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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1234 fasta sequence
[ACTCCCTCTCTTTCTCTAAGATCTTTTTACCTCACTCGATCAGGTACGACAGCTAAGCTAGCCATCTATCGTTCATGGCTGGTGGTGGTGTGGGAGCATCGGCGGCGGCGGCGGCGACGATACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGTCGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGATCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGGGGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACATCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGAGGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTCTATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATTACTGGGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGAATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGTT]
[+] EMBL AK063329 [ACTCCCTCTCTTTCTCTAAGATCTTTTTACCTCACTCGATCAGGTACGACAGCTAAGCTAGCCATCTATCGTTCATGGCTGGTGGTGGTGTGGGAGCATCGGCGGCGGCGGCGGCGACGATACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGTCGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGATCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGGGGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACATCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGAGGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTCTATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATTACTGGGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGAATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGTT]
[+] EMBL CB655625 [ TGGTGGCGTGGGAGCATCGGCGGCGGCGGCGGCGACGATACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGTCGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGATCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGGGGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACATCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGAGGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTG ]
[-] EMBL CB655626 [ TTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTCTATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATTACTGGGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGAATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGT ]
consensusID : consensus_6831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence
[GTAACTAGTACATAATTGTGTCATGTTTTTAAAATAGAAAATATAGCATTTTTGGTACTTTCTTGAAGACGATAAAATTACCATTATTTTGTTTGTTTTGCATGAGTCTTCATGTACTACTGCAGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCANGGGAAACCGNGATTTCTATGTCCACGAATCTGGNCCATACCAAAACCACTGGTGAGTTTTGGGATGGGCGAGATTACTGGGNCNCAACTAAAAAACTGGTAATGGGGATGCTCAAGACCAANGAATTGGGGTAT]
[+] EMBL CB096831 [GTAACTAGTACATAATTGTGTCATGTTTTTAAAATAGAAAATATAGCATTTTTGGTACTTTCTTGAAGACGATAAAATTACCATTATTTTGTTTGTTTTGCATGAGTCTTCATGTACTACTGCAGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAAGACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGGACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCATTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCCCTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCANGGGAAACCGNGATTTCTATGTCCACGAATCTGGNCCATACCAAAACCACTGGTGAGTTTTGGGATGGGCGAGATTACTGGGNCNCAACTAAAAAACTGGTAATGGGGATGCTCAAGACCAANGAATTGGGGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6831#0 ACTCCCTCTCTTTCTCTAAGATCTTTTTACCTCACTCGATCAGGTACGACAGCTAAGCTA 60
consensus_6831#1 ------------------------------------------------------------
consensus_6831#0 GCCATCTATCGTTCATGGCTGGTGGTGGTGTGGGAGCATCGGCGGCGGCGGCGGCGACGA 120
consensus_6831#1 ------------------------------------------------------------
consensus_6831#0 TACCAGAGGCGGCGCTGAGGTCCGGCAAGCCGATGCCGCTCGTCGGCATGGGCACCGCGT 180
consensus_6831#1 ------------------------------------------------------------
consensus_6831#0 CGTTCCCGTTGGACGCGCCCCAGCTGCCGGCCACCGTCAGGGACGCCGTCCTGCGAGCGA 240
consensus_6831#1 ------------------------------------------------------------
consensus_6831#0 TCGACGCCGGCTACCGCCACTTCGACACGGCGGCGGCGTACGGCACCGAGGCACCCCTGG 300
consensus_6831#1 ------------------------------------------------------------
consensus_6831#0 GGGAGGCCGTGTTGGAGGCCGTGCGCGCCGGCATGGTCGCGTCCCGGGACGACCTCTACA 360
consensus_6831#1 -GTAACTAGTACATAATTGTGT-CATGTTTTTAAAATAGAAAAT-ATAGCATTTTTGGTA 57
* * ** * ** * * * * * * * *
consensus_6831#0 TCACCTCTAAGCTCTGGATCTCCGACACCCACCCCGGCCGTGTCTTGCCGGCGCTCAGGA 420
consensus_6831#1 CTTTCTTGAAGACGATAAAATT--ACCATTATTTTGTTTGTTTTGCATGAGTCTTCATGT 115
** *** * * ** * * ** * * *** *
consensus_6831#0 GGACGCTCCGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAA 480
consensus_6831#1 ACTACTGCAGGAACCTGCAGATGGTTTACATCGACCTATACCTGATTCACTGGCCAATAA 175
* ***************************************************
consensus_6831#0 GACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGG 540
consensus_6831#1 GACTGAGAGTGGAACAAGAAACGCCTTCGCCGGTGTACGACAATGACTTTGTGATGATGG 235
************************************************************
consensus_6831#0 ACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCA 600
consensus_6831#1 ACATGGAGGGAGTTTGGAAGGACATGGAGGAGTGCCAGAGGCTAGGTCTCACCAAAGCCA 295
************************************************************
consensus_6831#0 TTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCC 660
consensus_6831#1 TTGGTGTCAGCAATTTCACCTGCAAGAAGCTTAACACCCTGCTCTCATTTGCAACCATCC 355
************************************************************
consensus_6831#0 CTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGT 720
consensus_6831#1 CTCCTGCAGCAAATCAGGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGT 415
************************************************************
consensus_6831#0 TTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTA 780
consensus_6831#1 TTTGTAAGGAGAAAGAA-TCCAGCTCTGTGCCTACTCTCCTTTAGGAGCAAGTGGCACTA 474
***************** ******************************************
consensus_6831#0 TATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGG 840
consensus_6831#1 TATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAGAAGG 534
************************************************************
consensus_6831#0 GCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCG 900
consensus_6831#1 GCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCG 594
************************************************************
consensus_6831#0 TCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTT-GATTGGGAGCTC 959
consensus_6831#1 TCAAGAGCTTCAATGAGAGAAGAATGAGAGAGAACCTCGAAATTTTTTGATTGGGAGCTC 654
*********************************************** ************
consensus_6831#0 ACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCAGGGGAAACCGTGATTTC 1019
consensus_6831#1 ACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGGAATTCANGGGAAACCGNGATTTC 714
******************************************* ********* ******
consensus_6831#0 TATGTCCACGAATCTGGCCCATAC-AAAACCACTGATGAGTTTTGGGATGG-CGAGATTA 1077
consensus_6831#1 TATGTCCACGAATCTGGNCCATACCAAAACCACTGGTGAGTTTTGGGATGGGCGAGATTA 774
***************** ****** ********** *************** ********
consensus_6831#0 CTGGGCCACAACTAAAAACCTGTTAATGGGC-TGCTCAAGAGCAATGAATTGTGTTATTG 1136
consensus_6831#1 CTGGGNCNCAACTAAAAAACTGGTAATGGGGATGCTCAAGACCAANGAATTGGGGTAT-- 832
***** * ********** *** ******* ********* *** ****** * ***
consensus_6831#0 GTCCAATATACCACTGAGTTGTCTTGCTTATATATATTGTGTAACAGCTGAAAGACTAGA 1196
consensus_6831#1 ------------------------------------------------------------
consensus_6831#0 ATGTACTCTCATTTTTTTCAAATGCAAATCTACCAGTT 1234
consensus_6831#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||