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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1532 fasta sequence
[TATGAGGTTTTTTATTCTGATGACTTCTTCCCTATTCTTGGTCTACATGATTTGTGCACTTTGGGCCAGCTTATCCTACAATCAGCAGTTGGAGTATTGGTGCTAGTGTTCTGCTTTGTTGAGCGAAAGGAATTCTCCATTCAAATTGTGTCAAAGCTTGGAAGCAGCTTCTCTGTGGTGCCTTATGTTATTGTGGTGGCATCTTGTACCATTCTAGCCATAGTTGCTTTGCTGCCAATTGCGCAACTTCTCTTTTTTCACATTCTTCTAATCAAGAAGGGAATTAGTACATATGACTACATCATCGCCATAAGAGAGCAAGAACAAGAAGAGGTTGGTGGGCAGCAGAGTCCACAGATGTCTCGTGTAAGCTCCTACACTGGACTTAGCAGTACAAGTTCCTTTGGTGGACGACGTCGTGGTTCATGGTGTACTCCTCCAAGATTATTTCTTGAAGATCAGTTCGATGTTATTCCGTCAGAGGCTGGTTCATCGCATAATTCTACTTCCAAGAGGAAAGAAGATGAAGTAAGGAGGAAGAAGGGTTCAGGTGGTATAAAAATTAGCCCATGGGCACTCGCTCGTCTTAACGCGGAGGAAGTTTCAAGAGTTGCTGCAGAGGCACGAAAGAAGTCCAAAGTTCTACTGCCCATCAGAAAAGATGAGTATGCAGTTGGCCATGAAACGGACAGTAGCTATGGAGGCACAAGCAGCAGTAGGATTGATCTAGGCCCTGATAACAAGAGGAGAACAAGCAGAAGAGCAAGACCTCACAATGATTTCTCTCTTAAACCTGTTGCCAAGATTTCCGCAGATGCTCTTGATAGTCATGGCAGTGAGTTGGTTCCTGAAACATTATCCAGTTTAGCACCATTGCAGCTTGAGGCGCGAAGCGCTTTTCATCCAAGTAGAGCTGCATCCTCTGCTAATGGTGGTGGTTCATCACCAGACAGCAGCTTGGACTCCCCTGATCTTCATCTGTACCGAGTCTCGGCTGTCTCCTCATCTGCAGCTGAAGACCTGCAGCTGACAACTCTTACAGCCCCAGGAAGCACTCCACAGCAAGGGATTGAGCTGTCAAGATCCACCAGCGACGGGTATGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCAATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCATAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAACTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGACAATGGAATCAATCAGAGGTTGATATATCTTCAGCCTCCTG]
[+] EMBL AK065600 [TATGAGGTTTTTTATTCTGATGACTTCTTCCCTATTCTTGGTCTACATGATTTGTGCACTTTGGGCCAGCTTATCCTACAATCAGCAGTTGGAGTATTGGTGCTAGTGTTCTGCTTTGTTGAGCGAAAGGAATTCTCCATTCAAATTGTGTCAAAGCTTGGAAGCAGCTTCTCTGTGGTGCCTTATGTTATTGTGGTGGCATCTTGTACCATTCTAGCCATAGTTGCTTTGCTGCCAATTGCGCAACTTCTCTTTTTTCACATTCTTCTAATCAAGAAGGGAATTAGTACATATGACTACATCATCGCCATAAGAGAGCAAGAACAAGAAGAGGTTGGTGGGCAGCAGAGTCCACAGATGTCTCGTGTAAGCTCCTACACTGGACTTAGCAGTACAAGTTCCTTTGGTGGACGACGTCGTGGTTCATGGTGTACTCCTCCAAGATTATTTCTTGAAGATCAGTTCGATGTTATTCCGTCAGAGGCTGGTTCATCGCATAATTCTACTTCCAAGAGGAAAGAAGATGAAGTAAGGAGGAAGAAGGGTTCAGGTGGTATAAAAATTAGCCCATGGGCACTCGCTCGTCTTAACGCGGAGGAAGTTTCAAGAGTTGCTGCAGAGGCACGAAAGAAGTCCAAAGTTCTACTGCCCATCAGAAAAGATGAGTATGCAGTTGGCCATGAAACGGACAGTAGCTATGGAGGCACAAGCAGCAGTAGGATTGATCTAGGCCCTGATAACAAGAGGAGAACAAGCAGAAGAGCAAGACCTCACAATGATTTCTCTCTTAAACCTGTTGCCAAGATTTCCGCAGATGCTCTTGATAGTCATGGCAGTGAGTTGGTTCCTGAAACATTATCCAGTTTAGCACCATTGCAGCTTGAGGCGCGAAGCGCTTTTCATCCAAGTAGAGCTGCATCCTCTGCTAATGGTGGTGGTTCATCACCAGACAGCAGCTTGGACTCCCCTGATCTTCATCTGTACCGAGTCTCGGCTGTCTCCTCATCTGCAGCTGAAGACCTGCAGCTGACAACTCTTACAGCCCCAGGAAGCACTCCACAGCAAGGGATTGAGCTGTCAAGATCCACCAGCGACGGGTATGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCAATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCATAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAACTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGACAATGGAATCAATCAGAGGTTGATATATCTTCAGCCTCCTG]
