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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1762 fasta sequence
[CTGCGAAGGACGCCGCCTCCCATTCCGTGGTACTCTGGAAAGTCGAGGCGCGACGCCGGCGACGTGAGCGCCATTGGAGGTCGGCGGCGAGTTCTTCACCGGCAGATTCTGCTCGCGACTCCTTCCTTGCACTGCGATCTCAATTCTTGCTTACTTGCGCTGTTGATTCATATGGCTTCTTTTGGTCTTCTGCTCTTGTGCAGTTTCCACGCGCACCACCTGTTCGACGAAACGCCACTGCGTGATCGGCCGCCATGGAGGGTCGTCCTGGGAGGCGCAGGCGCAGGAGGGTCAAGGCCCCGACGCGCGCTGCCGGCATGGACTGGATCAGCGGCCTCCCCGACGAAATCCTCCACCACATCATGTCCTTCCTGAACGCGCGCCAGGCCGTGCAGACGTGCGTGCTGTCCCGGCGGTGGAGCGATCTCTGGCGCACCGTGCCCTGCATCAACGCCGACTTCAATGAGTTTGATTTCATTGATTACCAAGGGGACGATGAGGACTACAACGACGAGGTGGCGTTCAAGAGGTTCGTTAACCGGATGTTGGAGCTCCGCGATCCTGCCACCATGATGGACAAATTCTGGCTCAAGTACAAAATATCAGACGGGTACAATGAATACAAGGATTCCAATGTAGATGCCAACAGGTGGATTAGCCATGCTTTGCAAAAGCAGGCCAGGGTTATGGAGGTTGTCGTGTTCTCCTTTCCATTGGAGCTCGATCACTCGGTGTTCACTTCATGCTACCTGAGAAAAATTGGGTTCTCCTGTGTTTCTTTACACCAAGGTTTCTTCAAGCAACTTGACGCCGGCTGTCCAGAATTGGAAGAACTCTTCTTACATGATTGCACTATTGCGGATGAGGAGATCTTCTCCCAGTCACTGAAGGTTTTGACAATCGACGACACTGAATTCTCCAAGGCGAACAAGGCATATATTTCTATTCCAAGTGTTACTTCTCTCACCTTGTCTAGTCCTGAGAATTCCACACCTATGCTAAAGGACATGGCATTACTAACGACCACATCAGTATCAGTTAAATTTTATACATTCAGTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTGAATTATGAGGGTACAGAGCTGACGTTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCAATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCAGCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGGATCGTTAGCGAGCTTATGGAAAGATCATTTACATGCGAGCACCTTAAGATTGTTGAAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGCAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTCATATCAAACACTGGGGCCAATACGAGGAAGAGGATGAGTTACCTGCATTTGTTCGGTATGAGGAGAGATGAAATGCCAAAGGATCTTTTGCATTTGTTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGCTACAGTAGAGTTCCGAGGTCTTATTTTGCATTTTTGCTGGTCTGTAGTAATGGCATCCAATAACTTTGCTAGTTTTCATTCCACTCCTAATCTCTGATTACATTAGCAGTTGTTCAACCAAGGACCTATTTATCCCTTGTACAACAGAATTT-CTTTCCATTCATCAACTAATTTTT]
[+] EMBL AK102940 [CTGCGAAGGACGCCGCCTCCCATTCCGTGGTACTCTGGAAAGTCGAGGCGCGACGCCGGCGACGTGAGCGCCATTGGAGGTCGGCGGCGAGTTCTTCACCGGCAGATTCTGCTCGCGACTCCTTCCTTGCACTGCGATCTCAATTCTTGCTTACTTGCGCTGTTGATTCATATGGCTTCTTTTGGTCTTCTGCTCTTGTGCAGTTTCCACGCGCACCACCTGTTCGACGAAACGCCACTGCGTGATCGGCCGCCATGGAGGGTCGTCCTGGGAGGCGCAGGCGCAGGAGGGTCAAGGCCCCGACGCGCGCTGCCGGCATGGACTGGATCAGCGGCCTCCCCGACGAAATCCTCCACCACATCATGTCCTTCCTGAACGCGCGCCAGGCCGTGCAGACGTGCGTGCTGTCCCGGCGGTGGAGCGATCTCTGGCGCACCGTGCCCTGCATCAACGCCGACTTCAATGAGTTTGATTTCATTGATTACCAAGGGGACGATGAGGACTACAACGACGAGGTGGCGTTCAAGAGGTTCGTTAACCGGATGTTGGAGCTCCGCGATCCTGCCACCATGATGGACAAATTCTGGCTCAAGTACAAAATATCAGACGGGTACAATGAATACAAGGATTCCAATGTAGATGCCAACAGGTGGATTAGCCATGCTTTGCAAAAGCAGGCCAGGGTTATGGAGGTTGTCGTGTTCTCCTTTCCATTGGAGCTCGATCACTCGGTGTTCACTTCATGCTACCTGAGAAAAATTGGGTTCTCCTGTGTTTCTTTACACCAAGGTTTCTTCAAGCAACTTGACGCCGGCTGTCCAGAATTGGAAGAACTCTTCTTACATGATTGCACTATTGCGGATGAGGAGATCTTCTCCCAGTCACTGAAGGTTTTGACAATCGACGACACTGAATTCTCCAAGGCGAACAAGGCATATATTTCTATTCCAAGTGTTACTTCTCTCACCTTGTCTAGTCCTGAGAATTCCACACCTATGCTAAAGGACATGGCATTACTAACGACCACATCAGTATCAGTTAAATTTTATACATTCAGTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTGAATTATGAGGGTACAGAGCTGACGTTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCAATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCAGCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGGATCGTTAGCGAGCTTATGGAAAGATCATTTACATGCGAGCACCTTAAGATTGTTGAAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGCAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTCATATCAAACACTGGGGCCAATACGAGGAAGAGGATGAGTTACCTGCATTTGTTCGGTATGAGGAGAGATGAAATGCCAAAGGATCTTTTGCATTTGTTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGCTACAGTAGAGTTCCGAGGTCTTATTTTGCATTTTTGCTGGTCTGTAGTAATGGCATCCAATAACTTTGCTAGTTTTCATTCCACTCCTAATCTCTGATTACATTAGCAGTTGTTCAACCAAGGACCTATTTATCCCTTGTACAACAGAATTT CTTTCCATTCATCAACTA ]
[+] EMBL CF324594 [ GATCACTCGGTGTTCACTTCATGCTACCTGAGAAAAATTGGGTTCTCCTGTGTTTCTTTACACCAAGGTTTCTTCAAGCAACTTGACGCCGGCTGTCCAGAATTGGAAGAACTCTTCTTACATGATTGCACTATTGCGGATGAGGAGATCTTCTCCCAGTCACTGAAGGTTTTGACAATCGACGACACTGAATTCTCCAAGGCGAACAAGGCATATATTTCTATTCCAAGTGTTACTTCTCTCACCTTGTCTAGTCCTGAGAATTCCACACCTATGCTAAAGGACATGGCATTACTAACGACCACATCAGTATCAGTTAAATTTTATACATTCAGTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTGAATTATGAGGGTACAGAGCTGACGTTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCAATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGA ]
[+] EMBL D43367 [ TCAGTGTGCAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTCATATCAAACACTGGGGCCAATACGAGGAAGAGGATGAGTTACCTGCATTTGTTCGGTATGAGGAGAGATGAAATGCCAAAGGATCTTTTGCATTTGTTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGCTACAGTAGAGTTCCGAGGTCTTATTTTGCATTTTTGCTGGTCTGTAGTAATGGCATCCAATAACTTTGCTAGTTTTCATTCCACTCCTAATCTCTGGTTACATTAGCAGTTGTTCAACCAAGGACCTATTTATCCCTTGTACAACAGGATTTCCTTTCCATTCATCAACCTATTTTT]
consensusID : consensus_7366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence
[GTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTCAATTATGAGGGTACAGAGCTGACATTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCGATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCACCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGTGCATTGCAGATAAATCTCCAAGAATTGTTGGCGAGCTTATGGAAAGATCATTTACGTGTGAGCACCTTAAGATTGTTGAAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGGAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTGATATCAAACACTGGGGCCAATACAAGGACGAGTTACCTGCATTTATTCGGTATGAGGAGAGATGAAATGCCAAAGGATCATGCATTTGTTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGTTACAGTAGAGTTTTAAGGTCTCCTGCATTTTTGCTGGTCTCTAGGAATGGCATCCAATAACTTGCTAGTTTTCAACTGAACAAATCGAGTAATGTGTCATTCTACTCCTAATCTCTGGTTACATTAGCAGTTGTTCAACCAAGAACCTATTTATCCCTTGTACAACAGAATTTCTTTCCATTCATCAACTATTTTTGTCGAGTCTCTTCAG]
