cluster # 737

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Oryza sativa
cluster # 737 cluster # 737 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_737#0 length = 996 sequences # 1

consensus_737#1 length = 461 sequences # 1

consensusID : consensus_737#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 996
fasta sequence

                              [CCAACGTCCACCAAACAAGCGGGCAAAAGATGGCAGCTCTTCAGCAGCTGATCAAAATGAGCAATCCAATGATACCGTGTCTGGTCTGTCAGGTATTAAGAGAGATCAGGAAGCTATATATGGAATGTCTGAGCAACTATCTGGTTTAAGTGAAGGAGATGATATGGATGATGGTGAATCAAGGCCACATGAAGCAGATGACAAAGAGAGCGACAGCAAGAAAAGGAATATACAAATTTCTTCACAGAGGACTTCAGCGGAAGCTAAGATTATTGTGCAAACAACCAGTGAGGTTGATCTTTTGGATGATGGTTATAGATGGCGCAAGTATGGGCAGAAGGTGGTTAAAGGAAACCCTCATCCAAGGAGTTACTACAAGTGCACCTATGCTGGATGTAATGTTAGGAAACACATTGAGAGGGCTTCGTCAGACCCTAAGGCTGTCATAACAACTTATGAAGGAAAACATAACCATGAACCACCGGTTGGTAGGGGAAACAACCAGAATGCGGGAAATGCGGCCCCTTCAAGCAGTGCACAACAGAATATGCAGAATTTGTCTAGTAATCAAGCTTCACTTACAATGGCAGACTTCAACAACATTAACCAGAGGCCAATTGGTGTCTTACAGTTCAAAAGCGAAGAATAACACCGTCAACTGACTTTCTTGTGACCCCGGTTGCTGAAGTGGCACACTGGTATTTGGTTGATTTCTTCAGGCAAATATTGGATGCCTTGCATTCTAATAGTCACACTGTTCCAAACGTTCAAGAATAATACAACAATATCATTGTCTGCAATTNTTCTACCGGTACACAGAATTACTGTAACGACACCTAACCCTTCTAGCTTGTACATGCTGGTACTTTGAGCATAAACTCAATATAACAACACCTATGTGGATGTGCAAATAGACCGTCGTAAACATATCATGTTTACTTTGGAATATGGTAATAAACAAGCTCCTTGCTTTGTATTAGAATGGATATAAAAATG]

[+] EMBL BE040192             [CCAACGTCCACCAAACAAGCGGGCAAAAGATGGCAGCTCTTCAGCAGCTGATCAAAATGAGCAATCCAATGATACCGTGTCTGGTCTGTCAGGTATTAAGAGAGATCAGGAAGCTATATATGGAATGTCTGAGCAACTATCTGGTTTAAGTGAAGGAGATGATATGGATGATGGTGAATCAAGGCCACATGAAGCAGATGACAAAGAGAGCGACAGCAAGAAAAGGAATATACAAATTTCTTCACAGAGGACTTCAGCGGAAGCTAAGATTATTGTGCAAACAACCAGTGAGGTTGATCTTTTGGATGATGGTTATAGATGGCGCAAGTATGGGCAGAAGGTGGTTAAAGGAAACCCTCATCCAAGGAGTTACTACAAGTGCACCTATGCTGGATGTAATGTTAGGAAACACATTGAGAGGGCTTCGTCAGACCCTAAGGCTGTCATAACAACTTATGAAGGAAAACATAACCATGAACCACCGGTTGGTAGGGGAAACAACCAGAATGCGGGAAATGCGGCCCCTTCAAGCAGTGCACAACAGAATATGCAGAATTTGTCTAGTAATCAAGCTTCACTTACAATGGCAGACTTCAACAACATTAACCAGAGGCCAATTGGTGTCTTACAGTTCAAAAGCGAAGAATAACACCGTCAACTGACTTTCTTGTGACCCCGGTTGCTGAAGTGGCACACTGGTATTTGGTTGATTTCTTCAGGCAAATATTGGATGCCTTGCATTCTAATAGTCACACTGTTCCAAACGTTCAAGAATAATACAACAATATCATTGTCTGCAATTNTTCTACCGGTACACAGAATTACTGTAACGACACCTAACCCTTCTAGCTTGTACATGCTGGTACTTTGAGCATAAACTCAATATAACAACACCTATGTGGATGTGCAAATAGACCGTCGTAAACATATCATGTTTACTTTGGAATATGGTAATAAACAAGCTCCTTGCTTTGTATTAGAATGGATATAAAAATG]




