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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1577 fasta sequence
[TGTTCCTTCCCATGAAGAGATTATTGAGGCTAAGCTAAGAGATAAATCATATCTTAGATCGTTGTCCTTAAACTGGTCTGAGACTACTAATGTATTGAGCCACATTCTCATCTTGAAAATCTGGAAATATCAGGGTATAATGGTCTTCGATTTCCAACTTGGCTAAGCCATCCATGCCTGATAAATATGGTGTCACTAGAGCTGAGAAAATGTAGAAGTTGGGCATACCTCCCAGCTCTTGGAAATTTACAGCGGCTCAAGCATCTTGAATTGCACAAACTTGCAGAATTGAAACGGATCGACCAATCATCAGGCAATTCCCTGCCCCCAAATCTGAAAACTCTAGTGGTGGAAGGTTGCAAAAAATTAGGGGAACTGCCACTTCTACCTTCAAGTTTGACACGGTTAGAAGTAAATGATGTTGGATTGACCACCCTTCCAAGGATATATGACCATCATGTTAACAACATGGATTTTGAAAGCAAGGAAACCAAGCTAATCTCAGTTATCATCAGCAACTGCTCAAATTTAATTTCTCTGGAGGAAAGCTTTCTACTGCAGGAGCACCATATCCGAAGTCTTCGTATCCTAAGGATTGTTGATTGTGAAAAGTTGATCCGAGCTCCTTTGTTATTTTCAGAAATGGATAATCTTGCAGAATTTCATATTGGTAAGTGTTACCGGTTGAGAGTGAGGGAAAACGATGATAATGTACTACTCCCCCGCACACTTAAGGAACTCTCCATGGTGCAGTGTGGTGACCTCCAGCTTCCACTGCTGGAGTCACTGGTTGGTCTGACTAATCTTACGTCATTGAGTCTGCGTAACTGCGGCAGGGTGAGGTCCCTTCCACAGTCAGACGTGTTCCGGAGTCTCAGGTCACTGCGAGAGATGGCTGTGGCTGATTGTACTAGCTTGGCATCCTTGGGTGGGCTTGGAGCCCTTTCATATCTCAATTGGCTGGAAATCACAGAGTGCCCGAGGCTTCAGGGGTATGCCAGATATGATGAAGTGGATGAAGATCCGGTGTTGGAGTTCTCCCTGGAGGTCTACTCTCTCTGGATACATACCCCCGATATGTTACAAAGGGAGCCGCTTAGGAGATTACACAACACAAAATGCTTGATTATTTCTGTTGGCCGTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCTGGAGATACTGAAACCAGAGGTGAAGCTTTTAGTAAATAACCTTTGCTCTCTCAAGAGATTGGAATTTGATACAACTCATCGGTTNCTTGAGTTTNCCATTCTGNCATCTCCTCTGGAGTCTTTCATTATTAGAAGATGTAATCCAGAGTTGNTGGCACGCTGGAAAAGGAAAGATAGTTCTGAATGGGACAGGATTTCACTCATCCGCCATATGAGAATAGGAGATGCNTACTACAATTTCGGGAAANCAGCGGACAAANTTTTAGCTGGGATTCTTCAAAANACAAGACAANAATAGGGNTGGGAGAAACGTNCAACAGNTTTAGGGNACCAGCTGACCAACTTTTAGCCGGGATTTTCAAAGGGNAGTTAGAATTGNTT]
[+] EMBL CB645281 [TGTTCCTTCCCATGAAGAGATTATTGAGGCTAAGCTAAGAGATAAATCATATCTTAGATCGTTGTCCTTAAACTGGTCTGAGACTACTAATGTATTGAGCCACATTCTCATCTTGAAAATCTGGAAATATCAGGGTATAATGGTCTTCGATTTCCAACTTGGCTAAGCCATCCATGCCTGATAAATATGGTGTCACTAGAGCTGAGAAAATGTAGAAGTTGGGCATACCTCCCAGCTCTTGGAAATTTACAGCGGCTCAAGCATCTTGAATTGCACAAACTTGCAGAATTGAAACGGATCGACCAATCATCAGGCAATTCCCTGCCCCCAAATCTGAAAACTCTAGTGGTGGAAGGTTGCAAAAAATTAGGGGAACTGCCACTTCTACCTTCAAGTTTGACACGGTTAGAAGTAAATGATGTTGGATTGACCACCCTTCCAAGGATATATGACCATCATGTTAACAACATGGATTTTGAAAGCAAGGAAACCAAGCTAATCTCAGTTATCATCAGCAACTGCTCAAATTTAATTTCTCTGGAGGAAAGCTTTCTACTGCAGGAGCACCATATCCGAAGTCTTCGTATCCTAAGGATTGTTGATTGTGAAAAGTTGATCCGAGCTCCTTTGTTATTTTCAGAAATGGATAATCTTGCAGAATTTCATATTGGTAAGTGTTACCGGTTGAGAGTGAGGGAAAACGATGATAATGTACTACTCCCCCGCACACTTAAGGAACTCTCCATGGTGCAGTGTGGTGACCTCCAGCTTCCAC ]
