cluster # 7355

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Oryza sativa
cluster # 7355 cluster # 7355 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7355#0 length = 393 sequences # 2

consensus_7355#1 length = 354 sequences # 1
consensus_7355#2 length = 284 sequences # 1

consensusID : consensus_7355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 393
fasta sequence

                              [GAAGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCACCACG-TGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAGCGGCCGCTC]

[+] EMBL CB966925             [GAAGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCACCACG TGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAG         ]
[+] EMBL BI306722             [  AGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAGCGGCCGCTC]




>consensus_7355#0
GAAGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGC
CACCACGTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGG
ATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGC
TTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTT
TAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGA
GTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATG
ATAACAAAAAAAAAAAAAACAGAGCGGCCGCTC

consensusID : consensus_7355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [AAGGACGCGGCGCGGCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAG]

[+] EMBL CB967309             [AAGGACGCGGCGCGGCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAG]




>consensus_7355#1
AAGGACGCGGCGCGGCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGC
TTGAGACGCTGAGGGCTGCTCTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTG
ATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGGGAAGGAGTATGAAGGTTTGG
AAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGG
GTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAAC
TTGGTCATGATTCAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAG

consensusID : consensus_7355#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [AGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTATGGTTTGGACTGTTGATGACTCAAGCGAAGCAAGAACGCTGACTGTAGAACAGTGACTGTGGAACTCTGGCGGAGCCTTGTTCCTGGCGAAGGAGCTATGAACGGTTCGGAAACTAGACTGGGCCACGAAGATGGCACAGACCTTTAACACGGACTGACACGAAGTGCATGC]

[+] EMBL CB965989             [AGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTATGGTTTGGACTGTTGATGACTCAAGCGAAGCAAGAACGCTGACTGTAGAACAGTGACTGTGGAACTCTGGCGGAGCCTTGTTCCTGGCGAAGGAGCTATGAACGGTTCGGAAACTAGACTGGGCCACGAAGATGGCACAGACCTTTAACACGGACTGACACGAAGTGCATGC]




>consensus_7355#2
AGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGCCA
CCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTATGGTTTGG
ACTGTTGATGACTCAAGCGAAGCAAGAACGCTGACTGTAGAACAGTGACTGTGGAACTCT
GGCGGAGCCTTGTTCCTGGCGAAGGAGCTATGAACGGTTCGGAAACTAGACTGGGCCACG
AAGATGGCACAGACCTTTAACACGGACTGACACGAAGTGCATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7355#0      GAAGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGC 60
consensus_7355#1      -------------------------------AAGGACGCGGCGCGGCAGACACACAAAGC 29
consensus_7355#2      --AGGACGCGGCGCGGGGCGGCAGCCACTCCCGGGCAAAGGTTTTTCAGACACACAAAGC 58
                                                       **    **     **************

consensus_7355#0      CACCACGT-GCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCT-TGGTTT 118
consensus_7355#1      CACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCT-TGGTTT 88
consensus_7355#2      CACCACGTTGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTATGGTTT 118
                      ******** ******************************************** ******

consensus_7355#0      GGA-TGTTGATGA-TAAAGCGAAG-AAGAACGCTGA-TGTAGAA-AGTGA-TGTGGAA-T 171
consensus_7355#1      GGA-TGTTGATGA-TAAAGCGAAG-AAGAACGCTGA-TGTAGAA-AGTGA-TGTGGAA-T 141
consensus_7355#2      GGACTGTTGATGACTCAAGCGAAGCAAGAACGCTGACTGTAGAACAGTGACTGTGGAACT 178
                      *** ********* * ******** *********** ******* ***** ******* *

consensus_7355#0      CTGG-GGAGC-TTGTTCCTGG-GAAGGAG-TATGAA-GGTTTGGAAA-TAGA-TGGGCCA 224
consensus_7355#1      CTGG-GGAGC-TTGTTCCTGG-GAAGGAG-TATGAA-GGTTTGGAAA-TAGA-TGGGCCA 194
consensus_7355#2      CTGGCGGAGCCTTGTTCCTGGCGAAGGAGCTATGAACGGTTCGGAAACTAGACTGGGCCA 238
                      **** ***** ********** ******* ****** **** ***** **** *******

consensus_7355#0      -GAAGATGGCA-AGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATA 282
consensus_7355#1      -GAAGATGGCA-AGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGGGTAAGAAGGATA 252
consensus_7355#2      CGAAGATGGCACAGACCTTTAACACGGACTGA---CACGAAGTGCATGC----------- 284
                       ********** **** ** **    *** **   ** * *  * * *            

consensus_7355#0      AAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATT 342
consensus_7355#1      AAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAAGATTAAACTTGGTCATGATT 312
consensus_7355#2      ------------------------------------------------------------
                                                                                  

consensus_7355#0      CAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAGCGGCCGCTC 393
consensus_7355#1      CAGATTCAGATCATGATGATAACAAAAAAAAAAAAAACAGAG--------- 354
consensus_7355#2      ---------------------------------------------------