>consensus_737#0
CCAACGTCCACCAAACAAGCGGGCAAAAGATGGCAGCTCTTCAGCAGCTGATCAAAATGA
GCAATCCAATGATACCGTGTCTGGTCTGTCAGGTATTAAGAGAGATCAGGAAGCTATATA
TGGAATGTCTGAGCAACTATCTGGTTTAAGTGAAGGAGATGATATGGATGATGGTGAATC
AAGGCCACATGAAGCAGATGACAAAGAGAGCGACAGCAAGAAAAGGAATATACAAATTTC
TTCACAGAGGACTTCAGCGGAAGCTAAGATTATTGTGCAAACAACCAGTGAGGTTGATCT
TTTGGATGATGGTTATAGATGGCGCAAGTATGGGCAGAAGGTGGTTAAAGGAAACCCTCA
TCCAAGGAGTTACTACAAGTGCACCTATGCTGGATGTAATGTTAGGAAACACATTGAGAG
GGCTTCGTCAGACCCTAAGGCTGTCATAACAACTTATGAAGGAAAACATAACCATGAACC
ACCGGTTGGTAGGGGAAACAACCAGAATGCGGGAAATGCGGCCCCTTCAAGCAGTGCACA
ACAGAATATGCAGAATTTGTCTAGTAATCAAGCTTCACTTACAATGGCAGACTTCAACAA
CATTAACCAGAGGCCAATTGGTGTCTTACAGTTCAAAAGCGAAGAATAACACCGTCAACT
GACTTTCTTGTGACCCCGGTTGCTGAAGTGGCACACTGGTATTTGGTTGATTTCTTCAGG
CAAATATTGGATGCCTTGCATTCTAATAGTCACACTGTTCCAAACGTTCAAGAATAATAC
AACAATATCATTGTCTGCAATTNTTCTACCGGTACACAGAATTACTGTAACGACACCTAA
CCCTTCTAGCTTGTACATGCTGGTACTTTGAGCATAAACTCAATATAACAACACCTATGT
GGATGTGCAAATAGACCGTCGTAAACATATCATGTTTACTTTGGAATATGGTAATAAACA
AGCTCCTTGCTTTGTATTAGAATGGATATAAAAATG

consensusID : consensus_737#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [TCAACTGACTTTCTTGGGACCCCGGTTGTCTGAAGTGCACACCTGGTATTTGTTGATTTCTTCAGCAAATATTGGATGCCTGCAATTCTAATAGTCACACTGTTCCAACGTTCAAGAAGTAATACAACAATATCATTGTCTCAATTTTCCTACCGATACACAGAATTACTGAAACGACACCTAGCCTTTCTAGCTTGTACATGCTGTTACTTTGAAGCATAAACTCAATATAACACCAGCTAGGTGGATGTCAGATGGACGGGTCGTAATCATATACATGTTTACTTTGTAATTTGTTTATCAATCAAGCTCCTGCTTGTAATAAGATTGAATAGAGAAGTGAAATGTACAGATGCTTTCCCGTATTTCTGTATATGTTGTAATTTGTAGAATAGTAAATCAACAAAGAAGGTATACTGTGGACATATATTAAGATTCTTTCTCAACTTTAATCCCAAAAA]

[+] EMBL BI813534             [TCAACTGACTTTCTTGGGACCCCGGTTGTCTGAAGTGCACACCTGGTATTTGTTGATTTCTTCAGCAAATATTGGATGCCTGCAATTCTAATAGTCACACTGTTCCAACGTTCAAGAAGTAATACAACAATATCATTGTCTCAATTTTCCTACCGATACACAGAATTACTGAAACGACACCTAGCCTTTCTAGCTTGTACATGCTGTTACTTTGAAGCATAAACTCAATATAACACCAGCTAGGTGGATGTCAGATGGACGGGTCGTAATCATATACATGTTTACTTTGTAATTTGTTTATCAATCAAGCTCCTGCTTGTAATAAGATTGAATAGAGAAGTGAAATGTACAGATGCTTTCCCGTATTTCTGTATATGTTGTAATTTGTAGAATAGTAAATCAACAAAGAAGGTATACTGTGGACATATATTAAGATTCTTTCTCAACTTTAATCCCAAAAA]




>consensus_737#1
TCAACTGACTTTCTTGGGACCCCGGTTGTCTGAAGTGCACACCTGGTATTTGTTGATTTC
TTCAGCAAATATTGGATGCCTGCAATTCTAATAGTCACACTGTTCCAACGTTCAAGAAGT
AATACAACAATATCATTGTCTCAATTTTCCTACCGATACACAGAATTACTGAAACGACAC
CTAGCCTTTCTAGCTTGTACATGCTGTTACTTTGAAGCATAAACTCAATATAACACCAGC
TAGGTGGATGTCAGATGGACGGGTCGTAATCATATACATGTTTACTTTGTAATTTGTTTA
TCAATCAAGCTCCTGCTTGTAATAAGATTGAATAGAGAAGTGAAATGTACAGATGCTTTC
CCGTATTTCTGTATATGTTGTAATTTGTAGAATAGTAAATCAACAAAGAAGGTATACTGT
GGACATATATTAAGATTCTTTCTCAACTTTAATCCCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_737#0      CCAACGTCCACCAAACAAGCGGGCAAAAGATGGCAGCTCTTCAGCAGCTGATCAAAATGA 60
consensus_737#1      ------------------------------------------------------------
                                                                                 

