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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence
[TTTTTTTTTTTGTTAACAATTGGTCATCAATTCATTGAGCCCCACTCTTAAGATGTTCCCTTAGCAGATAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATCTCCAACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTAT--GGTCGGCGGGGCCCCCCGACTGATGCGGTGAGCGTGATTCACACAAGCGGTGGAAGCGGATACCGTTGACCGTCGCGCAGGCAGCTGATCCCCCTTCAGNCCTTCTGATGGTGCACTTCACCCCAAATCCACTGGAGGAGCTCAGATGATGTATCCCTATCTAAGAATTTCTGTTTCTGTTACCATTTTCTGACTGAATGGATGAAGTAGAGGTGCTTTCTGCAACAAGGCATCTTGAATTATGCTTATGATTTGATTGTTCGATGAAAAAAAAA]
[+] EMBL CA761524 [TTTTTTTTTTTGTTAACAATTGGTCATCAATTCATTGAGCCCCACTCTTAAGATGTTCCCTTAGCAGATAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATCTCCAACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTAT GGTCGGCGGGGCCCCCCGACTGATGCGGTGAGCGTGATTCACACAAGCGGTGGAAGCGGATACCGTTGACCGTCGCGCAGG ]
[+] EMBL AU068526 [ CATGATCAGAATGCCATCTCCAACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTATTGGGTCCG GCGGCGCCGCGACTGATGCGGTGAGCGTGATTCAGACAAGCGGTGG AGCGGCTACCGTCG TCGTCGCGCAAGCAGCTGATCCCCCTTCAGNCCTTCTGATGGTGCACTTCACCCCAAATCCACTGGAGGAGCTCAGATGATGTATCCCTATCTAAGAATTTCTGTTTCTGTTACCATTTTCTGACTGAATGGATGAAGTAGAGGTGCTTTCTGCAACAAGGCATCTTGAATTATGCTTATGATTTGATTGTTCGATGAAAAAAAAA]
consensusID : consensus_7553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAAAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAAATGCAATATGGCTAACAGGGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGGGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTTACGGTTATCACTTATCACCAAAGAGCTCAAGCTGGGCCTTATCTTCCTGCAGCTGCATCCTATCACCAAGGAGCTCAGGCTGGGCCATATTGGGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTTCAGGTTATGATCAAAATGCCATCTACAAAAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATTTCCAACAATCCTGCAAACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTTAGAATGTCTACTCCAACTATCAAGGGTACCAGGCAGCTTATGGTCGCGGGGGCCCCCCGACTGATGCGGTGAGCGTGTTTCACACAAGCGGGGGAACGGGTACCGTCGTCGTCGCGCAAGGAGATTATCCCCCTTGTCTTCGGCCTGGGTCACCTAAACAGGCTTAT]
[+] EMBL CA761182 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAAAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAAATGCAATATGGCTAACAGGGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGGGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTTACGGTTATCACTTATCACCAAAGAGCTCAAGCTGGGCCTTATCTTCCTGCAGCTGCATCCTATCACCAAGGAGCTCAGGCTGGGCCATATTGGGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTTCAGGTTATGATCAAAATGCCATCTACAAAAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATTTCCAACAATCCTGCAAACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCCCTACCCTGCTGGGTATGTTTAGAATGTCTACTCCAACTATCAAGGGTACCAGGCAGCTTATGGTCGCGGGGGCCCCCCGACTGATGCGGTGAGCGTGTTTCACACAAGCGGGGGAACGGGTACCGTCGTCGTCGCGCAAGGAGATTATCCCCCTTGTCTTCGGCCTGGGTCACCTAAACAGGCTTAT]
consensusID : consensus_7553#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence
[CTAGTTCTCTCTCTTCTTTCTCTGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAA]
[+] EMBL AU068527 [CTAGTTCTCTCTCTTCTTTCTCTGCAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCACTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTGCATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATCAGAATGCCATCTACAAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7553#0 TTTTTTTTTTTGTTAACAATTGGTCATCAATTCATTGAGCCCCACTCTTAAGATGTTCCC 60
consensus_7553#2 ------------------------------------------------------------
consensus_7553#1 ----------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTT 26
consensus_7553#0 TTAGCAGATAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAGATG 120
consensus_7553#2 ------------------------------CTAGTTCTCTCTCTTCTTTCTCTGCAGATG 30
