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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2186 fasta sequence
[TTTTTTTTTTTTAATGGTACTGGTATCCTCGAGGCCTTGTATATTGCTTTTGCATTAAAGGATCCTCTCAATCTAAATACAGTCTTTTTTTTTCTGAAATTTACTACGTCATCCAACAAGAAAAGTAAAGAAAAAACACATTACATGTAAATTGGAGCATACTGTATTGTTTTTCATAGGAAAGGGCTAGAAAGATGGATGAATTTGGTAAACTTTCAGTGAAAAACTAAGCTCTCTATCTTTCTAATTTAAAGTTGGGGTAAAATATCTATCTTTGTAATTTAAAGTTGGGGTAAAAAGGTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGAGATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCGGAAGCTGAAGCGCACACAATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCAT-GGCGTGCTGCTTCGCCTGCCTGGGCGCTGGCGGCGGGAAGATGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGAAAGAGATAACCCACCAAACCTGGCCTCATCGACAGTGATGAAGCAGGATCAGGATTCGTTTCAATTAGCTGCTAACGAGGACATCCTTGTGAGCAATGGATCATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGGAGCTCGCTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCGGTTTTGGAAGAGTGTACAAAGGCTATTTGGAGACTGTCGACCAGGTTGTCGCAATAAAGCAGCTCGATCGCAACGGACTGCAAGGCAACAGGGAGTTCCTTGTTGAAGTTCTTATGCTCAGCATGCTGCACCACCCAAATCTTGTTAACCTTATTGGATATTGTGCCGATGGTGATCAGAGGCTTTTAGTTTATGAGTATATGCCATTAGGTTCTTTGGAAGACCATCTTCACGATCCTCCACCAGGCAAGTCACGGCTTGATTGGAATACAAGGATGAAGATAGCTGCTGGTGCAGCGAAGGGTTTGGAATATTTGCATGACAAAGCCAATCCTCCAGTCATATACCGAGATTTGAAGTGTTCAAATATCTTGCTTGGGGAGGGATATCACCCAAAATTGTCTGACTTTGGATTGGCAAAGCTCGGCCCAATTGGCGATAAATCCCATGTTTCCACTAGAGTGATGGGTACATATGGATACTGTGCTCCTGAGTATGCTATGACTGGCCAGCTGACTCTCAAGTCAGATGTTTATAGTTTTGGTGTTGTTCTGTTGGAGATCATTACAGGACGAAGAGCTATCGACAACACCCGAGCAGCAGGGGAGCAAAATCTTGTTGCATGGGCCCGGCCCTTGTTCAAGGACAGGAGGAAGTTCCCCCAGATGGCAGATCCAGCGCTTCATGGTCAGTATCCATCGAGAGGATTGTACCAGGCCTTGGCTGTTGCTGCGATGTGTGTCCAAGAGCAACCGACCATGAGACCCCTGATCGGGGATGTTGTTACAGCTCTCGCTTACCTTGCCTCCCAGACTTATGATCCAGAGGCACATGGCGTCCATCACACGTCACGTTTGATGTCTCCCGGCACACAAGGTGTATGAGGGATGCAGACTTAGGCTGAGGAGGTGCTGTAGAACAGAAAGCAGGAATTAAGGCTTCAGAAAGCCTAGAATATTTTTTGCTAGATATGGTACCTGAGGAGATGTTGCTGACAGTCCATGGAGATGACCAGCCCAGAGATTTTGTTCATAGCAAGAGAAAGAGAATCATAGAGAGAAATGAGATGGTTCCTGGTTTCTGCAACATGGAATGGTGATAGATTGATTTGTTTTCTCATGATAGGGATGGCTGCTGTTGTTGTACATGTGAATTTCTTTCTCGAGTCTGTATTTACATCAGTGTAGGAGTAGCCTGTAGCGTAGTACATTTGGGTTCAAGGAATTTTTGTCATCTCTTTGTTCCCTGTGGGTGTGAGTTTCGGTTGCGTGCTGGAGGGTTGTCAGCTGCAGTTTCAGTTGCCTGGTGATGTTATTGCGTATGCCTCAGACAGTATGCCATCACTTACTATTGATGCG]
[+] EMBL CF281397 [TTTTTTTTTTTTAATGGTACTGGTATCCTCGAGGCCTTGTATATTGCTTTTGCATTAAAGGATCCTCTCAATCTAAATACAGTCTTTTTTTTTCTGAAATTTACTACGTCATCCAACAAGAAAAGTAAAGAAAAAACACATTACATGTAAATTGGAGCATACTGTATTGTTTTTCATAGGAAAGGGCTAGAAAGATGGATGAATTTGGTAAACTTTCAGTGAAAAACTAAGCTCTCTATCTTTCTAATTTAAAGTTGGGGTAAAATATCTATCTTTGTAATTTAAAGTTGGGGTAAAAAGGTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGAGATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCGGAAGCTGAAGCGCACACAATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCATGGGCGTGCTGCTTCGCCTGCCT ]
