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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1217 fasta sequence
[TAGAAGCGATTCGCGCGCGCCGCCGCCTCCTCCCCTCCCCTTCCCCGGAGCGAAGCCGCCCCGCCGGGGGGGATGTCGCCGGCGGCGGACAGCGCGGCGTCGAAGCGGCAGGCGGAGCTGCTCAAGCAGGAGGGCAACGCCTTCTTCAAGAAGGACCGCATCAGCGCCGCCATCGACGCCTACACCGGGGCCATAGCTCTCTGCCCAAAGGTTGCAGTATATTGGACCAACCGAGCACTTTGCTACAAGAGGCGGAATGAGTGGGTTAGGGCTGAGGAAGATTGTAGAAC-AGCTATTCAGCTTGACAGCCACTCTGTTAAGGCACATTACATGCTCGGGCTTGCACTTCTCAACAAGGACGAATTGGCCGAGGGAATAAAAGAACTAGAGAAGTCGTTGGAGCTTGGAAGGGGTGCACATCCAGCAAGTTACATGGTTGAAGAGATCTGGCAAGAGCTTTCTAAAGCAAAATACATAGAATGGGAAAATTTATCAAGCGAACGAGTCCGTCAATTGCATAAGCTGAAGGAAGCATGTAAAGAAGCTCTTAGGAATTATAACAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGAACAGCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGTACAACCTGCCTTTGACACTGCTTACTTCCGTGCCCTGACTGGCTTAATCTGAAAAGAAAAGAACTATTTTATATGCAGGTTCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTCAGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGGTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCTTACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTTCAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTACATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTAGCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCCACAGTAAAAGAAAATTAA]
[+] EMBL AK106523 [TAGAAGCGATTCGCGCGCGCCGCCGCCTCCTCCCCTCCCCTTCCCCGGAGCGAAGCCGCCCCGCCGGGGGGGATGTCGCCGGCGGCGGACAGCGCGGCGTCGAAGCGGCAGGCGGAGCTGCTCAAGCAGGAGGGCAACGCCTTCTTCAAGAAGGACCGCATCAGCGCCGCCATCGACGCCTACACCGGGGCCATAGCTCTCTGCCCAAAGGTTGCAGTATATTGGACCAACCGAGCACTTTGCTACAAGAGGCGGAATGAGTGGGTTAGGGCTGAGGAAGATTGTAGAAC AGCTATTCAGCTTGACAGCCACTCTGTTAAGGCACATTACATGCTCGGGCTTGCACTTCTCAACAAGGACGAATTGGCCGAGGGAATAAAAGAACTAGAGAAGTCGTTGGAGCTTGGAAGGGGTGCACATCCAGCAAGTTACATGGTTGAAGAGATCTGGCAAGAGCTTTCTAAAGCAAAATACATAGAATGGGAAAATTTATCAAGCGAACGAGTCCGTCAATTGCATAAGCTGAAGGAAGCATGTAAAGAAGCTCTTAGGAATTATAACAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGAACAGCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGTACAACCTGCCTTTGACACTGCTTACTTCCGTGCCCTGACTGGCTTAATCTGAAAAGAAAAGAACTATTTTATATGCAGGTTCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTCAGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGGTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCTTACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTTCAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTACATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTAGCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCCACAGTAAAAGAAAATTAA]
[+] EMBL AU081544 [ CGCGCGCCGCCGCCTCCTCCCCTCCCCTTCCCCGGAGCGAAGCCGCCCCGCCGGGGGGGATGTCGCCGGCGGCGGACAGCGCGGCGTCGAAGCGGCAGGCGGAGCTGCTCAAGCAGGAGGGCAACGCCTTCTTCAAGAAGGACCGCATCAGCGCCGCCATCGACGCCTACACCGGGGCCATAGCTCTCTGCCCAAAGGTTGCAGTATATTGGACCAACCGAGCACTTTGCTACAAGAGGCGGAATGAGTGGGTTAGGGCTGANGAAGATTGTAGAACAAGCTATTCAGCTTGACAGCCACTCTGNTAAGGCACATTACATGCTCGGGC ]
consensusID : consensus_7109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[GAAAATTTATCCAAGCGAACGAGTCNGTCAATTGCATAAGTTAAAGNAAGCATGTAAAGAAGCTCTTAGGAATTATACCAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGACCAGCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGTTCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTCAGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGGTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCTTACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTTCAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTACATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTAGCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCCACAGTAAAAGAAAATTAAAGTGGCTGTCATAAAAAAAA]
[+] EMBL AU081545 [GAAAATTTATCCAAGCGAACGAGTCNGTCAATTGCATAAGTTAAAGNAAGCATGTAAAGAAGCTCTTAGGAATTATACCAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGACCAGCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGTTCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTCAGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGGTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCTTACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTTCAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTACATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTAGCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCCACAGTAAAAGAAAATTAAAGTGGCTGTCATAAAAAAAA]
consensusID : consensus_7109#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[TAGAACAGCTATTCAGCTTGACAGCCACTCTGTTAAGGCACATTACATGCTCGGGCTTGCACTTCTCAACAAGGACGAATTGGCCGAGGGAATAAAAGAACTAGAGAAGTCGTTGGAGCTTGGAAGGGGTGCACATCCAGCAAGTTACATGGTTGAAGAGATCTGGCAAGAGCTTTCTAAAGCAAAATACATAGAATGGGAAAATTTATCAAGCGAACGAGTCCGTCAATTGCATAAGCTTGAAGGAAGCATGTAAAGAACTCTTAGGAATTATAACAGCCTTGGACAATCCTCCTGGCATATGTCCCCGAGGAACAGCTAAATGGACTTTGAGGAAGTTTTCGGATGCCAGGAGTCTGATATTCCAACAGAGTTCCTGATCATCTCTGCTGCCAATTACTCTTGATATTTTCCAGAAANCCCGGTGATAACCCCCAGTGGGA]
