cluster # 7363

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Oryza sativa
cluster # 7363 cluster # 7363 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7363#0 length = 515 sequences # 3

consensus_7363#1 length = 507 sequences # 1

consensusID : consensus_7363#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 515
fasta sequence

                              [TTGGAGAGGCGGCGGCGCGAAAAATCCGAAGCTTTCGCGG-GAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCGCGGCGAGCGGCGG-GAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGGA-CTC-GGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTCTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAAGCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGCAGGATGGAATCAGGCTTAACTAAAATGAGAAAACAAACGGGAGCATTTGTACTTCTAAGATGAGAAAGTAGTTATATCGACCTTTGGCTTTTGAATTCACTATGTACGGAGTTACCAAAAAAAAAAAACCACAACGTGTTGACGGGGCATTATGAATAACTATTGCTTGGAGATT]

[+] EMBL AK068205             [TTGGAGAGGCGGCGGCGCGAAAAATCCGAAGCTTTCGCGG GAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCGCGGCGAGCGGCGG GAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGGAGCTC GGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTCTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAAGCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGCAGGATGGAATCAGGCTTAACTAAAATGAGAAAACAAACGGGAGCATTTGTACTTCTAAGATGAGAAAGTAGTTATATCGACCTTTGGCTTTTGAATTCACTATGTACGGAGTTACCAAAAAAAAAAAACCACAACGTGTTGACGGGGCATTATGAATAACTATTGCTTGGAGATT]
[+] EMBL OSR01531A            [              GCGCGAAAAATCCGAAGCTTTCGCGG GAGGAGCTAGGGTTTGTGTGTNTGGTTGGGCGCGCGGCGAGCGGCGG GAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGGA NTC GGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTCTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAAGCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGCAGGATGGAATCAGGCTTAACTAAGATGAGAAAACAAACGGGAGCATTTGTACTTCTAAGATGAGAAAGTAGTTATATCGACCTTTNGCTTTTGAATTCACTATGT                                                                      ]
[+] EMBL OSC915               [                   anAAATCCGAAGCTTTCGCGGNGAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCGCGGC AGC GCGGNGAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTNGAACGCGGA CTCTGGGGCGTACACGTACCCGTGCCCCTNCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTCTACAACGAGGAGGAC                                                                                                                                                                                                                                                ]




>consensus_7363#0
TTGGAGAGGCGGCGGCGCGAAAAATCCGAAGCTTTCGCGGGAGGAGCTAGGGTTTGTGTG
TGTGGTTGGGCGCGCGGCGAGCGGCGGGAGATGTCGGCGTACGACGAGGTGGAGATCGAG
GACATGGAGTGGAACGCGGACTCGGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGT
TCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGCT
CCCTCTTCCTCACCGTCGTCTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGC
ACAAGCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGCAGGATGGAATCAGGCTTAAC
TAAAATGAGAAAACAAACGGGAGCATTTGTACTTCTAAGATGAGAAAGTAGTTATATCGA
CCTTTGGCTTTTGAATTCACTATGTACGGAGTTACCAAAAAAAAAAAACCACAACGTGTT
GACGGGGCATTATGAATAACTATTGCTTGGAGATT

consensusID : consensus_7363#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [AAAAATCCGAAGCTTTCGCGGGAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCNCGGCGAACGGCGGGAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGGAGCTCGGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCNCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTNTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAANCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGGTGAGTTTTTTTTTTTTTTGGCGCAATTGGAATCCGTTTCCGGTGAAGCGTGCTCGTTTGTTAGGTTATAAGTTTGAATCGTTGCTGTGTAATTTGGAGTATTAATTAATCGATCTCCTGTATACCTGATTATGGATTCAATAAATAGTTCTGAAATTTTAGCTTTTGGATGAAAAAAAAAAAAAA]

[+] EMBL AU163854             [AAAAATCCGAAGCTTTCGCGGGAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCNCGGCGAACGGCGGGAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGGAGCTCGGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCNCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCGTNTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAANCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGGTGAGTTTTTTTTTTTTTTGGCGCAATTGGAATCCGTTTCCGGTGAAGCGTGCTCGTTTGTTAGGTTATAAGTTTGAATCGTTGCTGTGTAATTTGGAGTATTAATTAATCGATCTCCTGTATACCTGATTATGGATTCAATAAATAGTTCTGAAATTTTAGCTTTTGGATGAAAAAAAAAAAAAA]




