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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1272 fasta sequence
[TGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCATACCGAGCGTCAGTGGCACAAAAAGGAAGTGGTACATCGCGGTCAAGGCAAACTGTAAGCGCGACAGTTCGACTATATCTAACATCATGACTCCTTGCTCATCGCATGAAGACTCCGAGAGTGAACCCCGTTAGAAAGGGTCACACGCATGCCCCAATAGAAATTTGTTTGAACACTTTCATCATACCATGTGAATGCACACAAAAACGGCGTAAAGAAAGGTTGCAAACATGTTAATAAAAACTCAAATTGATCCCACGTATATATTACGCCGCAAAATCCTTACAATAAACAGGTTTTTGTTGAAGCAAATTTGCATTTTTCGACGGTGATCAATTTATAGCTAAATTACCGCCTTTCAGCCAATTTGATCGAGAACAATTTATCTCTTTTTGATGCCCATTTCCAAGACTTATACATTGATAAATATCAATTCCTACAAATTATGTTAATCATGTTTCAATAAGGTAACTTTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAAGATAAAAAGAGACGAAGCAAAAACAGCACGGTTGACCTTAATTCTTTTTTTGGTCACTGGCTAATACGACGCAGAGTTTCAGGATTACTAATAAAGGCATAAATCCACCCCGCCAATATTAACATTTAGTTAACTTATAATTATATTATAATTAACTCACCCAGGGTTATTATTTTGTTAAAAATAAAGCCACATATACGTGGCTTGAGAGTGAAGATAAACGCAAAATTACCTGATGCGCTACGCTTGCCAGTGTCTACATCATCTCTGCAATATATTGAATTTGCCTGCTTTTGTAGACCGAATAAAGCGT]
[+] EMBL CF339890 [TGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCATACCGAGCGTCAGTGGCACAAAAAGGAAGTGGTACATCGCGGTCAAGGCAAACTGTAAGCGCGACAGTTCGACTATATCTAACATCATGACTCCTTGCTCATCGCATGAAGACTCCGAGAGTGAACCCCGTTAGAAAGGGTCACACGCATGCCCCAATAGAAATTTGTTTGAACACTTTCATCATACCATGTGAATGCACACAAAAACGGCGTAAAGAAAGGTTGCAAACATGTTA ]
[+] EMBL CF340174 [TGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCATACCGAGCGTCAGTGGCACAAAAAGGAAGTGGTACATCGCGGTCAAGGCAAACTGTAAGCGCGACAGTTCGACTATATCTAACATCATGACTCCTTGCT ]
[+] EMBL CF306607 [ GTCACACGCATGCCCCAATAGAAATTTGTTTGAACACTTTCATCATACCATGTGAATGCACACAAAAACGGCGTAAAGAAAGGTTGCAAACATGTTAATAAAAACTCAAATTGATCCCACGTATATATTACGCCGCAAAATCCTTACAATAAACAGGTTTTTGTTGAAGCAAATTTGCATTTTTCGACGGTGATCAATTTATAGCTAAATTACCGCCTTTCAGCCAATTTGATCGAGAACAATTTATCTCTTTTTGATGCCCATTTCCAAGACTTATACATTGATAAATATCAATTCCTACAAATTATGTTAATCATGTTTCAATAAGGTAACTTTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAAGATAAAAAGAGACGAAGCAAAAACAGCACGGTTGACCTTAATTCTTTTTTTGGTCACTGGCTAATACGACGCAGAGTTTCAGGATTACTAATAAAGGCATAAATCCACCCCGCCAATATTAACATTTAGTTAACTTATAATTATATTATAATTAACTCACCCAGGGTTATTATTTTGTTAAAAATAAAGCCACATATACGTGGCTTGAGAGTGAAGATAAACGCAAAATTACCTGATGCGCTACGCTTGCCAGTGTCTACATCATCTCTGCAATATATTGAATTTGCCTGCTTTTGTAGACCGAATAAAGCGT]
consensusID : consensus_6566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[TTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTCGGTTTATCCCCGCTGNATATATTACGCCGCAAAATCCTTACAATAAACAGGTTTTTGTTGAAGCAAATTTGCATTTTTCGACGGTGATCAATTTATAGCTAAATTACCGCCTTTCAGCCAATTTGATCGAGAACAATTTATCTCTTTTTGATGCCCATTTCCAAGACTTATACATTGATAAATATCAATTCCTACAAATTATGTTAATCATGTTTCAATAAGGTAACTTTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAAGATAAAAAGAGACGAAGCAAAAACAGCACGGTTGACCTTAATTCTTTTTTTGGTCACTGGCTAATACGACGCAGAGTTTCAGGATTACTAATAAAGGCATAAATCCACCCCGCCAATATTAACATTTAGTTAACTTATAATTATATTATAATTAACTCACCCAGGGTTATTATTTTGTTAAAAATAAAGCCACATATACGTGGCTTGAGAGTGAAGATAAACGCAAAATTACCTGATGCGCTACGCTTGCCAGTGTCTACATCATCTCTGCAATATATTGAATTTGCCTGCTTTTGTAGACCGAATAAAGCGTTC]
[-] EMBL CF306234 [TTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTCGGTTTATCCCCGCTGNATATATTACGCCGCAAAATCCTTACAATAAACAGGTTTTTGTTGAAGCAAATTTGCATTTTTCGACGGTGATCAATTTATAGCTAAATTACCGCCTTTCAGCCAATTTGATCGAGAACAATTTATCTCTTTTTGATGCCCATTTCCAAGACTTATACATTGATAAATATCAATTCCTACAAATTATGTTAATCATGTTTCAATAAGGTAACTTTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAAGATAAAAAGAGACGAAGCAAAAACAGCACGGTTGACCTTAATTCTTTTTTTGGTCACTGGCTAATACGACGCAGAGTTTCAGGATTACTAATAAAGGCATAAATCCACCCCGCCAATATTAACATTTAGTTAACTTATAATTATATTATAATTAACTCACCCAGGGTTATTATTTTGTTAAAAATAAAGCCACATATACGTGGCTTGAGAGTGAAGATAAACGCAAAATTACCTGATGCGCTACGCTTGCCAGTGTCTACATCATCTCTGCAATATATTGAATTTGCCTGCTTTTGTAGACCGAATAAAGCGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6566#0 TGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACA 60
