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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1344 fasta sequence
[AGGGTGAGGGCGACGGGGGGGAAGGACAGGCACAGCAAGGTGTACACGGCGAAGGGAATCCGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGACCGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCCGCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCCGCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCGAGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCGTCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGGAAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGACGCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGACATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGAGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCG-CCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGATCGATCCCAGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAGATTAATTGTTGTCACCTTTCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGCCCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACCCTGCCGCTGCTGCTACCTGCCATTGCCATCACTCAGACAATCTTGTGAATTTCCTTCTTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAATAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAATTGAAATTCATATGTGCCTCTGGTTATTGGAGTGGCAAAAAAAAAAAAAA]
[+] EMBL AB071806 [AGGGTGAGGGCGACGGGGGGGAAGGACAGGCACAGCAAGGTGTACACGGCGAAGGGAATCCGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGACCGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCCGCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCCGCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCGAGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCGTCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGGAAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGACGCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGACATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGAGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCG CCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGATCGATCCCAGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAGATTAATTGTTGTCACCTTTCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGCCCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACCCTGCCGCTGCTGCTACCTGCCATTGCCATCACTCAGACAATCTTGTGAATTTCCTTCTTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAATAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAATTGAAATTCATATGTGCCTCTGGTTATTGGAGTGGCAAAAAAAAAAAAAA]
[+] EMBL CB683174 [ ACACCGCGAAGGGAATCCGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGACCGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCCGCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCCGCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCGAGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCGTCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGGAAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGACGCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGACATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGAGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCGCCCGTCG ACATGTCCGGCCACCACCACCACCACCATC ]
consensusID : consensus_6679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence
[TCAGAGAGATTCAGAGTAGCTCAGAGTGAGCTTTTGCTCGTTGGTCCCTCGAATTCTGGAGCTAGTTCGCCCGGGTCCTCGGTTTCGATCGATCCCCTTCAGACGAAGCGGAGGCGGATTTCGCATGAGGTAGCGCAAGCGTCAGCCATGGAGGAGGTCGTCGTCGGCGGCAAGGAGCGCAAGCGCCCGCGCGGCGCGCTCGTCGGCGTCGGCGGCGGGGGCGCGTCGGCGGCGACGGCGGCGGCCTGGCGGACGAGCCGGGTGGCGCGGGCGGCGGCGGGGGGGAAGGACAGGCACAGCAAGGTGGTGACGTCGCGGGGGCTCCGCGACCGCCGGGTGAGGCTGTCGGTGCCGACGGCCATCGCGTTCTACGACATCCAGGACCGCCTCGGCGTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCCGCGCCGCCGCGGCCGCCATCGACGCGCTCCCGTCGCTCGACTGCTCCTTAGCCCTCCCCGCCGCCGCCTCCTCGCCGCCGCCGCCGGCCGCCGACGACGCCGAGGTCAGCACATCCGAGACCAGCAAGAGCTCCGTGCTCTCCCTCGCCAACGCCCCCTGCGACAACGGCGGCGGCGCGTTCGCCGAGCTCCTCCACTGCTCGAACACCAACGGCAGCAAGCCATTGCAGCAACAGCAGCAGGCGACGCTTGCGTACTACGCGGCGGCGCAGAGCGCGCACATGGCGG]
