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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1767 fasta sequence
[AGAGTAAAGAAGATGAAATAATTGAAGGAGAACCAGATCCAGAAATGGAAGTAGTTGCTGGACCTGGAGGAGAACCAAAAGTTGGAATGGTTTTCCTGAATGAAGACAAGGCCTATGACTGCTATGTCACCTATGCTGGAACTGTGGGGTTCAGCGTCCGAAAAGGATGGTTGGAAAAAACAGCAACAAATACTACAAAATCTCGGGCATATGTCTGTTCTAAAGAGGGATTCCGCTCTAAAAGTGTCAGTACTGATCCCAAGAAGCCACGGCCAGAAACAAGAACTGGTTGTCTGGCACACATGACTATTAAAATCACTGTGAGTGGCAAATATGTAGTGACTGAGTATGTGGCTGATCATAATCATGATCTTGAAACTCCTTTGGTGGACATCCAGGTTCTGAGATCACATAAGTTATTAGCAAAGTTACAGCAGCCTCCAGATCCACCAAGAGTTGTTTTGATACCAAATGATTATAAAAATTATGTAAGGACAAGGCACACAAAAGATATGCAATTAGGTGATACCCAGGCAATTTATGAATATTTGCAGAGGAAGAAAGGTGAACATCCTTCTTTCTTTTATGCCATCCAAGTGGATGAAGATGACCAGTTGACAAATGTATTCTGGGCAGATGTTAAGTCGATTCTGGATTACCACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGCCTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCATTGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAATGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGTGAAGCAGTTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTAAAGGACAATGAGTGGCTAGGTAAATTGTATGCAGATAGAGAAAGATGGGCTTTACCTTATGGACGTGATTCATTCTGTGCAGATATTGCAGCCGCACTCCGAAGTGATAATAACACTGATGCTATACTGGCAGATCTTCTAAAGAAAGAAACGGATTTCCCATCCTTCTTTAACAATTATGACAAACTTTTGGAGAACAAACGCCTAGCTGAACAACAAGCTGACTACCTTGGGGTTCAAATGGCACAGAGAGTAGCACCTCTGCGGATGCTTTGGCAAGCTGCTAATGCATATACTCCTACACTTTTTGAGATGTTCAGGTTGGAATTTGAACTGACCTTGACTTGCATGGCTTATTGCTGTGGTGAGATTGGACCAATATCTGAGTATGAGGTAACTGTCAAAAACAGGCCCCGTGACCATTTTGTTAGATTTGACTCATCAGAATGTATGGTTGTTTGTAGCTGTAAGAAATTTGAATTCACAGGTATTCCATGTTGCCATGTACTGAAAGTTCTTGAGGTAAGAAATATTAAAGAACTTCCACCACACTACATTTTGAAAAGATGGAGAAAGGATGCTCAGAGTGAATCTCCGAGGGAGAACTATGGTTTTGAAGCTGTAGATGAAGATCCCAGGTTCTTGTTGTCTAAACGATACAGCATGTTGTATC]
[+] EMBL AK120460 [AGAGTAAAGAAGATGAAATAATTGAAGGAGAACCAGATCCAGAAATGGAAGTAGTTGCTGGACCTGGAGGAGAACCAAAAGTTGGAATGGTTTTCCTGAATGAAGACAAGGCCTATGACTGCTATGTCACCTATGCTGGAACTGTGGGGTTCAGCGTCCGAAAAGGATGGTTGGAAAAAACAGCAACAAATACTACAAAATCTCGGGCATATGTCTGTTCTAAAGAGGGATTCCGCTCTAAAAGTGTCAGTACTGATCCCAAGAAGCCACGGCCAGAAACAAGAACTGGTTGTCTGGCACACATGACTATTAAAATCACTGTGAGTGGCAAATATGTAGTGACTGAGTATGTGGCTGATCATAATCATGATCTTGAAACTCCTTTGGTGGACATCCAGGTTCTGAGATCACATAAGTTATTAGCAAAGTTACAGCAGCCTCCAGATCCACCAAGAGTTGTTTTGATACCAAATGATTATAAAAATTATGTAAGGACAAGGCACACAAAAGATATGCAATTAGGTGATACCCAGGCAATTTATGAATATTTGCAGAGGAAGAAAGGTGAACATCCTTCTTTCTTTTATGCCATCCAAGTGGATGAAGATGACCAGTTGACAAATGTATTCTGGGCAGATGTTAAGTCGATTCTGGATTACCACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGCCTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCATTGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAATGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGTGAAGCAGTTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTAAAGGACAATGAGTGGCTAGGTAAATTGTATGCAGATAGAGAAAGATGGGCTTTACCTTATGGACGTGATTCATTCTGTGCAGATATTGCAGCCGCACTCCGAAGTGATAATAACACTGATGCTATACTGGCAGATCTTCTAAAGAAAGAAACGGATTTCCCATCCTTCTTTAACAATTATGACAAACTTTTGGAGAACAAACGCCTAGCTGAACAACAAGCTGACTACCTTGGGGTTCAAATGGCACAGAGAGTAGCACCTCTGCGGATGCTTTGGCAAGCTGCTAATGCATATACTCCTACACTTTTTGAGATGTTCAGGTTGGAATTTGAACTGACCTTGACTTGCATGGCTTATTGCTGTGGTGAGATTGGACCAATATCTGAGTATGAGGTAACTGTCAAAAACAGGCCCCGTGACCATTTTGTTAGATTTGACTCATCAGAATGTATGGTTGTTTGTAGCTGTAAGAAATTTGAATTCACAGGTATTCCATGTTGCCATGTACTGAAAGTTCTTGAGGTAAGAAATATTAAAGAACTTCCACCACACTACATTTTGAAAAGATGGAGAAAGGATGCTCAGAGTGAATCTCCGAGGGAGAACTATGGTTTTGAAGCTGTAGATGAAGATCCCAGGTTCTTGTTGTCTAAACGATACAGCATGTTGTATC]