[+] EMBL CA763862 [ ATGATAATGTACTACTCCCCCGCACACTTAAGAAACTCTCCATGGTGCAGTGTGGTGACCTCCAGCTTCCACTGCTGGAGTCACTGGTTGGTCTGACTAATCTTACGTCATTGAGTCTGCGTAACTGCGGCAGGGTGAGGTCCCTTCCACAGTCAGACGTGTTCCGGAGTCTCAGGTCACTGCGAGAGATGGCTGTGGCTGATTGTACTAGCTTGGCATCCTTGGGTGGGCTTGGAGCCCTTTCATATCTCAATTGGCTGGAAATCACAGAGTGCCCGAGGCTTCAGGGGTATGCCAGATATGATGAAGTGGATGAAGATCCGGTGTTGGAGTTCTCCCTGGAGGTCTACTCTCTCTGGATACATACCCCCGATATGTTACAAAGGGAGCCGCTTAGGAGATTACACAACACAAAATGCTTGATTATTTCTGTTGGCCGTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCTGGAGATACTGAAACCAGAGGTGAAGCTTTTAGTAAATAACCTTTGCTCTCTCAAGAGATTGGAATTTGATACAACTCATCGGTTNCTTGAGTTTNCCATTCTGNCATCTCCTCTGGAGTCTTTCATTATTAGAAGATGTAATCCAGAGTTGNTGGCACGCTGGAAAAGGAAAGATAGTTCTGAATGGGACAGGATTTCACTCATCCGCCATATGAGAATAGGAGATGCNTACTACAATTTCGGGAAANCAGCGGACAAANTTTTAGCTGGGATTCTTCAAAANACAAGACAANAATAGGGNTGGGAGAAACGTNCAACAGNTTTAGGGNACCAGCTGACCAACTTTTAGCCGGGATTTTCAAAGGGNAGTTAGAATTGNTT]
consensusID : consensus_6805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[GTTCAAGCGAGGATTATTTTCTCTTAAAGAGAGTGAATACCAAAACCTCCATATAAAACCACATCATAACAATTCTTCAAAAAAAGAAAAACACTCCCATGGGTCTAATATGATATTAGACAACCTCATAAAATTAAGATAAAAATAAAATTCATCGATCAGATGAAACTCACTAATATTGAAAAAAAAGAAGCGAAATTAACAATGTTCACACATATCAACTAGAGCTCTAAAATAAGAGATCGATCAGCTTTTCCTGGATGACTTTCAGTTCAATACTGGTTGGCCATTTTACTTTGAGAGGCTACTACTGAACAATCAAGCTTGTTTACCGACAAGGAACGGCATGAACGGATGAACATGTCATTGCATTTTTTTGTGTGTGCATTTCCATCCTTTAATTCCACATGTGATTCACATTCGTGAGACTGAGAAACAAGACACTGGCCTCGAATCCTTGCAGATATTTCTATAAAATATGTGGAACTGACTGTAGTTCTGAAGAATCCATTGGCACAGTTAAGGTATTCACAGCCAGTCACACTAATAAAACTGTCTTCTAACTGGGTCTTGCACACAGAAGGGGCTTACATCTTGGACTTCACTAATCTATTGCTTATCTTCTCTTTTGAAGAATCACGGGTATAAAGTTGGTCAGCTGGTTCCCTGAAACTGCTGTACGTGTCTCACATACCTATTTCTTGGCTTGTCTTCTGAAAAATCACAGC]
[+] EMBL CB627712 [GTTCAAGCGAGGATTATTTTCTCTTAAAGAGAGTGAATACCAAAACCTCCATATAAAACCACATCATAACAATTCTTCAAAAAAAGAAAAACACTCCCATGGGTCTAATATGATATTAGACAACCTCATAAAATTAAGATAAAAATAAAATTCATCGATCAGATGAAACTCACTAATATTGAAAAAAAAGAAGCGAAATTAACAATGTTCACACATATCAACTAGAGCTCTAAAATAAGAGATCGATCAGCTTTTCCTGGATGACTTTCAGTTCAATACTGGTTGGCCATTTTACTTTGAGAGGCTACTACTGAACAATCAAGCTTGTTTACCGACAAGGAACGGCATGAACGGATGAACATGTCATTGCATTTTTTTGTGTGTGCATTTCCATCCTTTAATTCCACATGTGATTCACATTCGTGAGACTGAGAAACAAGACACTGGCCTCGAATCCTTGCAGATATTTCTATAAAATATGTGGAACTGACTGTAGTTCTGAAGAATCCATTGGCACAGTTAAGGTATTCACAGCCAGTCACACTAATAAAACTGTCTTCTAACTGGGTCTTGCACACAGAAGGGGCTTACATCTTGGACTTCACTAATCTATTGCTTATCTTCTCTTTTGAAGAATCACGGGTATAAAGTTGGTCAGCTGGTTCCCTGAAACTGCTGTACGTGTCTCACATACCTATTTCTTGGCTTGTCTTCTGAAAAATCACAGC]
