATACACTGTTA 339
                      ******** *** ** *    *  **  *   * * *  * **  *    *  *      

consensus_6382#0      TCC-CATAATCGTATAAAAG---TGGAGACACAAAGTT----TAGGGGTGAAAAAAAAAA 411
consensus_6382#1      TCTTCACTGTTATGTGTACGACTTAAAAACATCAAACTGTCATCCTTGTTGCATGCATGA 399
                      **  **   *  * *  * *   *  * ***  **  *    *    **   *   *  *

consensus_6382#0      A---------- 412
consensus_6382#1      ATGACACGGTT 410
                      *