cluster # 7397

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Oryza sativa
cluster # 7397 cluster # 7397 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7397#0 length = 609 sequences # 1

consensus_7397#1 length = 593 sequences # 2
consensus_7397#2 length = 425 sequences # 1

consensusID : consensus_7397#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [AATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGATGTTGGGAGGAGGAGGAGGAAGGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAAGTAAGTAACAAGTCCTACTCATCTAATTAGAAGTAACTTTGGATCCATCATTTCTATTCCCTCCATTTCATCTGTTTACTTTCTGCTATGATGCTACCATCTATTTCTACTGCCATCTTAGTTGACAGTAGTAGAAACGTAAAGAGA]

[+] EMBL AK062961             [AATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGATGTTGGGAGGAGGAGGAGGAAGGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAAGTAAGTAACAAGTCCTACTCATCTAATTAGAAGTAACTTTGGATCCATCATTTCTATTCCCTCCATTTCATCTGTTTACTTTCTGCTATGATGCTACCATCTATTTCTACTGCCATCTTAGTTGACAGTAGTAGAAACGTAAAGAGA]




>consensus_7397#0
AATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATC
CAGCCCCGCGTCGCACGGATTCGTGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGA
GACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGC
TGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGC
GGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGAC
GGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGG
GAGTAATGATGTTGGGAGGAGGAGGAGGAAGGTCCGGTCCTGGAGTCGGGGGAGCTTCCT
GGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAAGTAAGTAACAAGTCCTAC
TCATCTAATTAGAAGTAACTTTGGATCCATCATTTCTATTCCCTCCATTTCATCTGTTTA
CTTTCTGCTATGATGCTACCATCTATTTCTACTGCCATCTTAGTTGACAGTAGTAGAAAC
GTAAAGAGA

consensusID : consensus_7397#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 593
fasta sequence

                              [TCTGCTTCCTACACAACCCCCTTCAGGACTCTCTCCCCGTCAGTCAAAACATGGCTGCCCTGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGATGTTGGGAGGAGGAGGAAAGAAAGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAACGAGGGGTGTTTTCTTTGCTGTCAAAGAAGTGTACTTAGATGATCAAGGGAAATACGACGATGCACAACAGTGTATTTTTCAGCTTCAGCAGGAAATTGCACTCCTGAGTCGTCTGCAACACAATAACATTGTACAGT]

[+] EMBL CF323214             [TCTGCTTCCTACACAACCCCCTTCAGGACTCTCTCCCCGTCAGTCAAAACATGGCTGCCCTGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGATGTTGGGAGGAGGAGGAAAGAAAGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAACGAGGGGTGTTTTCTTTGCTGTCAAAGAAGTGTACTTAGATGATCAAGGGAAATACGACGATGCACAACAGTGTATTTTTCAGCTTCAGCAGGAAATTGCACTCCTGAGTCGTCTGCAACACAATAACATTGTACAGT]
[+] EMBL CF308552             [                                                    GGCTGCCCTGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGAT                                                                                                                                                                                                                                       ]




>consensus_7397#1
TCTGCTTCCTACACAACCCCCTTCAGGACTCTCTCCCCGTCAGTCAAAACATGGCTGCCC
TGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGC
CAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCAC
CGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGG
TGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATG
AGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATG
ATGTTGGGAGGAGGAGGAAAGAAAGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGT
GGATCCTTTGGGATGGTGTTCGAGGGGATCACCAACGAGGGGTGTTTTCTTTGCTGTCAA
AGAAGTGTACTTAGATGATCAAGGGAAATACGACGATGCACAACAGTGTATTTTTCAGCT
TCAGCAGGAAATTGCACTCCTGAGTCGTCTGCAACACAATAACATTGTACAGT

consensusID : consensus_7397#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [AATGTCAACCTATGTACGAGAGGGAACCGTTGATTCACACAATGTGGTCATCGCGCTTGGTGTGAAAAAGCCCACGTGGCTGCGAAGCCTACCGTGTGCCGGATTTAGGACTGAACGCCTCTAAAGTCAGAATCCAAGCTGAGCAAGCGGCAGCCTGCAGCCCAGCCAGCCCGCCCCGACCCACAGTTAGGGGCAGCAAGCACACACACAAGGGCCCAGTGCCACACAGGCACAAGCCAGGCCCAGGCACGACAGCGCACGCAGGCCAGGCACAGCCTCGAAGCTCCCTTCACCAACGGGCGGCAGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTAAAAAAAAAA]

[+] EMBL BI808471             [AATGTCAACCTATGTACGAGAGGGAACCGTTGATTCACACAATGTGGTCATCGCGCTTGGTGTGAAAAAGCCCACGTGGCTGCGAAGCCTACCGTGTGCCGGATTTAGGACTGAACGCCTCTAAAGTCAGAATCCAAGCTGAGCAAGCGGCAGCCTGCAGCCCAGCCAGCCCGCCCCGACCCACAGTTAGGGGCAGCAAGCACACACACAAGGGCCCAGTGCCACACAGGCACAAGCCAGGCCCAGGCACGACAGCGCACGCAGGCCAGGCACAGCCTCGAAGCTCCCTTCACCAACGGGCGGCAGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTAAAAAAAAAA]




