|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1926 fasta sequence
[GGCTAAAACGGAAGAGCACACTAGTGGTTTCACTTGTGTCACTTGCACTGACTAATTGTACGAGCTCGCCACGTACTGTCTCACCAGCTAGCATGGCGACATCGCCGTTGCCACGTTGGGCGGCGACGCCGAGCCCGTCGCGCCCGCTGTGGCGTTCATCCGGCGGCGGTGGCGCCATCGTCAGTAAACTCCTGCGTTCCCCATTCACCACCGTGCTCGAGGCTGTCCGCGGGCGTGCTGCCCCCGACGACACGCCGCCTCCTGTACAAGCTCCACCGGCGCCGGAGCACAACTGCGCCGGCGCGTTCGACGGTATCGCCGTCGTCGCTGGAGATGGGAGGGAGGAGCGGCTCGACGGGGGCGTGTTCCTGACGTGGGAGGACGTGTGGGTGACGGCGGTGGACAGCGGGGGGAAGGCCGCCACCATCCTCAACGGCGTCAGCGGCAGCGCGCGCCCCGGCGAGGTGTTGGCCATCATGGGCCCCTCCGGCTGCGGCAAGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAAACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAACCTCGGAGAGTGAAGACAGACTCCGGTGCATGCCAGCTGTTGCAGATGAAGCAATAGACATTTTGGTGAATTCATACAAATCCTCCAACACTTCGGAAGTCGCAAAACAGGACATGCGTCACATAAACGAGATGGATCGGGTGACGATTGGAAGAAACCGAGCTGGTTTTATTACCAAGACACTTGTCCTTACCAGACGTTCATTTGTTAACATGTATAGAGATATTGGATACTATTGGTTGCGGATGGCCATTTATATTTCCATAAGTGCTTGCCTTGGCACCATATTTTACAATATGGGCTATGGATCCGATTCAATTCGAGCTAGGTCATCAATGTTAATGTTTATTAGCACCATGCTAACCTTAATGGCAATTGGAGGGTTCCCATCCTTCGTGGAGGATATGAAGATCTTTAGCAGGGAAAGGCTAAATGGACATTATGGTGTAACCACATTTGTCATCTCCAATACATTGTCATCCACACCATATCTTCTTCTTATTGCCATAATACCTGGTGCAATTGCGTATTATCTTAGTGGCTTACAAAGGCAAATTGAACATTTTGTCTATTTTACGTTAGTACTTTGTTCATGCACAATGCTAGTGGAAGGCCTGATGATGATCGTAGCAA-CCA-TCGTA-CCAGATTT-CCTAAT-GGGGATCATAACAGGTGCTGGTATACAAGGTATTATGATGCTCAC-AAGTGGATTC-TTCCAAC-TTCCTAATAGCCTTCCAAACA-TAGTATGGAAGTACCCAATGTACTACATCTCCTTTCACAAGTATGCA-CTGCAGGGG-TTTTA-CA-AGAATGAGTTCTTAGGTTTA-GTACTCAACCTTGAAGGACCCATAACAGTTAGTGGCGAGA-AAGTTA-TTGCTGAG-TTATTTCAAGTGGAAACAGGTCATTCAAAATGGG-TAGATCTTGCAG-TACTTTGTGGTATGATTATGACCTATAGACTATTGT-TTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCCCATACTTAAGGGGATGACA-TTTAGGTGCAACACTA-AATGCATTCATGGCATAGAGAACCT-TT-GCGCCCCCTCGT-GATTCTTGTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAG-CGAGAAAAAAATGTAGTATTGTATTTATATTACTCAATATAAGTATGTGACTATATTGTGAACAGATTCACTACTGGAGAAACGCTTTTTAGTCCCGGTTAGGAACCCCCTATAGTACCGGTTTTCTAACCGGGACTACGAATCCGGGACTAAAAGATGTCCAGTTTTAGTCCCGGTTGAAATAAAGAGACTAAATC]
[+] EMBL AK065634 [GGCTAAAACGGAAGAGCACACTAGTGGTTTCACTTGTGTCACTTGCACTGACTAATTGTACGAGCTCGCCACGTACTGTCTCACCAGCTAGCATGGCGACATCGCCGTTGCCACGTTGGGCGGCGACGCCGAGCCCGTCGCGCCCGCTGTGGCGTTCATCCGGCGGCGGTGGCGCCATCGTCAGTAAACTCCTGCGTTCCCCATTCACCACCGTGCTCGAGGCTGTCCGCGGGCGTGCTGCCCCCGACGACACGCCGCCTCCTGTACAAGCTCCACCGGCGCCGGAGCACAACTGCGCCGGCGCGTTCGACGGTATCGCCGTCGTCGCTGGAGATGGGAGGGAGGAGCGGCTCGACGGGGGCGTGTTCCTGACGTGGGAGGACGTGTGGGTGACGGCGGTGGACAGCGGGGGGAAGGCCGCCACCATCCTCAACGGCGTCAGCGGCAGCGCGCGCCCCGGCGAGGTGTTGGCCATCATGGGCCCCTCCGGCTGCGGCAAGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAAACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAACCTCGGAGAGTGAAGACAGACTCCGGTGCATGCCAGCTGTTGCAGATGAAGCAATAGACATTTTGGTGAATTCATACAAATCCTCCAACACTTCGGAAGTCGCAAAACAGGACATGCGTCACATAAACGAGATGGATCGGGTGACGATTGGAAGAAACCGAGCTGGTTTTATTACCAAGACACTTGTCCTTACCAGACGTTCATTTGTTAACATGTATAGAGATATTGGATACTATTGGTTGCGGATGGCCATTTATATTTCCATAAGTGCTTGCCTTGGCACCATATTTTACAATATGGGCTATGGATCCGATTCAATTCGAGCTAGGTCATCAATGTTAATGTTTATTAGCACCATGCTAACCTTAATGGCAATTGGAGGGTTCCCATCCTTCGTGGAGGATATGAAGATCTTTAGCAGGGAAAGGCTAAATGGACATTATGGTGTAACCACATTTGTCATCTCCAATACATTGTCATCCACACCATATCTTCTTCTTATTGCCATAATACCTGGTGCAATTGCGTATTATCTTAGTGGCTTACAAAGGCAAATTGAACATTTTGTCTATTTTACGTTAGTACTTTGTTCATGCACAATGCTAGTGGAAGGCCTGATGATGATCGTAGCAA CCA TCGTA CCAGATTT CCTAAT GGGGATCATAACAGGTGCTGGTATACAAGGTATTATGATGCTCAC AAGTGGATTC TTCCAAC TTCCTAATAGCCTTCCAAACA TAGTATGGAAGTACCCAATGTACTACATCTCCTTTCACAAGTATGCA CTGCAGGGG TTTTA CA AGAATGAGTTCTTAGGTTTA GTACTCAACCTTGAAGGACCCATAACAGTTAGTGGCGAGA AAGTTA TTGCTGAG TTATTTCAAGTGGAAACAGGTCATTCAAAATGGG TAGATCTTGCAG TACTTTGTGGTATGATTATGACCTATAGACTATTGT TTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCCCATACTTAAGGGGATGACA TTTAGGTGCAACACTA AATGCATTCATGGCATAGAGAACCT TT GCGCCCCCTCGT GATTCTTGTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAG CGAGAAAAAAATGTAGTATTGTATTTATATTACTCAATATAAGTATGTGACTATATTGTGAACAGATTCACTACTGGAGAAACGCTTTTTAGTCCCGGTTAGGAACCCCCTATAGTACCGGTTTTCTAACCGGGACTACGAATCCGGGACTAAAAGATGTCCAGTTTTAGTCCCGGTTGAAATAAAGAGACTAAATC]
[-] EMBL CB657393 [ CAAAGGCAAATTGAACATTTTGTCTATTTTACGTTAGTACTTTGTTCATGCACAATGCTAGTGGAAGGCCTGATGATGATCGTAGCAA CCA TCGTA CCAGATTT CTTAAT GGGGATCATAACAGGTGCTGGTATACAAGGTATTATGATGCTCAC AAGTGGATTC TTCCAAC TTCCTAATAGCCTTCCAAACA TAGTATGGAAGTACCCAATGTACTACATCTCCTTTCACAAGTATGCA CTGCAGGGG TTTTA CA AGAATGAGTTCTTAGGTTTA GTACTCACCCTTGAAGGACCCATACCAGTTAGTGGCGAGA AAGTTA TTGCTGAG TTATTTCAAGTGGAAACAGGTCATTCAAAATGGG TAGATCTTGCAG TACTTTGTGGTATGATTATGCCCTATAGACTATTGT TTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCCCATACTTAAGGGGATGACA TTTAGGTGCAACACTA AATGCATTCATGGCATAGAGACCCT TT GCGCCCCCTCGT GATTCTTGTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAG CGAGAAAAAAATGTAGTATTGTATTTATATTACTCAATATAAGTATGTGACTATATTGTGAACAGATTCACTACTGGAGAAACGCT ]