[+] EMBL AK072806 [ CGCACACAATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCAT GGCGTGCTGCTTCGCCTGCCTGGGCGCTGGCGGCGGGAAGATGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGAAAGAGATAACCCACCAAACCTGGCCTCATCGACAGTGATGAAGCAGGATCAGGATTCGTTTCAATTAGCTGCTAACGAGGACATCCTTGTGAGCAATGGATCATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGGAGCTCGCTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCGGTTTTGGAAGAGTGTACAAAGGCTATTTGGAGACTGTCGACCAGGTTGTCGCAATAAAGCAGCTCGATCGCAACGGACTGCAAGGCAACAGGGAGTTCCTTGTTGAAGTTCTTATGCTCAGCATGCTGCACCACCCAAATCTTGTTAACCTTATTGGATATTGTGCCGATGGTGATCAGAGGCTTTTAGTTTATGAGTATATGCCATTAGGTTCTTTGGAAGACCATCTTCACGATCCTCCACCAGGCAAGTCACGGCTTGATTGGAATACAAGGATGAAGATAGCTGCTGGTGCAGCGAAGGGTTTGGAATATTTGCATGACAAAGCCAATCCTCCAGTCATATACCGAGATTTGAAGTGTTCAAATATCTTGCTTGGGGAGGGATATCACCCAAAATTGTCTGACTTTGGATTGGCAAAGCTCGGCCCAATTGGCGATAAATCCCATGTTTCCACTAGAGTGATGGGTACATATGGATACTGTGCTCCTGAGTATGCTATGACTGGCCAGCTGACTCTCAAGTCAGATGTTTATAGTTTTGGTGTTGTTCTGTTGGAGATCATTACAGGACGAAGAGCTATCGACAACACCCGAGCAGCAGGGGAGCAAAATCTTGTTGCATGGGCCCGGCCCTTGTTCAAGGACAGGAGGAAGTTCCCCCAGATGGCAGATCCAGCGCTTCATGGTCAGTATCCATCGAGAGGATTGTACCAGGCCTTGGCTGTTGCTGCGATGTGTGTCCAAGAGCAACCGACCATGAGACCCCTGATCGGGGATGTTGTTACAGCTCTCGCTTACCTTGCCTCCCAGACTTATGATCCAGAGGCACATGGCGTCCATCACACGTCACGTTTGATGTCTCCCGGCACACAAGGTGTATGAGGGATGCAGACTTAGGCTGAGGAGGTGCTGTAGAACAGAAAGCAGGAATTAAGGCTTCAGAAAGCCTAGAATATTTTTTGCTAGATATGGTACCTGAGGAGATGTTGCTGACAGTCCATGGAGATGACCAGCCCAGAGATTTTGTTCATAGCAAGAGAAAGAGAATCATAGAGAGAAATGAGATGGTTCCTGGTTTCTGCAACATGGAATGGTGATAGATTGATTTGTTTTCTCATGATAGGGATGGCTGCTGTTGTTGTACATGTGAATTTCTTTCTCGAGTCTGTATTTACATCAGTGTAGGAGTAGCCTGTAGCGTAGTACATTTGGGTTCAAGGAATTTTTGTCATCTCTTTGTTCCCTGTGGGTGTGAGTTTCGGTTGCGTGCTGGAGGGTTGTCAGCTGCAGTTTCAGTTGCCTGGTGATGTTATTGCGTATGCCTCAGACAGTATGCCATCACTTACTATTGATGCG]
[+] EMBL AK072306 [ ATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGGAGCTCGCTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCGGTTTTGGAAGAGTGTACAAAGGCTATTTGGAGACTGTCGACCAGGTTGTCGCAATAAAGCAGCTCGATCGCAACGGACTGCAAGGCAACAGGGAGTTTCTTGTTGAAGTTCTTATGCTCAGCATGCTGCACCACCCAAATCTTGTTAACCTTATTGGATATTGTGCCGATGGTGATCAGAGGCTTTTAGTTTATGAGTATATGCCATTAGGTTCTTTGGAAGACCATCTTCACGATCCTCCACCAGGCAAGTCACGGCTTGATTGGAATACAAGGATGAAGATAGCTGCTGGTGCAGCGAAGGGTTTGGAATATTTGCATGACAAAGCCAATCCTCCAGTCATATACCGAGATTTGAAGTGTTCAAATATCTTGCTTGGGGAGGGATATCACCCAAAATTGTCTGACTTTGGATTGGCAAAGCTCGGCCCAATTGGCGATAAATCCCATGTTTCCACTAGAGTGATGGGTACATATGGATACTGTGCTCCTGAGTATGCTATGACTGGCCAGCTGACTCTCAAGTCAGATGTTTATAGTTTTGGTGTTGTTCTGTTGGAGATCATTACAGGACGAAGAGCTATCGACAACACCCGAGCAGCAGGGGAGCAAAATCTTGTTGCATGGGCCCGGCCCTTGTTCAAGGACAGGAGGAAGTTCCCCCAGATGGCAGATCCAGCGCTTCATGGTCAGTATCCATCGAGAGGATTGTACCAGGCCTTGGCTGTTGCTGCGATGTGTGTCCAAGAGCAACCGACCATGAGACCCCTGATCGGGGATGTTGTTACAGCTCTCGCTTACCTTGCCTCCCAGACTTATGATCCAGAGGCACATGGCGTCCATCACACGTCACGTTTGATGTCTCCCGGCACACAAGGTGTATGAGGGATGCAGACTTAGGCTGAGGAGGTGCTGTAGAACAGAAAGCAGGAATTAAGGCTTCAGAAAGCCTAGAATATTTTTTGCTAGATATGGTACCTGAGGAGATGTTGCTGACAGTCCATGGAGATGACCAGCCCAGAGATTTTGTTCATAGCAAGAGAAAGAGAATCATAGAGAGAAATGAGATGGTTCCTGGTTTCTGCAACATGGAATGGTGATAGATTGATTTGTTTTCTCATGATAGGGATGGCTGCTGTTGTTGTACATGTGAATTTCTTTCTCGAGTCTGTATTTACATCAGTGTAGGAGTAGCCTGTAGCGTAGTACATTTGGGTTCAAGGAATTTTTGTCATCTCTTTGTTCCCTGTGGGTGTGAGTTTCGGTTGCGTGCTGGAGGGTTGTCAGCTGCAGTTTCAGTTGCCTGGTGATGTTATTGCGTATGCCTCAGACAGTATGCCATCACTTACTATTGATGCG]
