cluster # 6503

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Oryza sativa
cluster # 6503 cluster # 6503 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6503#0 length = 753 sequences # 3

consensus_6503#1 length = 279 sequences # 1

consensusID : consensus_6503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 753
fasta sequence

                              [TTTTTTTTTTTTTTTTGACTTAAAAGCAACTGTTATTTATTTTTCTCCTCAAATTAGGATAAAAAACATCAGTTCCTCTCTTTTTTTTCTCCTTAATTTAATGATCAAAAGCATCAGCTCTAAATGTGCTAGATGATACAATAACGGGCACCAGAAATCAGGGATGAGATATCAACAGCCTGCAATTCTCTGAGCTGGAATCCTGCATGCAGTTACAAATTCATGTCCACCATGCCACATCAAGAACTTTTGGAGCTAGTGTTGTTAGATAGCCTGGCACTCAAAGAGGAAAAATGGTTACGAGGTTATATTGAGATTATAAGGTTGTATCCGAC-TTAATTTTAGCAGATACGCTGATTCCTACTCCCTCCATTTTCTTTAGTATATAATACCGGTTGATTTTTAGACATATATTTGATCATTCATGTTATTTATAAAATATGCAAACATCATTTATTTTATTATTAAAGTTACTTTAAATACAGTTTATATTTTTGCATATTAGCATATTTGT-TTTAAATAAGACGAATGGACATATATGTTTAAAAGTAAACAATACTATGTATTTAAAATGGAGATAGTATTAAA-GAGTATGTTCATGCAAGGTTCAGATAACCTTGTCTGTGGATTTATTGCCAACCGGGAAAAAACAGCAATAATTTCTATATTCATGGAACTGATTAAAAACTCTCAATCTAAGGATAACCAGCTTAAACCTGCAAATCGAACTGAAATTTACAATTATAATCTAAC]

[+] EMBL CA760995             [TTTTTTTTTTTTTTTTGACTTAAAAGCAACTGTTATTTATTTTTCTCCTCAAATTAGGATAAAAAACATCAGTTCCTCTCTTTTTTTTCTCCTTAATTTAATGATCAAAAGCATCAGCTCTAAATGTGCTAGATGATACAATAACGGGCACCAGAAATCAGGGATGAGATATCAACAGCCTGCAATTCTCTGAGCTGGAATCCTGCATGCAGTTACAAATTCATGTCCACCATGCCACATCAAGAACTTTTGGAGCTAGTGTTGTTAGATAGCCTGGCACTCAAAGAGGAAAAATGGTTACAAGGTTATATTGAGATTATAAGGTTGTATCCGAC TTAATTTTAGCAGATACGCTGATTCCTACTCCCTCCATTTTCTTTAGTATATAATACCGGTTGATTTTTAGACATATATTTGATCATTCATGTTATTTATAAAATATGCAAACATCATTTATTTTATTATTAAAGTTACTTTAAATACAGTTTATATTTTTGCATATTAGCATATTTGT TTTAAATAAGACGAATGGACATATATGTTTAAAAGTAAACAATACTATGTATTTAAAATGGAGATAGTATTAAA GAGTATGTTCATGCAAGGTTCAGATAACCTTGTCTGTGGATTTATTGCCAACCGGGAAAAAACAGCAATAATTTCTATATTCATGGAACTGATTAAAAACTCTC                                                             ]
[-] EMBL C99214               [      TTTTTTTAGTGACTTAAAAGCAACTGTTATTTATTTTTCTCCTCAGATTAGGATAAAAAACATCAGTTCCTCTCTTTTTTTTCTCCTTAATTTAATTATCAAAAGCATCAGCTCTAAATGTGCTAGATGATACAATAACGGGNACCAGAAATCAGGGATGAGATATCAACAGCCTGCAATTCTCTGAGCTGGAATCCTGCATGCAGTTACAAATTCATGTCCACCATGCCACATCAAGAACTTTTGGAGCTAGTGTTGTTAGATAGCCTGGCACTCAAAGAGGAAAAATGGGTACGAGGTNATATTGAGATTATAAGGNTGTATCCGACTTTAATTTTAGCAGATACGCTGATTCCTANTCCCTCCATTTTCTTTAGTATATAATGCC GTTGANTTTTAGACATATATTTGAGCATNCATGTGA TTAGAGAATATGCGAACATCATTTATTTTATTATTAAAGGNACTTTAAATACAG NTATATTTTTGCATATTAGCATATTTGTNTTTAAA AAGACGAATGGGCTTATATGTg                                                                                                                                                                                                                   ]
[+] EMBL CA760976             [                                                                                TTTTTTTTTT  TT  TTTAAGGATCAAAAGCATCAGCTCTAAATGTGCTAGATGATACAATAACGGGCACCAGAAATCAGGGATGAGATATCAACAGCCTGCAATTCTCTGAGCTGGAATCCTGCATGCAGTTACAAATTCATGTCCACCATGCCACATCAAGAACTTTTGGAGCTAGTGTTGTTAGATAGCCTGGCACTCAAAGAGGAAAAATGGTTACGAGGTTATATTGAGATTATAAGGTTGTATCCGAC TTAATTTTAGCAGATACGCTGATTCCTACTCCCTCCATTTTCTTTAGTATATAATACCCGTTGATTTTTAGACATATATTTGATCATTCATGTTATTTATAAAATATGCAAACATCATTTATTTTATTATTAAAGTTACTTTAAATACAGTTTATATTTTTGCATATTAGCATATTTGT TTTAAATAAGACGAATGGACATATATGTTTAAAAGTAAACAGTACTATGTATTTAAAATGGAGATAGTATTAAAGGAGTATGTTCATGCAAGGTTCAGATAACCTTGTCTGTGGATTTATT ACAACCGGGAAAAAACAGCAATAATTTCTATATTCATGGAACTGATTAAAAACTCTCAATCTAAGGATAACCAGCTTAAACCTGCAAATCGAACTGAAATTTACAATTATAATCTAAC]