consensus_7553#1 TTAGCAAAAAACACCATGATTCTAACATATTTCATACTTTGGTTCTTGAACAAGCAAATG 86
* * ** * * * *** ***
consensus_7553#0 CAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCAT 180
consensus_7553#2 CAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGTGGCATCAT 90
consensus_7553#1 CAATATGGCTAACAGGGGCACAAGCACCAATAGGTCAATCTGGGATGCCAGGGGCATCAT 146
*************** *********************************** ********
consensus_7553#0 GCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCA 240
consensus_7553#2 GCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCA 150
consensus_7553#1 GCCACAAGCTCAAGCTGCACCAGCATGTATAACCCCTTTTGCAGCTTCATGTAACAACCA 206
************************************************************
consensus_7553#0 CTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTG 300
consensus_7553#2 CTCTGACGGTTATCACTTATCAGCAAAGAGCTCAAGCTGTGCCTTATCTTCCTGCAGCTG 210
consensus_7553#1 CTCTTACGGTTATCACTTATCACCAAAGAGCTCAAGCTGGGCCTTATCTTCCTGCAGCTG 266
**** ***************** **************** ********************
consensus_7553#0 CATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCA 360
consensus_7553#2 CATCCTATCAGCAAGGAGCTCATGCTGGGCCATATTGTGCTCCACCTTATGCATATGCCA 270
consensus_7553#1 CATCCTATCACCAAGGAGCTCAGGCTGGGCCATATTGGGCTCCACCTTATGCATATGCCA 326
********** *********** ************** **********************
consensus_7553#0 ACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATC 420
consensus_7553#2 ACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGCAGGTTATGATC 330
consensus_7553#1 ACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTTCAGGTTATGATC 386
*********************************************** ************
consensus_7553#0 AGAATGCCATCTACAAGAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATCTCCA 480
consensus_7553#2 AGAATGCCATCTACAAGAA----------------------------------------- 349
consensus_7553#1 AAAATGCCATCTACAAAAATCCTGCCTACCCTGATGATCATGATCAGAATGCCATTTCCA 446
* ************** **
consensus_7553#0 ACAATCCTGCATACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCC 540
consensus_7553#2 ------------------------------------------------------------
consensus_7553#1 ACAATCCTGCAAACCACCATGCTGGCTATGATCAGAAAATGCCATCTACAACTATCATCC 506
consensus_7553#0 CTACCCTGCTGGGTATGTTCAGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTTA 600
consensus_7553#2 ------------------------------------------------------------
consensus_7553#1 CTACCCTGCTGGGTATGTTTAGAATGTCTACTCCAACTATCAAGGGTACCAGGCAGCTTA 566
consensus_7553#0 TGGTCGGCGGGGCCCCCCGACTGATGCGGTGAGCGTGATTCACACAAGCGGTGGAAGCGG 660
consensus_7553#2 ------------------------------------------------------------
consensus_7553#1 TGGTCGCGGGGGCCCCCCGACTGATGCGGTGAGCGTGTTTCACACAAGCGG-GGGAACGG 625
consensus_7553#0 ATACCGTTGACCGTCGCGCAGGCAGCTGATCCCCCTTCAGNCCTTCTGATGGTGCACTTC 720
consensus_7553#2 ------------------------------------------------------------
consensus_7553#1 GTACCGTCG-TCGTCGCGCAAGGAGATTATCCCCCTT--GTCTTCGGCCTGGGTCACCTA 682
consensus_7553#0 ACCCCAAATCCACTGGAGGAGCTCAGATGATGTATCCCTATCTAAGAATTTCTGTTTCTG 780
consensus_7553#2 ------------------------------------------------------------
consensus_7553#1 AACAGGCTTAT------------------------------------------------- 693
consensus_7553#0 TTACCATTTTCTGACTGAATGGATGAAGTAGAGGTGCTTTCTGCAACAAGGCATCTTGAA 840
consensus_7553#2 ------------------------------------------------------------
consensus_7553#1 ------------------------------------------------------------
consensus_7553#0 TTATGCTTATGATTTGATTGTTCGATGAAAAAAAAA 876
consensus_7553#2 ------------------------------------
consensus_7553#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||