[+] EMBL BQ906642 [ gAGCAACCCATTCGTACCCAGATTTCCCTAATGGGGGATCATAACAGGTGCTGGTATACAAGGTATCATGATGCTCACAAAGTGGATTCGTTCCAACGTTCCTAATAGCCTTCCAAACACTAGTATGGAAGTACCCAATGTACTACATCTCCTTTCACAAGTATGCACCTGCAGGGGCTTTTACCACAGAATGAGTTCTTAGGTTTACGTACTCAACCTTGAAGGACCCATAACAGTTAGTGGCGAGANAAGTTACTTGCTGAGCTTATTTCAAGTGGAAACAGGTCATTCAAAATGGGCTGGATCTTCCAGCTACTTTGTGGTATGATTATGACCTATAGACTATTGTCTTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCCCATACTTAAGGGGATGACACTTTAGGTGCAACACTATAATGCATTCATGGCATAGAGAACCTGTTGGCGCCCCCTCGTGGATTCTTGTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAGCCGAG AAAAAATGTAGTATTGTATTTATATTACTCCATATAAGTATGTGACTATATNGTGAACAaaaa ]
consensusID : consensus_6570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[AGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAAACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAACCTCGGCGTACGTGACACAAGAGAACGTGCTAATGGCGACACTAACAGTGCGCGAGGCCATCTACTACTCGGCACAGATCCAGCTGCCAGACACCATGACTATGGCAGAGAAGTTGCGGCGCGCCGATGAAACGGTGAGGGAGATGGGACTCACCGGCACGCTGGACACTCGGATCGGCGGGCGGTCAAGCAAGGGCATCAGCGGTGGGCAACAAAAGCGGTTGAGCATCTGCCTTGACATCCTTACACGTCCCCGGCTGCTGTTCCTCGACGAACCCACCAGCGGCCTCGACAGCGCCGCCTCCTTCCATGTCATGAGTCGCATCATAGGCCTCGCTGCCAGGGAGGGCATGACAGTCGTCGCTGTCGTGCACCAGCCATGCAGCGAGGTGTTCGAGCTCTTCCATGTCCTTTGCCTGCTCGCCGCTGGGAACACCATCTTCTTTGGCCCAGCTTCAATGGCTGCCGAGTTCTTTGCTTCAAATGGCTACCCTTGCCCTCCAATGAGGAATCCATCAGATCATTTTTTGAGGACTGTGAACAAAGATTTTGACAAGGAGAGTGAAGACAGACTCCGGTGCATGCCAGCTGTTGCAGATGAAGCAATAGACATTTTGGTGAATTCATACAAATCCTCCAACACTTCGGAAGTCGCAAAACAGGACA]
[+] EMBL CB657392 [AGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAAACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAACCTCGGCGTACGTGACACAAGAGAACGTGCTAATGGCGACACTAACAGTGCGCGAGGCCATCTACTACTCGGCACAGATCCAGCTGCCAGACACCATGACTATGGCAGAGAAGTTGCGGCGCGCCGATGAAACGGTGAGGGAGATGGGACTCACCGGCACGCTGGACACTCGGATCGGCGGGCGGTCAAGCAAGGGCATCAGCGGTGGGCAACAAAAGCGGTTGAGCATCTGCCTTGACATCCTTACACGTCCCCGGCTGCTGTTCCTCGACGAACCCACCAGCGGCCTCGACAGCGCCGCCTCCTTCCATGTCATGAGTCGCATCATAGGCCTCGCTGCCAGGGAGGGCATGACAGTCGTCGCTGTCGTGCACCAGCCATGCAGCGAGGTGTTCGAGCTCTTCCATGTCCTTTGCCTGCTCGCCGCTGGGAACACCATCTTCTTTGGCCCAGCTTCAATGGCTGCCGAGTTCTTTGCTTCAAATGGCTACCCTTGCCCTCCAATGAGGAATCCATCAGATCATTTTTTGAGGACTGTGAACAAAGATTTTGACAAGGAGAGTGAAGACAGACTCCGGTGCATGCCAGCTGTTGCAGATGAAGCAATAGACATTTTGGTGAATTCATACAAATCCTCCAACACTTCGGAAGTCGCAAAACAGGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6570#0 GGCTAAAACGGAAGAGCACACTAGTGGTTTCACTTGTGTCACTTGCACTGACTAATTGTA 60
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 CGAGCTCGCCACGTACTGTCTCACCAGCTAGCATGGCGACATCGCCGTTGCCACGTTGGG 120
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 CGGCGACGCCGAGCCCGTCGCGCCCGCTGTGGCGTTCATCCGGCGGCGGTGGCGCCATCG 180