[+] EMBL AB071808 [TCAGAGAGATTCAGAGTAGCTCAGAGTGAGCTTTTGCTCGTTGGTCCCTCGAATTCTGGAGCTAGTTCGCCCGGGTCCTCGGTTTCGATCGATCCCCTTCAGACGAAGCGGAGGCGGATTTCGCATGAGGTAGCGCAAGCGTCAGCCATGGAGGAGGTCGTCGTCGGCGGCAAGGAGCGCAAGCGCCCGCGCGGCGCGCTCGTCGGCGTCGGCGGCGGGGGCGCGTCGGCGGCGACGGCGGCGGCCTGGCGGACGAGCCGGGTGGCGCGGGCGGCGGCGGGGGGGAAGGACAGGCACAGCAAGGTGGTGACGTCGCGGGGGCTCCGCGACCGCCGGGTGAGGCTGTCGGTGCCGACGGCCATCGCGTTCTACGACATCCAGGACCGCCTCGGCGTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCCGCGCCGCCGCGGCCGCCATCGACGCGCTCCCGTCGCTCGACTGCTCCTTAGCCCTCCCCGCCGCCGCCTCCTCGCCGCCGCCGCCGGCCGCCGACGACGCCGAGGTCAGCACATCCGAGACCAGCAAGAGCTCCGTGCTCTCCCTCGCCAACGCCCCCTGCGACAACGGCGGCGGCGCGTTCGCCGAGCTCCTCCACTGCTCGAACACCAACGGCAGCAAGCCATTGCAGCAACAGCAGCAGGCGACGCTTGCGTACTACGCGGCGGCGCAGAGCGCGCACATGGCGG]
consensusID : consensus_6679#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGATCGATCCCAGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAGATTAATTGTTGTCACCTTTCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGCCCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACCCTGCCGCTGCTGCTACCTGCCATTGCCATCACTCAGACAATCTTGTGAATTTCCTTCTTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAATAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAATTGAAATTCATATGTGCAAGGGGTTATTGGAGTGGCATTATTGTGTTCTCTCCTTTAAAGG]
[-] EMBL CB683584 [CAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGATCGATCCCAGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAGATTAATTGTTGTCACCTTTCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGCCCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACCCTGCCGCTGCTGCTACCTGCCATTGCCATCACTCAGACAATCTTGTGAATTTCCTTCTTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAATAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAATTGAAATTCATATGTGCAAGGGGTTATTGGAGTGGCATTATTGTGTTCTCTCCTTTAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6679#0 AGGGTGAGGGCGACGGGGGGGAAGGACAGGCACAGCAAGGTGTACACGGCGAAGGGAATC 60
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 ------------------------------------------------------------
consensus_6679#0 CGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGAC 120
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 ------------------------------------------------------------
consensus_6679#0 CGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCC 180
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 ------------------------------------------------------------
consensus_6679#0 GCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCC 240
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 ------------------------------------------------------------
consensus_6679#0 GCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAG 300
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 ------------------------------------------------------------
consensus_6679#0 TCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCG 360
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 ------------------------------------------------------------
consensus_6679#0 AGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCG 420
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 ------------------------------------------------------------
consensus_6679#0 TCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGG 480
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 ------------------------------------------------------------
consensus_6679#0 AAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGAC 540
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 ------------------------------------------------------------
consensus_6679#0 GCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGAC 600
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 ------------------------------------------------------------