consensusID : consensus_7577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[AAAGGTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGAGATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCGGAAGCTGAAGCGCACACTATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCATGGCGTGCTGCTTCGCCTGCCTGGGAAAAAAAGGCGGGAAGATGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGGTGATCCGTACCTGCCCCTCGGTCGCTTCTTTCTTTCTTTCTTTCTCGCAGAGAGCGTATTGCCTTAACCTGGTTAG]
[-] EMBL CF281398 [AAAGGTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGAGATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCGGAAGCTGAAGCGCACACTATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCATGGCGTGCTGCTTCGCCTGCCTGGGAAAAAAAGGCGGGAAGATGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGGTGATCCGTACCTGCCCCTCGGTCGCTTCTTTCTTTCTTTCTTTCTCGCAGAGAGCGTATTGCCTTAACCTGGTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7577#0 TTTTTTTTTTTTAATGGTACTGGTATCCTCGAGGCCTTGTATATTGCTTTTGCATTAAAG 60
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 GATCCTCTCAATCTAAATACAGTCTTTTTTTTTCTGAAATTTACTACGTCATCCAACAAG 120
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 AAAAGTAAAGAAAAAACACATTACATGTAAATTGGAGCATACTGTATTGTTTTTCATAGG 180
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 AAAGGGCTAGAAAGATGGATGAATTTGGTAAACTTTCAGTGAAAAACTAAGCTCTCTATC 240
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 TTTCTAATTTAAAGTTGGGGTAAAATATCTATCTTTGTAATTTAAAGTTGGGGTAAAAAG 300
consensus_7577#1 --------------------------------------------------------AAAG 4
****
consensus_7577#0 GTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGA 360
consensus_7577#1 GTACTAGGATGGAGGAACTAGCGGCTGAATGTATGTTCTGGAAGCGAAAGGAAGGGGAGA 64
************************************************************
consensus_7577#0 GATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCG 420
consensus_7577#1 GATTTTGAGTAGCTCAAAAATATGGAGTATTTTCTTCACCTTCTTCCCCACGCGGAAGCG 124
************************************************************
consensus_7577#0 GAAGCTGAAGCGCACACAATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTG 480
consensus_7577#1 GAAGCTGAAGCGCACACTATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTG 184
***************** ******************************************
consensus_7577#0 CTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCA 540
consensus_7577#1 CTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCA 244
************************************************************
consensus_7577#0 TGGCGTGCTGCTTCGCCTGCCTGGGCGCTGGCGGCGGGAAGATGAAGAAGAAGAAGAAGT 600
consensus_7577#1 TGGCGTGCTGCTTCGCCTGCCTGGGAAAAAAAGGCGGGAAGATGAAGAAGAAGAAGAAGT 304
************************* ****************************
consensus_7577#0 CGCCGCCTCAGATCCCACCGGCCTCAGAAAGAGATAACCCACCAAACCTGGCCTCATCGA 660
consensus_7577#1 CGCCGCCTCAGATCCCACCGGCCTCAGGTGATCCGTACCTGCC--CCTCGGTCGCTTCTT 362
*************************** *** ** * ** * * **
consensus_7577#0 CAGTGATGAAGCAGGATCAGGATTCGTTTCAATTAGCTGCTAACGAGGACATCCTTGTGA 720
consensus_7577#1 TCTTTCTTTCTTTCTCGCAGAGAGCGTATTGCCTTAAC-CTGGTTAG------------- 408
* * *** *** * * ** **