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 TCAGTAAACTCCTGCGTTCCCCATTCACCACCGTGCTCGAGGCTGTCCGCGGGCGTGCTG 240
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 CCCCCGACGACACGCCGCCTCCTGTACAAGCTCCACCGGCGCCGGAGCACAACTGCGCCG 300
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 GCGCGTTCGACGGTATCGCCGTCGTCGCTGGAGATGGGAGGGAGGAGCGGCTCGACGGGG 360
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 GCGTGTTCCTGACGTGGGAGGACGTGTGGGTGACGGCGGTGGACAGCGGGGGGAAGGCCG 420
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 CCACCATCCTCAACGGCGTCAGCGGCAGCGCGCGCCCCGGCGAGGTGTTGGCCATCATGG 480
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 GCCCCTCCGGCTGCGGCAAGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAA 540
consensus_6570#1 ------------------AGACTACGCTGCTCGACACCCTTGCCGGAAGATTGGATTCAA 42
******************************************
consensus_6570#0 ACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAA 600
consensus_6570#1 ACTTGAAGATGAAAGGGCAAATTCTGGTTAACGGTCGATGTCAGCAACTTGCATTTGGAA 102
************************************************************
consensus_6570#0 CCTCGGAGAGTGAAGACAGACTCCGGTGCATGCCAGCTGTTGCA--GATGAAGCAATAGA 658
consensus_6570#1 CCTCGGCGTACGTG---ACACAAGAGAACGTGCTAATGGCGACACTAACAGTGCGCGAGG 159
****** * * * ** * * *** * * ** * ** **
consensus_6570#0 CATTTTGGTGAATTCATACAAATCC---TCCAACACTTCGGAAGTCGCAAAACAGGACAT 715
consensus_6570#1 CCATCTACT-ACTCGGCACAGATCCAGCTGCCAGACACCATGACT-ATGGCAGAGAAGTT 217
* * * * * * *** **** * * * ** * * * * ** * *
consensus_6570#0 GCGTCACATAAACGAGATGGATCGGGTGACGATTGGAAGAAACCGAGCTGGTTTTATTAC 775
consensus_6570#1 GCGGCGCGCCGATGAAACGGTGAGGGAGA----TGGGACTCACCGGCACGCT-------- 265
*** * * * ** * ** *** ** *** * **** * *
consensus_6570#0 CAAGACACTTGTCCTTACCAGACGTTCATTTGTTAACATGTATAGAGATATTGGATACTA 835
consensus_6570#1 --GGACACTCGGA-TCGGCGGGCGGTCAAGCAAGGGCAT---CAGCGGTGGGCAACAAAA 319
****** * * * * ** *** *** ** * * * * *
consensus_6570#0 TTGGTTGCGGATGGCCATTTATATTTCCATAAGTGCTTGCCTTGGCACCATATTTTACAA 895
consensus_6570#1 GCGGTTGAGCATCTGCCTTGACATCCTTACACGTCCCCGGCT--GC-TGTTCCTCGACGA 376
***** * ** * ** * ** * * ** * * ** ** * * ** *
consensus_6570#0 TATGGGCTATGGATCCGATTCAATTCGAGCTAGGTCATCAATGTTAATGTTTATTAGCAC 955
consensus_6570#1 ACCCACCAGCGGCCTCGA--CAGCGCCGCCT---CCTTCCATGTCA----TGAGTCGCAT 427
* ** *** ** * ** * ** **** * * * * ***
consensus_6570#0 CATGCTAACCTTAATGGCAATTGGAGGGTTCCCATCCTTCGTGGAGGATATGAAGATCTT 1015
consensus_6570#1 CATA--GGCCTCGCTGCCAG--GGAGGG--CATGACAGTCGTCGCTGTCGTGCACCAGCC 481