>consensus_7363#1
AAAAATCCGAAGCTTTCGCGGGAGGAGCTAGGGTTTGTGTGTGTGGTTGGGCGCNCGGCG
AACGGCGGGAGATGTCGGCGTACGACGAGGTGGAGATCGAGGACATGGAGTGGAACGCGG
AGCTCGGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTGTTCCAGATCACGCTCGCCG
ACCTCCGCCTCGGGGAGGAGATCGCNCGGTGCCCCTCCTGCTCCCTCTTCCTCACCGTCG
TNTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCGCACAANCCGGCCCCGCGCC
CCGTCGCCGTCGCCTGAGGCGGTGAGTTTTTTTTTTTTTTGGCGCAATTGGAATCCGTTT
CCGGTGAAGCGTGCTCGTTTGTTAGGTTATAAGTTTGAATCGTTGCTGTGTAATTTGGAG
TATTAATTAATCGATCTCCTGTATACCTGATTATGGATTCAATAAATAGTTCTGAAATTT
TAGCTTTTGGATGAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7363#0      TTGGAGAGGCGGCGGCGCGAAAAATCCGAAGCTTTCGCGGGAGGAGCTAGGGTTTGTGTG 60
consensus_7363#1      -------------------AAAAATCCGAAGCTTTCGCGGGAGGAGCTAGGGTTTGTGTG 41
                                         *****************************************

consensus_7363#0      TGTGGTTGGGCGCGCGGCGAGCGGCGGGAGATGTCGGCGTACGACGAGGTGGAGATCGAG 120
consensus_7363#1      TGTGGTTGGGCGCNCGGCGAACGGCGGGAGATGTCGGCGTACGACGAGGTGGAGATCGAG 101
                      ************* ****** ***************************************

consensus_7363#0      GACATGGAGTGGAACGCGGA-CTCGGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTG 179
consensus_7363#1      GACATGGAGTGGAACGCGGAGCTCGGGGCGTACACGTACCCGTGCCCCTGCGGCGACCTG 161
                      ******************** ***************************************

consensus_7363#0      TTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCGCGGTGCCCCTCCTGC 239
consensus_7363#1      TTCCAGATCACGCTCGCCGACCTCCGCCTCGGGGAGGAGATCGCNCGGTGCCCCTCCTGC 221
                      ******************************************** ***************

consensus_7363#0      TCCCTCTTCCTCACCGTCGTCTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCG 299
consensus_7363#1      TCCCTCTTCCTCACCGTCGTNTACAACGAGGAGGACTTCGCCGACGCCAAGGAGCCCCCG 281
                      ******************** ***************************************

consensus_7363#0      CACAAGCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGCAGGATGGAATCAGGCTTAA 359
consensus_7363#1      CACAANCCGGCCCCGCGCCCCGTCGCCGTCGCCTGAGGCGGTGAGTTTTTTTTTTTTTTG 341
                      ***** **********************************  *  *    *     **  

consensus_7363#0      CTAAAATGAGAAAACAAACGGGAGCATTTGTACTTCTAAGATGAGAAAGTAGTT-ATATC 418
consensus_7363#1      GCGCAATTGGAATCCGTTTCCGGTGAAGCGTGCTCGTTTGTTAGGTTATAAGTTTGAATC 401
                          ***  ***  *      *   *   ** **  *  * *  *  *  ****   ***

consensus_7363#0      GAC-CTTTGGCTTTTGAATTCACTATGTACGGAGTTACCAAAAAAAAAAAACCACAACGT 477
consensus_7363#1      GTTGCTGTGTAATTTGGAGTATTAATTAATCGATCTCCTGTATACCTGATTATGGATTCA 461
                      *   ** **   **** * *    **  *  **  * *   * *    *      *    

consensus_7363#0      GTTGACGGGGCATTATGAATAACTATTGCTTGGAGATT-------- 515
consensus_7363#1      ATAAATAGTTCTGAAATTTTAGCTTTTGGATGAAAAAAAAAAAAAA 507
                       *  *  *  *   *    ** ** ***  ** * *