cluster # 6613

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Oryza sativa
cluster # 6613 cluster # 6613 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6613#0 length = 426 sequences # 1

consensus_6613#1 length = 334 sequences # 2
consensus_6613#2 length = 312 sequences # 1

consensusID : consensus_6613#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [CTCAACATCACCGCCACCTCCACCAACCAGGTCAACGTCTCCACCGGCGTCGTNGACACCACGCTCGGCACCGCGNTGCGCGCCGACCAGCCGCTCGCCGTTTACTCCGTCGACAAGGTGCTCCTTCCCGTACGCGCTGTTCGGCCCCAANCCGCCGCCGTCCCCGCCGCCGGCGCCCAGCAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGACCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAANATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAAAAAAAAAAAAAAAA]

[+] EMBL AU183862             [CTCAACATCACCGCCACCTCCACCAACCAGGTCAACGTCTCCACCGGCGTCGTNGACACCACGCTCGGCACCGCGNTGCGCGCCGACCAGCCGCTCGCCGTTTACTCCGTCGACAAGGTGCTCCTTCCCGTACGCGCTGTTCGGCCCCAANCCGCCGCCGTCCCCGCCGCCGGCGCCCAGCAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGACCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAANATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAAAAAAAAAAAAAAAA]




>consensus_6613#0
CTCAACATCACCGCCACCTCCACCAACCAGGTCAACGTCTCCACCGGCGTCGTNGACACC
ACGCTCGGCACCGCGNTGCGCGCCGACCAGCCGCTCGCCGTTTACTCCGTCGACAAGGTG
CTCCTTCCCGTACGCGCTGTTCGGCCCCAANCCGCCGCCGTCCCCGCCGCCGGCGCCCAG
CAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGA
CCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTT
GCTGGCCGCCGCTTGCCTCTTGTAANATGAGAAATTCGTGTCGGTGCATATGAGATCAGA
GGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAAAAAAAAAA
AAAAAA

consensusID : consensus_6613#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 334
fasta sequence

                              [GCGCCCAGCAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGACCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTGGATGACGAAAAAA]

[+] EMBL AU184570             [GCGCCCAGCAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGACCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTGGATGACGAAAAAA]
[+] EMBL AU173420             [                                                                     CACCCTGCCGGNGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTGGATGACGAAAAAA]




>consensus_6613#1
GCGCCCAGCAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGC
TCCGCCGACCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTG
GCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATG
AGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAA
CTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTT
ATCCAGTGGTTTTGAAGAGTGGATGACGAAAAAA

consensusID : consensus_6613#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [GCTGAGAGCAATGGCGATGGTGGCGAGGAGGTTCTTNGTGGCGCCGACCACCCTNCCGGCGCCGCCCCCGCCGNCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTGGATGAAAAAAAA]

[+] EMBL OSR10052A            [GCTGAGAGCAATGGCGATGGTGGCGAGGAGGTTCTTNGTGGCGCCGACCACCCTNCCGGCGCCGCCCCCGCCGNCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTGGATGAAAAAAAA]




>consensus_6613#2
GCTGAGAGCAATGGCGATGGTGGCGAGGAGGTTCTTNGTGGCGCCGACCACCCTNCCGGC
GCCGCCCCCGCCGNCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCT
TGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGC
TGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTC
TCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTG
GATGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6613#1      ------------------------------------------------------------
consensus_6613#2      ------------------------------------------------------------
consensus_6613#0      CTCAACATCACCGCCACCTCCACCAACCAGGTCAACGTCTCCACCGGCGTCGTNGACACC 60
                                                                                  

consensus_6613#1      ------------------------------------------------------------
consensus_6613#2      ------------------------------------------------------------
consensus_6613#0      ACGCTCGGCACCGCGNTGCGCGCCGACCAGCCGCTCGCCGTTTACTCCGTCGACAAGGTG 120
                                                                                  

consensus_6613#1      ----------------------------------------------------GCGCCCAG 8
consensus_6613#2      ------------------------------------------------------------
consensus_6613#0      CTCCTTCCCGTACGCGCTGTTCGGCCCCAANCCGCCGCCGTCCCCGCCGCCGGCGCCCAG 180
                                                                                  

consensus_6613#1      CAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGA 68
consensus_6613#2      ----------GCTGAGAGCAATGGCGATGGTGGCGAGGAGGTTCTTNGTGGC---GCCGA 47
consensus_6613#0      CAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGA 240
                                **  ** *  *   *   *    ** *****  *    ****   *****

consensus_6613#1      CCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTT 128
consensus_6613#2      CCACCCTNCCGGCGCCGCCCCCGCCGNCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTT 107
consensus_6613#0      CCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTT 300
                      ******* ****************** *********************************

consensus_6613#1      GCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGA 188
consensus_6613#2      GCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGA 167
consensus_6613#0      GCTGGCCGCCGCTTGCCTCTTGTAANATGAGAAATTCGTGTCGGTGCATATGAGATCAGA 360
                      ************************* **********************************

consensus_6613#1      GGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACT 248
consensus_6613#2      GGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACT 227
consensus_6613#0      GGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAAAAAAAAAA 420
                      ****************************************************   ***  

consensus_6613#1      ACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTG 308
consensus_6613#2      ACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTG 287
consensus_6613#0      AAAAAA------------------------------------------------------ 426
                      *                                                           

consensus_6613#1      GTTTTGAAGAGTGGATGACGAAAAAA 334
consensus_6613#2      GTTTTGAAGAGTGGATGAAAAAAAA- 312
consensus_6613#0      --------------------------