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 TTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCA 120
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 AAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCA 180
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 TACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAG 240
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 TCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTT 300
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 GCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTT 360
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 GTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCA 420
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 TACCGAGCGTCAGTGGCACAAAAAGGAAGTGGTACATCGCGGTCAAGGCAAACTGTAAGC 480
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 GCGACAGTTCGACTATATCTAACATCATGACTCCTTGCTCATCGCATGAAGACTCCGAGA 540
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 GTGAACCCCGTTAGAAAGGGTCACACGCATGCCCCAATAGAAATTTGTTTGAACACTTTC 600
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 ATCATACCATGTGAATGCACACAAAAACGGCGTAAAGAAAGGTTGCAAACATGTTAATAA 660
consensus_6566#1 -TTAT-CCCCGCTGGCGCGGGGAACACCTGTTTTC-GCAAATCTATGGAC-TATTGCTA- 55
* ** ** * ** ** * * * * * ** * ** * ** **
consensus_6566#0 AAACTCAAATTGATCCCAC-GTATATATTACGCCGCAAAATCCTTACAATAAACAGGTTT 719
consensus_6566#1 ---TTCGGTTTATCCCCGCTGNATATATTACGCCGCAAAATCCTTACAATAAACAGGTTT 112
** ** *** * * **************************************
consensus_6566#0 TTGTTGAAGCAAATTTGCATTTTTCGACGGTGATCAATTTATAGCTAAATTACCGCCTTT 779
consensus_6566#1 TTGTTGAAGCAAATTTGCATTTTTCGACGGTGATCAATTTATAGCTAAATTACCGCCTTT 172
************************************************************
consensus_6566#0 CAGCCAATTTGATCGAGAACAATTTATCTCTTTTTGATGCCCATTTCCAAGACTTATACA 839
consensus_6566#1 CAGCCAATTTGATCGAGAACAATTTATCTCTTTTTGATGCCCATTTCCAAGACTTATACA 232
************************************************************
consensus_6566#0 TTGATAAATATCAATTCCTACAAATTATGTTAATCATGTTTCAATAAGGTAACTTTAGTG 899
consensus_6566#1 TTGATAAATATCAATTCCTACAAATTATGTTAATCATGTTTCAATAAGGTAACTTTAGTG 292
************************************************************
consensus_6566#0 ACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAA 959
consensus_6566#1 ACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAA 352
************************************************************
consensus_6566#0 GATAAAAAGAGACGAAGCAAAAACAGCACGGTTGACCTTAATTCTTTTTTTGGTCACTGG 1019
consensus_6566#1 GATAAAAAGAGACGAAGCAAAAACAGCACGGTTGACCTTAATTCTTTTTTTGGTCACTGG 412
************************************************************
consensus_6566#0 CTAATACGACGCAGAGTTTCAGGATTACTAATAAAGGCATAAATCCACCCCGCCAATATT 1079
consensus_6566#1 CTAATACGACGCAGAGTTTCAGGATTACTAATAAAGGCATAAATCCACCCCGCCAATATT 472
************************************************************
consensus_6566#0 AACATTTAGTTAACTTATAATTATATTATAATTAACTCACCCAGGGTTATTATTTTGTTA 1139
consensus_6566#1 AACATTTAGTTAACTTATAATTATATTATAATTAACTCACCCAGGGTTATTATTTTGTTA 532
************************************************************
consensus_6566#0 AAAATAAAGCCACATATACGTGGCTTGAGAGTGAAGATAAACGCAAAATTACCTGATGCG 1199
consensus_6566#1 AAAATAAAGCCACATATACGTGGCTTGAGAGTGAAGATAAACGCAAAATTACCTGATGCG 592
************************************************************
consensus_6566#0 CTACGCTTGCCAGTGTCTACATCATCTCTGCAATATATTGAATTTGCCTGCTTTTGTAGA 1259
consensus_6566#1 CTACGCTTGCCAGTGTCTACATCATCTCTGCAATATATTGAATTTGCCTGCTTTTGTAGA 652
************************************************************
consensus_6566#0 CCGAATAAAGCGT-- 1272
consensus_6566#1 CCGAATAAAGCGTTC 667
*************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||