cluster # 675

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Oryza sativa
cluster # 675 cluster # 675 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_675#0 length = 396 sequences # 1

consensus_675#1 length = 164 sequences # 1

consensusID : consensus_675#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCGGTTTAAAAAAAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTTAAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACCCCCTGACAATTTGCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTTTTGAAAAACATTTTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAATTAAAACCCCTTTTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGGAATTTAACCCCTTTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT]

[+] EMBL CF327241             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCGGTTTAAAAAAAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTTAAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACCCCCTGACAATTTGCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTTTTGAAAAACATTTTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAATTAAAACCCCTTTTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGGAATTTAACCCCTTTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT]




>consensus_675#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCGGTTTAAAAAA
AGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTT
AAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACCCCCTGACAATTT
GCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTTTTGAAAAACATT
TTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAATTAAAACCCCTT
TTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGGAATTTAACCCCT
TTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT

consensusID : consensus_675#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACACGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTAAAATAAAACCCAATTTTACTCCTTCAATCCAT]

[+] EMBL CF301357             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACACGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTAAAATAAAACCCAATTTTACTCCTTCAATCCAT]




>consensus_675#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACA
CGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAG
GCACCCCCGTTAAAATAAAACCCAATTTTACTCCTTCAATCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_675#0      --TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT----------TTTTTTTAACC 48
consensus_675#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACA 60
                       *************************************          **  ****** 

consensus_675#0      CGGTTTAAAAAAAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAG 108
consensus_675#1      CGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAG 120
                     *********** ************************************************

consensus_675#0      GCACCCCCGTTTAAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACC 168
consensus_675#1      GCACCCCCGTTAAAATAAAACCCAAT---TTTACTCCTTCAATCCAT------------- 164
                     *********** *************    ** *  *   ***   *              

consensus_675#0      CCCTGACAATTTGCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTT 228
consensus_675#1      ------------------------------------------------------------
                                                                                 

consensus_675#0      TTGAAAAACATTTTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAA 288
consensus_675#1      ------------------------------------------------------------
                                                                                 

consensus_675#0      TTAAAACCCCTTTTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGG 348
consensus_675#1      ------------------------------------------------------------
                                                                                 

consensus_675#0      AATTTAACCCCTTTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT 396
consensus_675#1      ------------------------------------------------