[+] EMBL AK103165 [TATGAGGTTTTTTATTCTGATGACTTCTTCCCTATTCTTGGTCTACATGATTTGTGCACTTTGGGCCAGCTTATCCTACAATCAGCAGTTGGAGTATTGGTGCTAGTGTTCTGCTTTGTTGAGCGAAAGGAATTCTCCATTCAAATTGTGTCAAAGCTTGGAAGCAGCTTCTCTGTGGTGCCTTATGTTATTGTGGTGGCATCTTGTACCATTCTAGCCATAGTTGCTTTGCTGCCAATTGCGCAACTTCTCTTTTTTCACATTCTTCTAATCAAGAAGGGAATTAGTACATATGACTACATCATCGCCATAAGAGAGCAAGAACAAGAAGAGGTTGGTGGGCAGCAGAGTCCACAGATGTCTCGTGTAAGCTCCTACACTGGACTTAGCAGTACAAGTTCCTTTGGTGGACGACGTCGTGGTTCATGGTGTACTCCTCCAAGATTATTTCTTGAAGATCAGTTCGATGTTATTCCGTCAGAGGCTGGTTCATCGCATAATTCTACTTCCAAGAGGAAAGAAGATGAAGTAAGGAGGAAGAAGGGTTCAGGTGGTATAAAAATTAGCCCATGGGCACTCGCTCGTCTTAACGCGGAGGAAGTTTCAAGAGTTGCTGCAGAGGCACGAAAGAAGTCCAAAGTTCTACTGCCCATCAGAAAAGATGAGTATGCAGTTGGCCATGAAACGGACAGTAGCTATGGAGGCACAAGCAGCAGTAGGATTGATCTAGGCCCTGATAACAAGAGGAGAACAAGCAGAAGAGCAAGACCTCACAATGATTTCTCTCTTAAACCTGTTGCCAAGATTTCCGCAGATGCTCTTGATAGTCATGGCAGTGAGTTGGTTCCTGAAACATTATCCAGTTTAGCACCATTGCAGCTTGAGGCGCGAAGCGCTTTTCATCCAAGTAGAGCTGCATCCTCTGCTAATGGTGGTGGTTCATCACCAGACAGCAGCTTGGACTCCCCTGATCTTCATCTGTACCGAGTCTCGGCTGTCTCCTCATCTGCAGCTGAAGACCTGCAGCTGACAACTCTTACAGCCCCAGGAAGCACTCCACAGCAAGGGATTGAGCTGTCAAGATCCACCAGCGACGGGTATGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCAATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCATAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAACTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGACAATGGAATCAATCAGAGGTTGATATATCTTCAGCCTCCTG]
consensusID : consensus_6854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence
[TTACANCCCCAGGAAGCACTCCCACAGCAAGGGATTGAGCTNTCAAGATCCACCAGCGACGGGTNTGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCAATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCNTAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAACTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGACAATGGAATCAATCAGAGGTTGATATAAAAAAAAAAAAAAAAA]
[+] EMBL AU077905 [TTACANCCCCAGGAAGCACTCCCACAGCAAGGGATTGAGCTNTCAAGATCCACCAGCGACGGGTNTGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCAATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCNTAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAACTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGACAATGGAATCAATCAGAGGTTGATATAAAAAAAAAAAAAAAAA]
consensusID : consensus_6854#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence
[CCGGTTTTCTTGACTCCCAGAATCAGATGTCCATCCGTCAGCATTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGCTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCCATAGTTTCAAATCTGTGTCTCCACGACGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTCGGTGAACTCTGAATTGTTAGGTAGGGAAAGACCACGTTGATTCACTTCGTGGTGCATCCCAAATGGTTGTAATTTTGCTCTCAGATGNCCATGGAATCAATCAGAGTTGATATATCTTCACCCTCCTGGGTTAATCCCCAAAAAAAAAA]