[+] EMBL AK063758 [GTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTCAATTATGAGGGTACAGAGCTGACATTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCGATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCACCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGTGCATTGCAGATAAATCTCCAAGAATTGTTGGCGAGCTTATGGAAAGATCATTTACGTGTGAGCACCTTAAGATTGTTGAAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGGAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTGATATCAAACACTGGGGCCAATACAAGGACGAGTTACCTGCATTTATTCGGTATGAGGAGAGATGAAATGCCAAAGGATCATGCATTTGTTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGTTACAGTAGAGTTTTAAGGTCTCCTGCATTTTTGCTGGTCTCTAGGAATGGCATCCAATAACTTGCTAGTTTTCAACTGAACAAATCGAGTAATGTGTCATTCTACTCCTAATCTCTGGTTACATTAGCAGTTGTTCAACCAAGAACCTATTTATCCCTTGTACAACAGAATTTCTTTCCATTCATCAACTATTTTTGTCGAGTCTCTTCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7366#0 CTGCGAAGGACGCCGCCTCCCATTCCGTGGTACTCTGGAAAGTCGAGGCGCGACGCCGGC 60
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 GACGTGAGCGCCATTGGAGGTCGGCGGCGAGTTCTTCACCGGCAGATTCTGCTCGCGACT 120
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 CCTTCCTTGCACTGCGATCTCAATTCTTGCTTACTTGCGCTGTTGATTCATATGGCTTCT 180
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 TTTGGTCTTCTGCTCTTGTGCAGTTTCCACGCGCACCACCTGTTCGACGAAACGCCACTG 240
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 CGTGATCGGCCGCCATGGAGGGTCGTCCTGGGAGGCGCAGGCGCAGGAGGGTCAAGGCCC 300
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 CGACGCGCGCTGCCGGCATGGACTGGATCAGCGGCCTCCCCGACGAAATCCTCCACCACA 360
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 TCATGTCCTTCCTGAACGCGCGCCAGGCCGTGCAGACGTGCGTGCTGTCCCGGCGGTGGA 420
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 GCGATCTCTGGCGCACCGTGCCCTGCATCAACGCCGACTTCAATGAGTTTGATTTCATTG 480
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 ATTACCAAGGGGACGATGAGGACTACAACGACGAGGTGGCGTTCAAGAGGTTCGTTAACC 540
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 GGATGTTGGAGCTCCGCGATCCTGCCACCATGATGGACAAATTCTGGCTCAAGTACAAAA 600
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 TATCAGACGGGTACAATGAATACAAGGATTCCAATGTAGATGCCAACAGGTGGATTAGCC 660
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 ATGCTTTGCAAAAGCAGGCCAGGGTTATGGAGGTTGTCGTGTTCTCCTTTCCATTGGAGC 720
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 TCGATCACTCGGTGTTCACTTCATGCTACCTGAGAAAAATTGGGTTCTCCTGTGTTTCTT 780
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 TACACCAAGGTTTCTTCAAGCAACTTGACGCCGGCTGTCCAGAATTGGAAGAACTCTTCT 840
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 TACATGATTGCACTATTGCGGATGAGGAGATCTTCTCCCAGTCACTGAAGGTTTTGACAA 900
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 TCGACGACACTGAATTCTCCAAGGCGAACAAGGCATATATTTCTATTCCAAGTGTTACTT 960
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 CTCTCACCTTGTCTAGTCCTGAGAATTCCACACCTATGCTAAAGGACATGGCATTACTAA 1020
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 CGACCACATCAGTATCAGTTAAATTTTATACATTCAGTTATGGTTTTGATGCTAATGATC 1080
consensus_7366#1 ------------------------------------GTTATGGTTTTGATGCTAATGATC 24