*** *** ** ** ****** * * **** * * ** *
consensus_6570#0 TAGCAGGGAAAGGCTAAATGGACATTATGGTGTAACCACATTTGTCATCTCCAATACATT 1075
consensus_6570#1 ATGCAGCGAGGTGTTCGAGCTCTTCCATGTCCTTTGCCTGCTCGCCGCTGGGAA--CACC 539
**** ** * * * *** * * * * * ** **
consensus_6570#0 GTCATCCACACCATATCTTCTTCTTATTGCCATAATACCTGGTGCAATTGCGTATTATCT 1135
consensus_6570#1 ATCTTCTTTGGCCCAGCTTCAA-TGGCTGCCGAGTTCTTTGCTTCAAATG---GCTACCC 595
** ** * * **** * **** * ** * *** ** ** *
consensus_6570#0 TAGTGGCTTACAAAGGCAAATTGAACATTTTGTCTATTTTACGTTAGTACTTTGTTCATG 1195
consensus_6570#1 T--TGCCCTCCAATGAGGAATCCATCA----GATCATTTTTTG--AGGACT------GTG 641
* ** * * *** * *** * ** * ***** * ** *** **
consensus_6570#0 CACAATGCTAGTGGAAGGCCTGATGATGATCGTAGCAACCATCGTACCAGATTTCCTAAT 1255
consensus_6570#1 AACAAAGATTTTGACAAGGAGAGTGAAGACAG-----ACTCCGGTGC-----------AT 685
**** * * ** * * *** ** * ** ** * **
consensus_6570#0 GGGGATCATAACAGGTGCTGGTATACAAGGTATTATGATGCTCACAAGTGGATTCTTCCA 1315
consensus_6570#1 GCCAGCTGTTGCAGATGAAGCAATA---GACATTTTGGTGAATTCATACAAATCCT-CCA 741
* * *** ** * *** * *** ** ** ** ** ** ***
consensus_6570#0 ACTTCCTAATAGCCTTCCAAACATAGTATGGAAGTACCCAATGTACTACATCTCCTTTCA 1375
consensus_6570#1 ACACTTCGGAAGTCG-CAAAACAGGACA-------------------------------- 768
** ** * * ***** *
consensus_6570#0 CAAGTATGCACTGCAGGGGTTTTACAAGAATGAGTTCTTAGGTTTAGTACTCAACCTTGA 1435
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 AGGACCCATAACAGTTAGTGGCGAGAAAGTTATTGCTGAGTTATTTCAAGTGGAAACAGG 1495
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 TCATTCAAAATGGGTAGATCTTGCAGTACTTTGTGGTATGATTATGACCTATAGACTATT 1555
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 GTTTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCCCATACTTAAGGGGATGACATT 1615
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 TAGGTGCAACACTAAATGCATTCATGGCATAGAGAACCTTTGCGCCCCCTCGTGATTCTT 1675
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 GTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAGCGAGAA 1735
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 AAAAATGTAGTATTGTATTTATATTACTCAATATAAGTATGTGACTATATTGTGAACAGA 1795
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 TTCACTACTGGAGAAACGCTTTTTAGTCCCGGTTAGGAACCCCCTATAGTACCGGTTTTC 1855
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 TAACCGGGACTACGAATCCGGGACTAAAAGATGTCCAGTTTTAGTCCCGGTTGAAATAAA 1915
consensus_6570#1 ------------------------------------------------------------
consensus_6570#0 GAGACTAAATC 1926
consensus_6570#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||