[+] EMBL BM420309 [CCGGTTTTCTTGACTCCCAGAATCAGATGTCCATCCGTCAGCATTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGCTGTAGATTGTCTCGTTTTCCATCGGTTTCTGGTCCTCCCATAGTTTCAAATCTGTGTCTCCACGACGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTCGGTGAACTCTGAATTGTTAGGTAGGGAAAGACCACGTTGATTCACTTCGTGGTGCATCCCAAATGGTTGTAATTTTGCTCTCAGATGNCCATGGAATCAATCAGAGTTGATATATCTTCACCCTCCTGGGTTAATCCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6854#0 TATGAGGTTTTTTATTCTGATGACTTCTTCCCTATTCTTGGTCTACATGATTTGTGCACT 60
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 TTGGGCCAGCTTATCCTACAATCAGCAGTTGGAGTATTGGTGCTAGTGTTCTGCTTTGTT 120
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 GAGCGAAAGGAATTCTCCATTCAAATTGTGTCAAAGCTTGGAAGCAGCTTCTCTGTGGTG 180
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 CCTTATGTTATTGTGGTGGCATCTTGTACCATTCTAGCCATAGTTGCTTTGCTGCCAATT 240
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 GCGCAACTTCTCTTTTTTCACATTCTTCTAATCAAGAAGGGAATTAGTACATATGACTAC 300
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 ATCATCGCCATAAGAGAGCAAGAACAAGAAGAGGTTGGTGGGCAGCAGAGTCCACAGATG 360
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 TCTCGTGTAAGCTCCTACACTGGACTTAGCAGTACAAGTTCCTTTGGTGGACGACGTCGT 420
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 GGTTCATGGTGTACTCCTCCAAGATTATTTCTTGAAGATCAGTTCGATGTTATTCCGTCA 480
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 GAGGCTGGTTCATCGCATAATTCTACTTCCAAGAGGAAAGAAGATGAAGTAAGGAGGAAG 540
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 AAGGGTTCAGGTGGTATAAAAATTAGCCCATGGGCACTCGCTCGTCTTAACGCGGAGGAA 600
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 GTTTCAAGAGTTGCTGCAGAGGCACGAAAGAAGTCCAAAGTTCTACTGCCCATCAGAAAA 660
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 GATGAGTATGCAGTTGGCCATGAAACGGACAGTAGCTATGGAGGCACAAGCAGCAGTAGG 720
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 ATTGATCTAGGCCCTGATAACAAGAGGAGAACAAGCAGAAGAGCAAGACCTCACAATGAT 780
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 TTCTCTCTTAAACCTGTTGCCAAGATTTCCGCAGATGCTCTTGATAGTCATGGCAGTGAG 840
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 TTGGTTCCTGAAACATTATCCAGTTTAGCACCATTGCAGCTTGAGGCGCGAAGCGCTTTT 900
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 CATCCAAGTAGAGCTGCATCCTCTGCTAATGGTGGTGGTTCATCACCAGACAGCAGCTTG 960
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 GACTCCCCTGATCTTCATCTGTACCGAGTCTCGGCTGTCTCCTCATCTGCAGCTGAAGAC 1020
consensus_6854#1 ------------------------------------------------------------
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 CTGCAGCTGACAACTCTTACAGCCCCAGGAAGCACTCC-ACAGCAAGGGATTGAGCTGTC 1079
