cluster # 6867

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Oryza sativa
cluster # 6867 cluster # 6867 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6867#0 length = 683 sequences # 3

consensus_6867#1 length = 507 sequences # 1

consensusID : consensus_6867#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 683
fasta sequence

                              [GTCGTCGGCGCAGATCTCCGGCTCCTCCATCCATCAGTCTCTCTCTCTCGCTTTCCATCCCCTTCTTCGTTGGCCGGGACTCTTCCTTCCCCCCATGAACTCTAGGAGGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTCTTCTCAAATTCATGAGCATGAGAATGACCAAGCTATGGACAGTCTGCATGACAGGGTCAGCGTTCTCAAAAGATTGACAGGAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATGGGTAATGAT-ATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCATTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTA-GAAGAATTGTCTGACTCTGCCTTTCATTTTCCTCTTGCTTGCACGTAAAGTACATGGCTGACGGTGTTTATCAAGTTTTGTGCACTTGATGACCGAACATTTGAGAATTTTATCTCAAACTGTGTGGATTGATTGTAAGGCGAGCTGAACGTTTTCTGAATGTGGTGAGAACTGTTGTAAAACTTTGTGACGGCAAAAGATGAGTTACGAGTTGATGATAAAAA]

[+] EMBL AK062315             [GTCGTCGGCGCAGATCTCCGGCTCCTCCATCCATCAGTCTCTCTCTCTCGCTTTCCATCCCCTTCTTCGTTGGCCGGGACTCTTCCTTCCCCCCATGAACTCTAGGAGGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTCTTCTCAAATTCATGAGCATGAGAATGACCAAGCTATGGACAGTCTGCATGACAGGGTCAGCGTTCTCAAAAGATTGACAGGAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATGGGTAATGAT ATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCATTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTA GAAGAATTGTCTGACTCTGCCTTTCATTTTCCTCTTGCTTGCACGTAAAGTACATGGCTGACGGTGTTTATCAAGTTTTGTGCACTTGATGACCGAACATTTGAGAATTTTATCTCAAACTGTGTGGATTGATTGTAAGGCGAGCTGAACGTTTTCTGAATGTGGTGAGAACTGTTGTAAAACT                                        ]
[+] EMBL OSR04042A            [                                                                                        CCCCCCATGAACTCTAGGAGGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTCTTCTCAAATTCATGAGCATGAGAATGACCAAGCTATGGACAGTCTGCATGACAGGGTCAGCGTTCTCAAAAGATTGACAGGAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATGGGTAATGAT ATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCATTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTAGGNAGAATTGTCTGACTCTGCCTTTCATTTTCCTCT                                                                                                                                                                                             ]
[+] EMBL AU031664             [                                                                                                                                                                                                                                                                                                                    TGGGTAATGATAATGGATNCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGGTTTTTGAGACNAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCATTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTA GAAGAATTGTCTGACTCTGCCTTTCATTTTCCTCTTGCTTGCACGTAAAGTACATGGCTGACGGTGTTTATCAAGTTTTGTGCACTTGATGACCGAACATTTGAGAATTTTATCTCAAACTGTGTGGATTGATTGTAAGGCGAGCTGAACGTTTTCTGAATGTGGTGAGAACTGTTNTAAAACTTTGTGACGGCAAAAGATGAGTTACGAGTTGATGATAAAAA]




>consensus_6867#0
GTCGTCGGCGCAGATCTCCGGCTCCTCCATCCATCAGTCTCTCTCTCTCGCTTTCCATCC
CCTTCTTCGTTGGCCGGGACTCTTCCTTCCCCCCATGAACTCTAGGAGGGACTTCCGCAG
CCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTC
TTCTCAAATTCATGAGCATGAGAATGACCAAGCTATGGACAGTCTGCATGACAGGGTCAG
CGTTCTCAAAAGATTGACAGGAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCT
GGACAGAATGGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAA
GTTTAAGATGGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTT
CATTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTAGAAGAATTGTCTGACTCTGCC
TTTCATTTTCCTCTTGCTTGCACGTAAAGTACATGGCTGACGGTGTTTATCAAGTTTTGT
GCACTTGATGACCGAACATTTGAGAATTTTATCTCAAACTGTGTGGATTGATTGTAAGGC
GAGCTGAACGTTTTCTGAATGTGGTGAGAACTGTTGTAAAACTTTGTGACGGCAAAAGAT
GAGTTACGAGTTGATGATAAAAA

consensusID : consensus_6867#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [TGGCCGGGACTCTTCCTTCCCCCCATGAACTCTAGGAGGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTCTTCTCAAATTCATGAGCATGAGAATGACCAAGCTATGGACAGTCTGCATGACAGGGTCAGCGTTCTCAAAAGATTGACAGGAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATGGTACTAATATCCTGCAAGATGCTATCTTTCTTGTCACTACTCTCTAATGCATTTCTTTGCTATTTAGGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCANTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTAGAAGAATTGTCTGACTCTGCCTTTCATNTTCCTCTTGCTTGCACGTAAAGT]