[+] EMBL C73166 [TAGAACAGCTATTCAGCTTGACAGCCACTCTGTTAAGGCACATTACATGCTCGGGCTTGCACTTCTCAACAAGGACGAATTGGCCGAGGGAATAAAAGAACTAGAGAAGTCGTTGGAGCTTGGAAGGGGTGCACATCCAGCAAGTTACATGGTTGAAGAGATCTGGCAAGAGCTTTCTAAAGCAAAATACATAGAATGGGAAAATTTATCAAGCGAACGAGTCCGTCAATTGCATAAGCTTGAAGGAAGCATGTAAAGAACTCTTAGGAATTATAACAGCCTTGGACAATCCTCCTGGCATATGTCCCCGAGGAACAGCTAAATGGACTTTGAGGAAGTTTTCGGATGCCAGGAGTCTGATATTCCAACAGAGTTCCTGATCATCTCTGCTGCCAATTACTCTTGATATTTTCCAGAAANCCCGGTGATAACCCCCAGTGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7109#0 TAGAAGCGATTCGCGCGCGCCGCCGCCTCCTCCCCTCCCCTTCCCCGGAGCGAAGCCGCC 60
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 CCGCCGGGGGGGATGTCGCCGGCGGCGGACAGCGCGGCGTCGAAGCGGCAGGCGGAGCTG 120
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 CTCAAGCAGGAGGGCAACGCCTTCTTCAAGAAGGACCGCATCAGCGCCGCCATCGACGCC 180
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 TACACCGGGGCCATAGCTCTCTGCCCAAAGGTTGCAGTATATTGGACCAACCGAGCACTT 240
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 TGCTACAAGAGGCGGAATGAGTGGGTTAGGGCTGAGGAAGATTGTAGAACAGCTATTCAG 300
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 CTTGACAGCCACTCTGTTAAGGCACATTACATGCTCGGGCTTGCACTTCTCAACAAGGAC 360
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 GAATTGGCCGAGGGAATAAAAGAACTAGAGAAGTCGTTGGAGCTTGGAAGGGGTGCACAT 420
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 CCAGCAAGTTACATGGTTGAAGAGATCTGGCAAGAGCTTTCTAAAGCAAAATACATAGAA 480
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 TGGGAAAATTTATC-AAGCGAACGAGTCCGTCAATTGCATAAGCTGAAGGAAGCATGTAA 539
consensus_7109#1 ---GAAAATTTATCCAAGCGAACGAGTCNGTCAATTGCATAAGTTAAAGNAAGCATGTAA 57
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 AGAAGCTCTTAGGAATTATAACAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGAACA 599
consensus_7109#1 AGAAGCTCTTAGGAATTATACCAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGACCA 117
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 GCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGT 659
consensus_7109#1 GCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGT 177
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 ACAACCTGCCTTTGACACTGCTTACTTCCGTGCCCTGACTGGCTTAATCTGAAAAGAAAA 719
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 GAACTATTTTATATGCAGGTTCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTC 779
consensus_7109#1 --------------------TCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTC 217
consensus_7109#2 --------------------------------------TAGAACAGCTATTCAGCTTGAC 22
* ** ** ** * ** *
consensus_7109#0 AGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCAT 839
consensus_7109#1 AGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCAT 277
consensus_7109#2 AGCCACTCTGTTAAGGCAC--------ATTACATGCTCG-GGCTTGCACTTCTCAACAAG 73
** ** * ** * * * ** ** * * ** * **** * *
consensus_7109#0 CTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTG 899
consensus_7109#1 CTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTG 337
consensus_7109#2 GACGAATTGGCCGAGGGAATAAA----AGAACTAGAGAAGTCGTTGGAGCTTG--GAAGG 127
* ** * * * * ** * ** *** * * * *
consensus_7109#0 GTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCT 959
consensus_7109#1 GTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCT 397
consensus_7109#2 GGTGCACATCCAGCAAGTTACATGGTTG---AAGAGATCTGGCAAGAGCTTTCTAAAGCA 184
* * * * * ** * * * ** * * * * * ** * * * **
consensus_7109#0 TACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTT 1019
consensus_7109#1 TACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTT 457
consensus_7109#2 AAATACATAGAATGGGAA-----AATTTATCAAGCGAACGAGTCCGTCAATTGCATAAGC 239
* ** *** * **** * * * * * * * * *
consensus_7109#0 CAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTA 1079
consensus_7109#1 CAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTA 517
consensus_7109#2 TTGAAGGAAGCATGTAAAGAACTCTTAGGAATTATAACAGCCTTGGACAATCC-TCCTGG 298
** * * ** * * **** * *** * * * ** *
consensus_7109#0 CATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTA 1139
consensus_7109#1 CATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTA 577
consensus_7109#2 CATATGTCCCCGAGGAACAG-------CTAAATGGACTTTGAGGAAGTTTTCGGATGCCA 351
***** * * **** ** ** * ** ** * ** * * *
consensus_7109#0 GCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCC 1199
consensus_7109#1 GCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCC 637
consensus_7109#2 GGAGTCTGATATTCCAACAGAGTTCCTG-ATCATCTCTGCTGCCA----ATTACTC-TTG 405
* ** * * ** **** ** * ** ** * ** ** *** *
consensus_7109#0 ACAGTAAAAGAAAATTAA-------------------- 1217
consensus_7109#1 ACAGTAAAAGAAAATTAAAGTGGCTGTCATAAAAAAAA 675
consensus_7109#2 ATATTTTCCAGAAANCCCGGTGATAACCCCCAGTGGGA 443
* * * ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||