consensus_6854#1 ----------------TTACANCCCCAGGAAGCACTCCCACAGCAAGGGATTGAGCTNTC 44
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 AAGATCCACCAGCGACGGGTATGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATC 1139
consensus_6854#1 AAGATCCACCAGCGACGGGTNTGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATC 104
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 GCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGT 1199
consensus_6854#1 GCGGATAGTTCATCGATCTTCGAACTGGGCAAGCATCATCCTCAGTTCTGATCAAAGTGT 164
consensus_6854#2 ------------------------------------------------------------
consensus_6854#0 GGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCC--AAATCAATT-- 1255
consensus_6854#1 GGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCC--AAATCAATT-- 220
consensus_6854#2 ------------------------------CCGGTTTTCTTGACTCCCAGAATCAGATGT 30
* **** ********** ***** *
consensus_6854#0 CCATCC-TCAGC-TTCTTTCAGATGAATGAAAAATTGTAAATGGTCCG-TGTAGATTGTC 1312
consensus_6854#1 CCATCC-TCAGC-TTCTTTCAGATGAATGAAAAATTGTAAATGGTCCG-TGTAGATTGTC 277
consensus_6854#2 CCATCCGTCAGCATTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGCTGTAGATTGTC 90
****** ***** *********************************** ***********
consensus_6854#0 TCGTTTTCCATCGGTTTCTGGTCCTCC-ATAGTTTCAAATCT-TGTCTC---AGAGATGG 1367
consensus_6854#1 TCGTTTTCCATCGGTTTCTGGTCCTCC-NTAGTTTCAAATCT-TGTCTC---AGAGATGG 332
consensus_6854#2 TCGTTTTCCATCGGTTTCTGGTCCTCCCATAGTTTCAAATCTGTGTCTCCACGACGATGG 150
*************************** ************* ****** *****
consensus_6854#0 TTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTT-GGTGAACTCTGAATTGTTAG 1426
consensus_6854#1 TTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTT-GGTGAACTCTGAATTGTTAG 391
consensus_6854#2 TTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTCGGTGAACTCTGAATTGTTAG 210
*************************************** ********************
consensus_6854#0 GTAGGGAAAGA--GAGTTGATTCA-TTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTC 1483
consensus_6854#1 GTAGGGAAAGA--GAGTTGATTCA-TTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTC 448
consensus_6854#2 GTAGGGAAAGACCACGTTGATTCACTTCGTGGTGCATCCCAAATGGTTGTAATTTTGCTC 270
*********** ********* ************** ********************
consensus_6854#0 TCAGATGACAATGGAATCAATCAGAGGTTGATATATCTTCAGCCTCCTG----------- 1532
consensus_6854#1 TCAGATGACAATGGAATCAATCAGAGGTTGATATAAAAAAAAAAAAAAAAA--------- 499
consensus_6854#2 TCAGATGNCCATGGAATCAATCAGAG-TTGATATATCTTCACCCTCCTGGGTTAATCCCC 329
******* * **************** ******** *
consensus_6854#0 ----------
consensus_6854#1 ----------
consensus_6854#2 AAAAAAAAAA 339
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||