>consensus_6503#0
TTTTTTTTTTTTTTTTGACTTAAAAGCAACTGTTATTTATTTTTCTCCTCAAATTAGGAT
AAAAAACATCAGTTCCTCTCTTTTTTTTCTCCTTAATTTAATGATCAAAAGCATCAGCTC
TAAATGTGCTAGATGATACAATAACGGGCACCAGAAATCAGGGATGAGATATCAACAGCC
TGCAATTCTCTGAGCTGGAATCCTGCATGCAGTTACAAATTCATGTCCACCATGCCACAT
CAAGAACTTTTGGAGCTAGTGTTGTTAGATAGCCTGGCACTCAAAGAGGAAAAATGGTTA
CGAGGTTATATTGAGATTATAAGGTTGTATCCGACTTAATTTTAGCAGATACGCTGATTC
CTACTCCCTCCATTTTCTTTAGTATATAATACCGGTTGATTTTTAGACATATATTTGATC
ATTCATGTTATTTATAAAATATGCAAACATCATTTATTTTATTATTAAAGTTACTTTAAA
TACAGTTTATATTTTTGCATATTAGCATATTTGTTTTAAATAAGACGAATGGACATATAT
GTTTAAAAGTAAACAATACTATGTATTTAAAATGGAGATAGTATTAAAGAGTATGTTCAT
GCAAGGTTCAGATAACCTTGTCTGTGGATTTATTGCCAACCGGGAAAAAACAGCAATAAT
TTCTATATTCATGGAACTGATTAAAAACTCTCAATCTAAGGATAACCAGCTTAAACCTGC
AAATCGAACTGAAATTTACAATTATAATCTAAC

consensusID : consensus_6503#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [TTTTTTTAGTGACTTAAAAGCAACTGTTATTTATTTTTCTCCTCAGATTAGGATAAAAAACATCAGTTCCTCTCTTTTTTTTCTCCCTAATTTAATTATCAAAAGCNTCAGCTTTTAATGGGCTAGANGATACCATAACCGGCCCCCGNAATTCNGGGTGGGATATTAACNGGCCCGCAATTNTNTGNGCCNGGAATCCGGCTGCCGTTCCAAATTTTGGGCCCCCTGCCCCATTAANAACTTTTGGGGCTAAGGGTNTTAAAAAACCCCGGCCCCCAA]

[-] EMBL AU172903             [TTTTTTTAGTGACTTAAAAGCAACTGTTATTTATTTTTCTCCTCAGATTAGGATAAAAAACATCAGTTCCTCTCTTTTTTTTCTCCCTAATTTAATTATCAAAAGCNTCAGCTTTTAATGGGCTAGANGATACCATAACCGGCCCCCGNAATTCNGGGTGGGATATTAACNGGCCCGCAATTNTNTGNGCCNGGAATCCGGCTGCCGTTCCAAATTTTGGGCCCCCTGCCCCATTAANAACTTTTGGGGCTAAGGGTNTTAAAAAACCCCGGCCCCCAA]