consensusID : consensus_6805#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence
[CCGATATGTTACAAAGGGAGCCGCTTAGGAGATTACCCTCCCCAAAATGCTTGATTATTTCTGTTGGCCGTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCTGGAGATACTGAAACCAGAGGTGAAGCTTTTAGTAAATAACCTTTGCTCTCTCAAGAGATTGGAATTTGATACAACTCATCGTTTCCTTGAGTTTCCCATTTTGCCATCTTTTTTGGAGTCTTTCATTATTAGAAGATGTAATCCAGAGTTGTTGGCCCGCTGGAAAAGGAAAGATAGTTTTGAATGGGACAGGATTTCACTCATCCGCCATATGAGAATAGGAGATGCATACTACAATTTCGGGAAACCAGCGGCCAAATTTTATAGCTGTGATTTTTCAGAAGACAAGACAAGAAATAGGTATGTGAGACACGTACTACAGTTTCAGGGAACCAGCTGACCAACTTTATAGCCGTGATTTTACAAAAGAGAAGATAAGAAATAGATTAGTGAAGTCCAAGATGTAAGCCCCTACTGTGTGCAAGACCCAGTTAGAAGACAGTTTTATTAGTGTGACTGGCTGTGAATCCCTTAACTGTGCCAATGGATTTTTCAGAACTCCAGTCGGTTCCACATATTTTATAGAAATATTTGCAAGGATTGGAGGCCAGTGTCTTGTTTTTCAGTCTCACGCTTGAGGTCCCA]
[-] EMBL CB645282 [CCGATATGTTACAAAGGGAGCCGCTTAGGAGATTACCCTCCCCAAAATGCTTGATTATTTCTGTTGGCCGTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCTGGAGATACTGAAACCAGAGGTGAAGCTTTTAGTAAATAACCTTTGCTCTCTCAAGAGATTGGAATTTGATACAACTCATCGTTTCCTTGAGTTTCCCATTTTGCCATCTTTTTTGGAGTCTTTCATTATTAGAAGATGTAATCCAGAGTTGTTGGCCCGCTGGAAAAGGAAAGATAGTTTTGAATGGGACAGGATTTCACTCATCCGCCATATGAGAATAGGAGATGCATACTACAATTTCGGGAAACCAGCGGCCAAATTTTATAGCTGTGATTTTTCAGAAGACAAGACAAGAAATAGGTATGTGAGACACGTACTACAGTTTCAGGGAACCAGCTGACCAACTTTATAGCCGTGATTTTACAAAAGAGAAGATAAGAAATAGATTAGTGAAGTCCAAGATGTAAGCCCCTACTGTGTGCAAGACCCAGTTAGAAGACAGTTTTATTAGTGTGACTGGCTGTGAATCCCTTAACTGTGCCAATGGATTTTTCAGAACTCCAGTCGGTTCCACATATTTTATAGAAATATTTGCAAGGATTGGAGGCCAGTGTCTTGTTTTTCAGTCTCACGCTTGAGGTCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6805#0 TGTTCCTTCCCATGAAGAGATTATTGAGGCTAAGCTAAGAGATAAATCATATCTTAGATC 60
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 GTTGTCCTTAAACTGGTCTGAGACTACTAATGTATTGAGCCACATTCTCATCTTGAAAAT 120
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 CTGGAAATATCAGGGTATAATGGTCTTCGATTTCCAACTTGGCTAAGCCATCCATGCCTG 180
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 ATAAATATGGTGTCACTAGAGCTGAGAAAATGTAGAAGTTGGGCATACCTCCCAGCTCTT 240
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 GGAAATTTACAGCGGCTCAAGCATCTTGAATTGCACAAACTTGCAGAATTGAAACGGATC 300
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 GACCAATCATCAGGCAATTCCCTGCCCCCAAATCTGAAAACTCTAGTGGTGGAAGGTTGC 360
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 AAAAAATTAGGGGAACTGCCACTTCTACCTTCAAGTTTGACACGGTTAGAAGTAAATGAT 420
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 GTTGGATTGACCACCCTTCCAAGGATATATGACCATCATGTTAACAACATGGATTTTGAA 480