consensus_737#0      GCAATCCAATGATACCGTGTCTGGTCTGTCAGGTATTAAGAGAGATCAGGAAGCTATATA 120
consensus_737#1      ------------------------------------------------------------
                                                                                 

consensus_737#0      TGGAATGTCTGAGCAACTATCTGGTTTAAGTGAAGGAGATGATATGGATGATGGTGAATC 180
consensus_737#1      ------------------------------------------------------------
                                                                                 

consensus_737#0      AAGGCCACATGAAGCAGATGACAAAGAGAGCGACAGCAAGAAAAGGAATATACAAATTTC 240
consensus_737#1      ------------------------------------------------------------
                                                                                 

consensus_737#0      TTCACAGAGGACTTCAGCGGAAGCTAAGATTATTGTGCAAACAACCAGTGAGGTTGATCT 300
consensus_737#1      ------------------------------------------------------------
                                                                                 

consensus_737#0      TTTGGATGATGGTTATAGATGGCGCAAGTATGGGCAGAAGGTGGTTAAAGGAAACCCTCA 360
consensus_737#1      ------------------------------------------------------------
                                                                                 

consensus_737#0      TCCAAGGAGTTACTACAAGTGCACCTATGCTGGATGTAATGTTAGGAAACACATTGAGAG 420
consensus_737#1      ------------------------------------------------------------
                                                                                 

consensus_737#0      GGCTTCGTCAGACCCTAAGGCTGTCATAACAACTTATGAAGGAAAACATAACCATGAACC 480
consensus_737#1      ------------------------------------------------------------
                                                                                 

consensus_737#0      ACCGGTTGGTAGGGGAAACAACCAGAATGCGGGAAATGCGGCCCCTTCAAGCAGTGCACA 540
consensus_737#1      ------------------------------------------------------------
                                                                                 

consensus_737#0      ACAGAATATGCAGAATTTGTCTAGTAATCAAGCTTCACTTACAATGGCAGACTTCAACAA 600
consensus_737#1      ------------------------------------------------------------
                                                                                 

consensus_737#0      CATTAACCAGAGGCCAATTGGTGTCTTACAGTTCAAAAGCGAAGAATAACACCGTCAACT 660
consensus_737#1      ------------------------------------------------------TCAACT 6
                                                                           ******

consensus_737#0      GACTTTCTTGTGACCCCGGTTG-CTGAAGTGGCACAC-TGGTATTTGGTTGATTTCTTCA 718
consensus_737#1      GACTTTCTTGGGACCCCGGTTGTCTGAAGTG-CACACCTGGTATTTG-TTGATTTCTTCA 64
                     ********** *********** ******** ***** ********* ************

consensus_737#0      GGCAAATATTGGATGCCTTGCATTCTAATAGTCACACTGTTCCAAACGTTCAAGAA-TAA 777
consensus_737#1      G-CAAATATTGGATGCCTGCAATTCTAATAGTCACACTGTTCCAA-CGTTCAAGAAGTAA 122
                     * ****************   ************************ ********** ***

consensus_737#0      TACAACAATATCATTGTCTGCAATTNTTCTACCGGTACACAGAATTACTGTAACGACACC 837
consensus_737#1      TACAACAATATCATTGTCT-CAATTTTCCTACCGATACACAGAATTACTGAAACGACACC 181
                     ******************* ***** * ****** *************** *********

consensus_737#0      TAACCCTTCTAGCTTGTACATGCTGGTACTTTGA-GCATAAACTCAATATAACAACACCT 896
consensus_737#1      TAGCCTTTCTAGCTTGTACATGCTGTTACTTTGAAGCATAAACTCAATATAACACCAGCT 241
                     ** ** ******************* ******** ******************* ** **

consensus_737#0      ATGTGGATGTGCAAATAGACCG-TCGTAAACATAT-CATGTTTACTTTGGAATATGGTAA 954
consensus_737#1      AGGTGGATGT-CAGATGGACGGGTCGTAATCATATACATGTTTACTTTGTAATTTGTTTA 300
                     * ******** ** ** *** * ****** ***** ************* *** ** * *

consensus_737#0      TAAACAAGCTCCTTGCTTTGTATTAGAATGGATATAAAAATG------------------ 996
consensus_737#1      TCAATCAAGCTCCTGCTTGTAATAAGATTGAATAGAGAAGTGAAATGTACAGATGCTTTC 360
                     * **  *    * *****   ** *** ** *** * ** **                  

consensus_737#0      ------------------------------------------------------------
consensus_737#1      CCGTATTTCTGTATATGTTGTAATTTGTAGAATAGTAAATCAACAAAGAAGGTATACTGT 420
                                                                                 

consensus_737#0      -----------------------------------------
consensus_737#1      GGACATATATTAAGATTCTTTCTCAACTTTAATCCCAAAAA 461