>consensus_6503#1
TTTTTTTAGTGACTTAAAAGCAACTGTTATTTATTTTTCTCCTCAGATTAGGATAAAAAA
CATCAGTTCCTCTCTTTTTTTTCTCCCTAATTTAATTATCAAAAGCNTCAGCTTTTAATG
GGCTAGANGATACCATAACCGGCCCCCGNAATTCNGGGTGGGATATTAACNGGCCCGCAA
TTNTNTGNGCCNGGAATCCGGCTGCCGTTCCAAATTTTGGGCCCCCTGCCCCATTAANAA
CTTTTGGGGCTAAGGGTNTTAAAAAACCCCGGCCCCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6503#0      TTTTTTTTTTTTTTTTGACTTAAAAGCAACTGTTATTTATTTTTCTCCTCAAATTAGGAT 60
consensus_6503#1      ------TTTTTTTAGTGACTTAAAAGCAACTGTTATTTATTTTTCTCCTCAGATTAGGAT 54
                            *******  ************************************ ********

consensus_6503#0      AAAAAACATCAGTTCCTCTCTTTTTTTTCTCCTTAATTTAATGATCAAAAGCATCAGCTC 120
consensus_6503#1      AAAAAACATCAGTTCCTCTCTTTTTTTTCTCCCTAATTTAATTATCAAAAGCNTCAGCTT 114
                      ******************************** ********* ********* ****** 

consensus_6503#0      TAAATGTGCTAGATGATACAATAACGGGCACCAGAAATCAGGGATGAGATATCAACAG-C 179
consensus_6503#1      TTAATGGGCTAGANGATACCATAACCGGCCCCCGNAATTCNGGGTGGGATATTAACNGGC 174
                      * **** ****** ***** ***** *** ** * ***   ** ** ***** *** * *

consensus_6503#0      CTGCAATTCTCTGAGCTGGAATCCTGCATGCAGTTACAAATTCATGTCCACCATGCCACA 239
consensus_6503#1      CCGCAATTNTNTGNGCCNGGAATCCGGCTGCCGTTCCAAATTT-TGGGCCCCCTGCCCCA 233
                      * ****** * ** **  * *  * *  *** *** ******  **  * ** **** **

consensus_6503#0      TCAAGAACTTTTGGAGCTAGTGTTGTTAGATAGCCT-GGCACTCAAAGAGGAAAAATGGT 298
consensus_6503#1      TTAANAACTTTTGGGGCTAAGGGTNTTAAAAAACCCCGGCCCCCAA-------------- 279
                      * ** ********* ****  * * *** * * **  *** * ***              

consensus_6503#0      TACGAGGTTATATTGAGATTATAAGGTTGTATCCGACTTAATTTTAGCAGATACGCTGAT 358
consensus_6503#1      ------------------------------------------------------------
                                                                                  

consensus_6503#0      TCCTACTCCCTCCATTTTCTTTAGTATATAATACCGGTTGATTTTTAGACATATATTTGA 418
consensus_6503#1      ------------------------------------------------------------
                                                                                  

consensus_6503#0      TCATTCATGTTATTTATAAAATATGCAAACATCATTTATTTTATTATTAAAGTTACTTTA 478
consensus_6503#1      ------------------------------------------------------------
                                                                                  

consensus_6503#0      AATACAGTTTATATTTTTGCATATTAGCATATTTGTTTTAAATAAGACGAATGGACATAT 538
consensus_6503#1      ------------------------------------------------------------
                                                                                  

consensus_6503#0      ATGTTTAAAAGTAAACAATACTATGTATTTAAAATGGAGATAGTATTAAAGAGTATGTTC 598
consensus_6503#1      ------------------------------------------------------------
                                                                                  

consensus_6503#0      ATGCAAGGTTCAGATAACCTTGTCTGTGGATTTATTGCCAACCGGGAAAAAACAGCAATA 658
consensus_6503#1      ------------------------------------------------------------
                                                                                  

consensus_6503#0      ATTTCTATATTCATGGAACTGATTAAAAACTCTCAATCTAAGGATAACCAGCTTAAACCT 718
consensus_6503#1      ------------------------------------------------------------
                                                                                  

consensus_6503#0      GCAAATCGAACTGAAATTTACAATTATAATCTAAC 753
consensus_6503#1      -----------------------------------