************************
consensus_7366#0 TCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTGAATTATGAGGGTA 1140
consensus_7366#1 TCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTCAATTATGAGGGTA 84
********************************************** *************
consensus_7366#0 CAGAGCTGACGTTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCAATGTTGTCAACC 1200
consensus_7366#1 CAGAGCTGACATTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCGATGTTGTCAACC 144
********** ************************************ ************
consensus_7366#0 TGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGA 1260
consensus_7366#1 TGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGA 204
************************************************************
consensus_7366#0 ACTCAGCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAG------------------- 1301
consensus_7366#1 ACTCACCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGTGCATTGCAGATAAATCTC 264
***** ***********************************
consensus_7366#0 ----GATCGTTAGCGAGCTTATGGAAAGATCATTTACATGCGAGCACCTTAAGATTGTTG 1357
consensus_7366#1 CAAGAATTGTTGGCGAGCTTATGGAAAGATCATTTACGTGTGAGCACCTTAAGATTGTTG 324
** *** ************************* ** *******************
consensus_7366#0 AAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGCAAGATTTCTTTGCTAGTA 1417
consensus_7366#1 AAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGGAAGATTTCTTTGCTAGTA 384
***************************************** ******************
consensus_7366#0 ATGGCATGGCCTCTGTTCAGTTTCATATCAAACACTGGGGCCAATACGAGGAAGAGGATG 1477
consensus_7366#1 ATGGCATGGCCTCTGTTCAGTTTGATATCAAACACTGGGGCCAATACAA------GGACG 438
*********************** *********************** * *** *
consensus_7366#0 AGTTACCTGCATTTGTTCGGTATGAGGAGAGATGAAATGCCAAAGGATCTTTTGCATTTG 1537
consensus_7366#1 AGTTACCTGCATTTATTCGGTATGAGGAGAGATGAAATGCCAAAGGATCAT--GCATTTG 496
************** ********************************** * *******
consensus_7366#0 TTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGCTACAGTAGAGT 1597
consensus_7366#1 TTTGTCATCCCATTGAAGAATCAACTCGCTTTCTGCTACATTCACTGGTTACAGTAGAGT 556
************************************************ ***********
consensus_7366#0 TCCGAGGTCTTATTTTGCATTTTTGCTGGTCTGTAGTAATGGCATCCAATAACTTTGCTA 1657
consensus_7366#1 TTTAAGGTC---TCCTGCATTTTTGCTGGTCTCTAGGAATGGCATCCAATAACTT-GCTA 612
* ***** * ***************** *** ****************** ****
consensus_7366#0 GTTTTCA-------------------------TTCCACTCCTAATCTCTGATTACATTAG 1692
consensus_7366#1 GTTTTCAACTGAACAAATCGAGTAATGTGTCATTCTACTCCTAATCTCTGGTTACATTAG 672
******* *** ************** *********
consensus_7366#0 CAGTTGTTCAACCAAGGACCTATTTATCCCTTGTACAACAGAATTTCTTTCCATTCATCA 1752
consensus_7366#1 CAGTTGTTCAACCAAGAACCTATTTATCCCTTGTACAACAGAATTTCTTTCCATTCATCA 732
**************** *******************************************
consensus_7366#0 ACTAATTTTT-------------- 1762
consensus_7366#1 ACTATTTTTGTCGAGTCTCTTCAG 756
**** ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||