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 AGCAAGGAAACCAAGCTAATCTCAGTTATCATCAGCAACTGCTCAAATTTAATTTCTCTG 540
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 GAGGAAAGCTTTCTACTGCAGGAGCACCATATCCGAAGTCTTCGTATCCTAAGGATTGTT 600
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 GATTGTGAAAAGTTGATCCGAGCTCCTTTGTTATTTTCAGAAATGGATAATCTTGCAGAA 660
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 TTTCATATTGGTAAGTGTTACCGGTTGAGAGTGAGGGAAAACGATGATAATGTACTACTC 720
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 CCCCGCACACTTAAGGAACTCTCCATGGTGCAGTGTGGTGACCTCCAGCTTCCACTGCTG 780
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 GAGTCACTGGTTGGTCTGACTAATCTTACGTCATTGAGTCTGCGTAACTGCGGCAGGGTG 840
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 AGGTCCCTTCCACAGTCAGACGTGTTCCGGAGTCTCAGGTCACTGCGAGAGATGGCTGTG 900
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 GCTGATTGTACTAGCTTGGCATCCTTGGGTGGGCTTGGAGCCCTTTCATATCTCAATTGG 960
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 CTGGAAATCACAGAGTGCCCGAGGCTTCAGGGGTATGCCAGATATGATGAAGTGGATGAA 1020
consensus_6805#2 ------------------------------------------------------------
consensus_6805#1 ------------------------------------------------------------
consensus_6805#0 GATCCGGTGTTGGAGTTCTCCCTGGAGGTCTACTCTCTCTGGATACATACCCCCGATATG 1080
consensus_6805#2 ----------------------------------------------------CCGATATG 8
consensus_6805#1 --------------GTTCAAGCGAGGATTATTTTCTCTTAAAGAGAGTGAATACCAAAAC 46
* * *
consensus_6805#0 TTACAAAGGGAGCCGCTTAGGAGATTACACAACACAAAATGCTTGATTATTTCTGTTGGC 1140
consensus_6805#2 TTACAAAGGGAGCCGCTTAGGAGATTACCCTCCCCAAAATGCTTGATTATTTCTGTTGGC 68
consensus_6805#1 CTCCATATAAAACCACATCATA-ACAATTCTTCAAAAAAAGAA-AAACACTCCCATGGGT 104
* ** * * ** * * * * * * * **** * * * * * * **
consensus_6805#0 C----GTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCT 1196
consensus_6805#2 C----GTGATAACATACCTTGGCAATGGATGCAACAAAATAGAACGTCCCTTGAAACCCT 124
consensus_6805#1 CTAATATGATATTAGACAACCTCATAAAATTAAGATAAAAATAAAATTCATCGATCAGAT 164
* ***** * ** ** ** * *** * ** * * * ** *
consensus_6805#0 GGAGAT-ACTGAAACCAGAGGTGAAGCTTTTAG-TAAATAACCTTTGCTC-TCTCAA--- 1250
consensus_6805#2 GGAGAT-ACTGAAACCAGAGGTGAAGCTTTTAG-TAAATAACCTTTGCTC-TCTCAA--- 178
consensus_6805#1 GAAACTCACTAATATTGAAAAAAAAGAAGCGAAATTAACAATGTTCACACATATCAACTA 224
* * * *** * * * *** * * ** ** ** * * * ****
consensus_6805#0 GAGAT-TGGAATTTGATACAACTCATCGGTTNCTTGA-GTTTNCCATTCTGNCATCTCCT 1308