>consensus_7397#2
AATGTCAACCTATGTACGAGAGGGAACCGTTGATTCACACAATGTGGTCATCGCGCTTGG
TGTGAAAAAGCCCACGTGGCTGCGAAGCCTACCGTGTGCCGGATTTAGGACTGAACGCCT
CTAAAGTCAGAATCCAAGCTGAGCAAGCGGCAGCCTGCAGCCCAGCCAGCCCGCCCCGAC
CCACAGTTAGGGGCAGCAAGCACACACACAAGGGCCCAGTGCCACACAGGCACAAGCCAG
GCCCAGGCACGACAGCGCACGCAGGCCAGGCACAGCCTCGAAGCTCCCTTCACCAACGGG
CGGCAGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCAG
AGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTAAAAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7397#0      AATACGCGACGGGGCATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATC 60
consensus_7397#1      --------TCTGCTTCCTACACAACCCCCTTCAGGACTCTCTCCCCG-TCAGTCAAAACA 51
consensus_7397#2      -----------------------------------AATGTCAACCTA--TGTACGAGAGG 23
                                                           *     *           * *  

consensus_7397#0      CAGCC-CCGCGTCGCACGGATTCGTGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGG 119
consensus_7397#1      TGGCTGCCCTGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGG 111
consensus_7397#2      GAACCGTTGATTCACACAATGTGGTCATCGCGCTTGGTGTGAAAAAGCCCACGTGGCTGC 83
                         *          **        *   ** *   * ***     * * * **  *  * 

consensus_7397#0      AGACCACGCCAAGCGT-GGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCT 178
consensus_7397#1      AGACCACGCCAAGCGT-GGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCT 170
consensus_7397#2      GAAGCCTACCGTGTGCCGGATTTAGGACTGAACGCCTCTAAA-GTCAGAATCCAA----- 137
                        * *   **  * *  ***  * * * *   * ** *  *    *** *** *      

consensus_7397#0      GCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAG 238
consensus_7397#1      GCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAG 230
consensus_7397#2      ---GCTGAGCAAGCGGCAGCC-TGCAGCC-CAGCCAGCCCGCCCCGACCCACAGTTAGGG 192
                         ****  *   **   *** *    ** * * * ***  *   **     **   * *

consensus_7397#0      GCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCG 298
consensus_7397#1      GCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCG 290
consensus_7397#2      GCAGCAAGCACACACACAAGGGCCCAGTGCCACACAGGC--------ACAAGCCAGGCCC 244
                      ** *                 *   *** *  ***  **         *   *   * * 

consensus_7397#0      ACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAAC 358
consensus_7397#1      ACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAAC 350
consensus_7397#2      AGGCACGACAGCGCAC---GCAGGCCAGGCACAGCCTCGAAGCTCCCTTCACCAACGGGC 301
                      * * * **     *     * *** *   *** *  ** * * **      ** ***  *

consensus_7397#0      GGGAGTAATGA----TGTTGGGAGGAGGAGGAG-GAAGGTCCGGTCCTGGAGTCGGGGGA 413
consensus_7397#1      GGGAGTAATGA----TGTTGGGAGGAGGAGGAAAGAAAGTCCGGTCCTGGAGTCGGGGGA 406
consensus_7397#2      GGCAGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGGCATTGTAAGTGGCAGA 361
                      ** **   ***    * *   ** **     *          **   ** *   **  **

consensus_7397#0      GCTTCCTGGG-ACGTGGATCCTTTGGGATGGTGTTCGAGG--GGATCACCAAGTAAGTAA 470
consensus_7397#1      GCTTCCTGGG-ACGTGGATCCTTTGGGATGGTGTTCGAGG--GGATCACCAA-CGAGGGG 462
consensus_7397#2      GTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCGCGTCGCACGGATTCGTAAAAAA 421
                      *   *** *   *   *****  ** ***   *  *   *  * *          *    

consensus_7397#0      CAAGTCCTACTCATCTAATTAGAAGTAACTTTGGATCCATCATTTCTATTCCCTCCATTT 530
consensus_7397#1      TGTTTTCTTTGCTGTCAA--AGAAGTGTACTTAGATG-ATCAAGGGAAATACGACGATGC 519
consensus_7397#2      AAAA-------------------------------------------------------- 425
                                                                                  

consensus_7397#0      -CATCTGTTTACTTTCT-GCTATGATGCTACCATCTATTTCTACTGCCATCTTAGTTGAC 588
consensus_7397#1      ACAACAGTGTATTTTTCAGCTTCAGCAGGAAATTGCACTCCTGA-GTCGTCTG---CAAC 575
consensus_7397#2      ------------------------------------------------------------
                                                                                  

consensus_7397#0      AGTAGTAGAAACGTAAAGAGA 609
consensus_7397#1      A-CAATAACATTGTACAGT-- 593
consensus_7397#2      ---------------------