consensus_7577#0 GCAATGGATCATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGGAGCTCG 780
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 CTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCGGTTTTGGAAGAG 840
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 TGTACAAAGGCTATTTGGAGACTGTCGACCAGGTTGTCGCAATAAAGCAGCTCGATCGCA 900
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 ACGGACTGCAAGGCAACAGGGAGTTCCTTGTTGAAGTTCTTATGCTCAGCATGCTGCACC 960
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 ACCCAAATCTTGTTAACCTTATTGGATATTGTGCCGATGGTGATCAGAGGCTTTTAGTTT 1020
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 ATGAGTATATGCCATTAGGTTCTTTGGAAGACCATCTTCACGATCCTCCACCAGGCAAGT 1080
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 CACGGCTTGATTGGAATACAAGGATGAAGATAGCTGCTGGTGCAGCGAAGGGTTTGGAAT 1140
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 ATTTGCATGACAAAGCCAATCCTCCAGTCATATACCGAGATTTGAAGTGTTCAAATATCT 1200
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 TGCTTGGGGAGGGATATCACCCAAAATTGTCTGACTTTGGATTGGCAAAGCTCGGCCCAA 1260
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 TTGGCGATAAATCCCATGTTTCCACTAGAGTGATGGGTACATATGGATACTGTGCTCCTG 1320
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 AGTATGCTATGACTGGCCAGCTGACTCTCAAGTCAGATGTTTATAGTTTTGGTGTTGTTC 1380
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 TGTTGGAGATCATTACAGGACGAAGAGCTATCGACAACACCCGAGCAGCAGGGGAGCAAA 1440
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 ATCTTGTTGCATGGGCCCGGCCCTTGTTCAAGGACAGGAGGAAGTTCCCCCAGATGGCAG 1500
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 ATCCAGCGCTTCATGGTCAGTATCCATCGAGAGGATTGTACCAGGCCTTGGCTGTTGCTG 1560
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 CGATGTGTGTCCAAGAGCAACCGACCATGAGACCCCTGATCGGGGATGTTGTTACAGCTC 1620
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 TCGCTTACCTTGCCTCCCAGACTTATGATCCAGAGGCACATGGCGTCCATCACACGTCAC 1680
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 GTTTGATGTCTCCCGGCACACAAGGTGTATGAGGGATGCAGACTTAGGCTGAGGAGGTGC 1740
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 TGTAGAACAGAAAGCAGGAATTAAGGCTTCAGAAAGCCTAGAATATTTTTTGCTAGATAT 1800
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 GGTACCTGAGGAGATGTTGCTGACAGTCCATGGAGATGACCAGCCCAGAGATTTTGTTCA 1860
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 TAGCAAGAGAAAGAGAATCATAGAGAGAAATGAGATGGTTCCTGGTTTCTGCAACATGGA 1920
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 ATGGTGATAGATTGATTTGTTTTCTCATGATAGGGATGGCTGCTGTTGTTGTACATGTGA 1980
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 ATTTCTTTCTCGAGTCTGTATTTACATCAGTGTAGGAGTAGCCTGTAGCGTAGTACATTT 2040
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 GGGTTCAAGGAATTTTTGTCATCTCTTTGTTCCCTGTGGGTGTGAGTTTCGGTTGCGTGC 2100
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 TGGAGGGTTGTCAGCTGCAGTTTCAGTTGCCTGGTGATGTTATTGCGTATGCCTCAGACA 2160
consensus_7577#1 ------------------------------------------------------------
consensus_7577#0 GTATGCCATCACTTACTATTGATGCG 2186
consensus_7577#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||