consensus_6805#2 GAGAT-TGGAATTTGATACAACTCATCGTTTCCTTGA-GTTTCCCATTTTGCCATCTTTT 236
consensus_6805#1 GAGCTCTAAAATAAGAGATCGATCAGCTTTTCCTGGATGACTTTCAGTTCAATACTGGTT 284
*** * * *** ** * *** * ** ** ** * * ** * * *
consensus_6805#0 CTGGAGTCTTTCATTATTAGAAGATGTAATC-------CAGAGTTGNTGGCACGCTGGAA 1361
consensus_6805#2 TTGGAGTCTTTCATTATTAGAAGATGTAATC-------CAGAGTTGTTGGCCCGCTGGAA 289
consensus_6805#1 ---GGCCATTTTACTTTGAGAGGCTACTACTGAACAATCAAGCTTGTTTACCGACAAGGA 341
* *** * * * *** * * * ** *** * * * * *
consensus_6805#0 AAGGAAAGA-TAGTTCTGAATGGGACAGGATTTCACT-CATCCGC-----CATATGAGAA 1414
consensus_6805#2 AAGGAAAGA-TAGTTTTGAATGGGACAGGATTTCACT-CATCCGC-----CATATGAGAA 342
consensus_6805#1 ACGGCATGAACGGATGAACATGTCATTGCATTTTTTTGTGTGTGCATTTCCATCCTTTAA 401
* ** * ** * * *** * * **** * * ** *** **
consensus_6805#0 TAGGAGATGCNTACTACAATTTCGGGAAANCAGCGGACAAANTTT-TAGCTGGGATTCTT 1473
consensus_6805#2 TAGGAGATGCATACTACAATTTCGGGAAACCAGCGGCCAAATTTTATAGCTGTGATTTTT 402
consensus_6805#1 TTCCACATGTGATTCACA--TTCGTGAGACTGAGAAACAAGACAC-TGGCCTCGAATCCT 458
* * *** *** **** ** * *** * ** ** * *
consensus_6805#0 CAAAANACAAGACAANAA-TAGGGNTGGGAGAAACGTNCAACAGNTTTAGGGNACCAGCT 1532
consensus_6805#2 CAGAAGACAAGACAAGAAATAGGTATGTGAGACACGTACTACAGTTTCAGGGAACCAGCT 462
consensus_6805#1 T-GCAGATATTTCTATAA-----AATATGTGGAACTGACTGTAGTTCTGAAGAATCCATT 512
* * * * * ** * * * ** * ** * * * * *
consensus_6805#0 GACCAACTTT-TAGCCGGGATTTTC--AAAGGGNAGTTAG--AATTGNTT---------- 1577
consensus_6805#2 GACCAACTTTATAGCCGTGATTTTACAAAAGAGAAGATAAGAAATAGATTAGTGAAGTCC 522
consensus_6805#1 GGCACAGTTA-AGGTATTCACAGCCAGTCACACTAATAAAACTGTCTTCTAACTGGGTCT 571
* * * ** * * * * * * *
consensus_6805#0 ------------------------------------------------------------
consensus_6805#2 AAGATGTAAGCCCCTACTGTGTGCAAGACCCAGTTAGAAGACAGTTTTATTAGTGTGACT 582
consensus_6805#1 TGCACACAGAAGGGGCTTACATCTTGGACTTCACTAATCTATTGCTTATCTTCTCTTTTG 631
consensus_6805#0 ------------------------------------------------------------
consensus_6805#2 GGCTGTGA-ATCCCTTAACTGTGCCAATGGATTTTTCAGAACTCCAGTCGGTTCCACATA 641
consensus_6805#1 AAGAATCACGGGTATAAAGTTGGTCAGCTGGTTCCCTGAAACTGCTGTACGTGTCTCACA 691
consensus_6805#0 ------------------------------------------------------------
consensus_6805#2 TTTTATAGAAATATTTGCAAGGATTGGAGGCCAGTGTCTTGTTTTTCAGTCTCACGCTTG 701
consensus_6805#1 TACCTATTTCTTGGCTTGTCTTCTGAAAAATCACAGC----------------------- 728
consensus_6805#0 --------
consensus_6805#2 AGGTCCCA 709
consensus_6805#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||