consensus_6679#0 ATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGA 660
consensus_6679#2 ------------------------------------------------------------
consensus_6679#1 -----------------------------------------------TCAGAGAGATTCA 13
consensus_6679#0 GGCGACTACAACCTCAACTTCTCCATGT----CCTCGGGTTTCTTGGGTGCCAATAGGGG 716
consensus_6679#2 --------CAACCTCAACTTCTCCATGT----CCTCGGGTTTCTTGGGTGCCAATAGGGG 48
consensus_6679#1 GAGTAGCTCAGAGTGAGCTTTTGCTCGTTGGTCCCTCGAATTCTGGAGCTAGTTCGCCCG 73
** * * *** * * ** ** * **** * * *
consensus_6679#0 GACCCTTCAGTCCAAT---TCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCA 773
consensus_6679#2 GACCCTTCAGTCCAAT---TCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCA 105
consensus_6679#1 GGTCCTCGGTTTCGATCGATCCCCTTCAGACGAAGC-GGAGGCGGATTTCGCATGAGGTA 132
* *** * * ** ** ** ** ** * ** * * * *
consensus_6679#0 GCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGC 833
consensus_6679#2 GCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGC 165
consensus_6679#1 GCGCAAGCGTCAGCCA-TGGAGGAGGTCGTCGTCGGCGGCAAGGAGCGCAA-GCGCCCGC 190
** *** *** **** * * * * * * * ** * ** ****
consensus_6679#0 GGCGGCGCACCCGGCGGCGTCCGAGGGCCAGAT-CACCAGCACCGCCGCGTTGCAGC-TG 891
consensus_6679#2 GGCGGCGCACCCGGCGGCGTCCGAGGGCCAGAT-CACCAGCACCGCCGCGTTGCAGC-TG 223
consensus_6679#1 G-CGGCGCGCTCGTCGGCGTCGGCGGCGGGGGCGCGTCGGCGGCGACG-GCGGCGGCCTG 248
* ****** * ** ******* * ** * * * ** ** ** * ** ** **
consensus_6679#0 TGGGATGGATTCCGCCACTCCGGCA----TGAAGGAGAAGAGCAAGAACTGATCGATCCC 947
consensus_6679#2 TGGGATGGATTCCGCCACTCCGGCA----TGAAGGAGAAGAGCAAGAACTGATCGATCCC 279
consensus_6679#1 GCGGACGAGCCGGGTGGCGCGGGCGGCGGCGGGGGGGAAGGACAGGCACAGCAAGGTGGT 308
*** * * * * *** * ** **** ** * ** * * *
consensus_6679#0 AGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAG-ATTAATTGTTGTCACCTT 1006
consensus_6679#2 AGCAACGCATCCTCCAAAGGAACTGAAGATATCATCATCAG-ATTAATTGTTGTCACCTT 338
consensus_6679#1 GACGTCGCGGGGGCTCCGCGACCGCCGGGTGAGGCTGTCGGTGCCGACGGCCATCGCGTT 368
* *** * ** * * * ** * * * ** * **
consensus_6679#0 --------TCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGC 1058
consensus_6679#2 --------TCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGC 390
consensus_6679#1 CTACGACATCCAGGACCGCCTCGGCGTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCAT 428
***** * *** *** * **** ** * * *
consensus_6679#0 CCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACC 1118
consensus_6679#2 CCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACC 450
consensus_6679#1 CCGCGCCGCCGCGGCC--GCCATCGACGCGCTC--CCGTCGCTCGACTGCTCCTTAGCCC 484
*** * ** * ***** *** * ** * * * * **
consensus_6679#0 CTGCCGCTGCTGCTACCT-GCCATTGCCATCACTCA--GACAATCTTGTGAATTTCCTTC 1175
consensus_6679#2 CTGCCGCTGCTGCTACCT-GCCATTGCCATCACTCA--GACAATCTTGTGAATTTCCTTC 507
consensus_6679#1 TCCCCGCCGCCGCCTCCTCGCCGCCGCCGCCGGCCGCCGACGACGCCGAGGTCAGCACAT 544
**** ** ** *** *** *** * * *** * * * *
consensus_6679#0 TTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAA 1235
consensus_6679#2 TTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAA 567
consensus_6679#1 CCGAGACCAGCAAGAGCT-CCGTGCTCTCCCTCGCCAACGCCCCCTGCGACAACGGCGGC 603
* ** **** * ** * * * * * * * * *
consensus_6679#0 TAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAAT 1295
consensus_6679#2 TAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAAT 627
consensus_6679#1 GGCGCGTTCGCCG-AGCT--CCTCCACTGCTCGAACACCAACGGCAGCAAGCCATTGCAG 660
**** *** *** * * * * *** * * * ** *
consensus_6679#0 TGAAATTCATATGTGCCTCTGGTTATTGGAGTGGCAAAAAAAAAAAAAA----------- 1344
consensus_6679#2 TGAAATTCATATGTGCAAGGGGTTATTGGAGTGGCATTATTGTGTTCTCTCCTTTAAAGG 687
consensus_6679#1 CAACAGCAGCAGGCGACGCTTGCGTACTACGCGGCGGCGCAGAGCGCGCACATGGCGG-- 718
* * * * * * * ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||