[+] EMBL C74958               [TGGCCGGGACTCTTCCTTCCCCCCATGAACTCTAGGAGGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTCTTCTCAAATTCATGAGCATGAGAATGACCAAGCTATGGACAGTCTGCATGACAGGGTCAGCGTTCTCAAAAGATTGACAGGAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATGGTACTAATATCCTGCAAGATGCTATCTTTCTTGTCACTACTCTCTAATGCATTTCTTTGCTATTTAGGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATGGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCANTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTAGAAGAATTGTCTGACTCTGCCTTTCATNTTCCTCTTGCTTGCACGTAAAGT]




>consensus_6867#1
TGGCCGGGACTCTTCCTTCCCCCCATGAACTCTAGGAGGGACTTCCGCAGCCACAGAGCT
GCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTCTTCTCAAATT
CATGAGCATGAGAATGACCAAGCTATGGACAGTCTGCATGACAGGGTCAGCGTTCTCAAA
AGATTGACAGGAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATG
GTACTAATATCCTGCAAGATGCTATCTTTCTTGTCACTACTCTCTAATGCATTTCTTTGC
TATTTAGGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTT
TAAGATGGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGGCTTCTTTCAN
TTCTGTCTTCTTCCTTATATACTACCTAACCAAGTAGAAGAATTGTCTGACTCTGCCTTT
CATNTTCCTCTTGCTTGCACGTAAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6867#0      GTCGTCGGCGCAGATCTCCGGCTCCTCCATCCATCAGTCTCTCTCTCTCGCTTTCCATCC 60
consensus_6867#1      ------------------------------------------------------------
                                                                                  

consensus_6867#0      CCTTCTTCGTTGGCCGGGACTCTTCCTTCCCCCCATGAACTCTAGGAGGGACTTCCGCAG 120
consensus_6867#1      ----------TGGCCGGGACTCTTCCTTCCCCCCATGAACTCTAGGAGGGACTTCCGCAG 50
                                **************************************************

consensus_6867#0      CCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTC 180
consensus_6867#1      CCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTC 110
                      ************************************************************

consensus_6867#0      TTCTCAAATTCATGAGCATGAGAATGACCAAGCTATGGACAGTCTGCATGACAGGGTCAG 240
consensus_6867#1      TTCTCAAATTCATGAGCATGAGAATGACCAAGCTATGGACAGTCTGCATGACAGGGTCAG 170
                      ************************************************************

consensus_6867#0      CGTTCTCAAAAGATTGACAGGAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCT 300
consensus_6867#1      CGTTCTCAAAAGATTGACAGGAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCT 230
                      ************************************************************

consensus_6867#0      GGACAGAATGG------------------------------------------------- 311
consensus_6867#1      GGACAGAATGGTACTAATATCCTGCAAGATGCTATCTTTCTTGTCACTACTCTCTAATGC 290
                      ***********                                                 

consensus_6867#0      ------------------GTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGG 353
consensus_6867#1      ATTTCTTTGCTATTTAGGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGG 350
                                        ******************************************

consensus_6867#0      TGGACAAGTTTAAGATGGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGG 413
consensus_6867#1      TGGACAAGTTTAAGATGGTTTTTGAGACCAAAGCAAGTCGCAGAATGGCTACCATGGTGG 410
                      ************************************************************

consensus_6867#0      CTTCTTTCATTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTAGAAGAATTGTCTGA 473
consensus_6867#1      CTTCTTTCANTTCTGTCTTCTTCCTTATATACTACCTAACCAAGTAGAAGAATTGTCTGA 470
                      ********* **************************************************

consensus_6867#0      CTCTGCCTTTCATTTTCCTCTTGCTTGCACGTAAAGTACATGGCTGACGGTGTTTATCAA 533
consensus_6867#1      CTCTGCCTTTCATNTTCCTCTTGCTTGCACGTAAAGT----------------------- 507
                      ************* ***********************                       

consensus_6867#0      GTTTTGTGCACTTGATGACCGAACATTTGAGAATTTTATCTCAAACTGTGTGGATTGATT 593
consensus_6867#1      ------------------------------------------------------------
                                                                                  

consensus_6867#0      GTAAGGCGAGCTGAACGTTTTCTGAATGTGGTGAGAACTGTTGTAAAACTTTGTGACGGC 653
consensus_6867#1      ------------------------------------------------------------
                                                                                  

consensus_6867#0      AAAAGATGAGTTACGAGTTGATGATAAAAA 683
consensus_6867#1      ------------------------------