[+] EMBL CB661443 [ ATCTGCAATGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGTGAAGCAGTTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTAAAGGACAATGAGTGGCTAGGTAAATTGTATGCAGATAGAGAAAGATGGGCTTTACCTTATGGACGTGATTCATTCTGTGCAGATATTGCAGCCGCACTCCGAAGTGATAATAACACTGATGCTATACTGGCAGATCTTCTAAAGAAAGAAACGGATTTCCCATCCTTCTTTAACAATTATGACAAACTTTTGGAGAACAAACGCCTAGCTGAACAACAAGCTGACTACCTTGGGGTTCAAATGGCACAGAGAGTAGCACCTCTGCGGATGCTTTGGCAAGCTGCTAATGCATATACTCCTACACTTTTTGAGATGTTCAGGTTGGAATTTGAACTGACCTTGACTTGCATGGCTTATTGCTGTGGTGAGATTGGACCAATATCTGAGTATGAGGTAACTGTCAAAAACAGGCCCCGTGACCATTTTGTTAGATTTGACTCATCAGAATGTATGGTTGTTTGTAGCTGTAAGAAATTTGAATTCACAGGTATTCCATGTTGCCATGTACTGAAAGTTCTTGAGGTAAGAAATATTAAAGAACTTC ]
[+] EMBL CB641486 [ GCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTAAAGGACAATGAGTGGCTAGGTAAATTGTATGCAGATAGAGAAAGATGGGCTTTACCTTATGGACGTGATTCATTCTGTGCAGATATTGCAGCCGCACTCCGAAGTGATAATAACACTGATGCTATACTGGCAGATCTTCTAAAGAAAGAAACGGATTTCCCATCCTTCTTTAACAATTATGACAAACTTTTGGAGAACAAACGCCTAGCTGAACAACAAGCTGACTACCTTGGGGTTCAAATGGCACAGAGAGTAGCACCTCTGCGGATGCTTTGGCAAGCTGCTAATGCATATACTCCTACACTTTTTGAGATGTTCAGGTTGGAATTTGAACTGACCTTGACTTGCATGGCTTATTGCTGTGGTGAGATTGGACCAATATCTGAGTATGAGGTAACTGTCAAAAACAGGCCCCGTGACCATTTTGTTAGATTTGACTCATCAGAATGTATGGTTGTTTGTAGCTGTAAGAAATTTGAATTCACAGGTATTCCATGTTGCCATGTACTGAAAGTTCTTGAGGTAAGAAATATTAAAGAACTTCCACCACACTACATTTTGAAAAGATGGAGAAAGGATGCTCAGAGTGAATCTCCGAGGGAGAACTATGGTTTTGAAGCTGTAGATGAAGATCCCAGGT ]
consensusID : consensus_7586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[AGTCGATTCTGGATTACCACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGCCTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCATTGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAATGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGNGAAGCAGTTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTNNNNGACAATGAGTGGCTNNNTAAATTGTATGCAGATANNGNANNNTGGGCTTTACCTTATGGACGTGANNCATTCTGTGCANNTATTGNNNNNNCACTCNNNNNNGATANTNNC]
[+] EMBL CF196482 [AGTCGATTCTGGATTACCACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGCCTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCATTGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAATGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGNGAAGCAGTTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATGCCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCATGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAGATAAGTACAATCTNNNNGACAATGAGTGGCTNNNTAAATTGTATGCAGATANNGNANNNTGGGCTTTACCTTATGGACGTGANNCATTCTGTGCANNTATTGNNNNNNCACTCNNNNNNGATANTNNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7586#0 AGAGTAAAGAAGATGAAATAATTGAAGGAGAACCAGATCCAGAAATGGAAGTAGTTGCTG 60
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 GACCTGGAGGAGAACCAAAAGTTGGAATGGTTTTCCTGAATGAAGACAAGGCCTATGACT 120
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 GCTATGTCACCTATGCTGGAACTGTGGGGTTCAGCGTCCGAAAAGGATGGTTGGAAAAAA 180
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 CAGCAACAAATACTACAAAATCTCGGGCATATGTCTGTTCTAAAGAGGGATTCCGCTCTA 240
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 AAAGTGTCAGTACTGATCCCAAGAAGCCACGGCCAGAAACAAGAACTGGTTGTCTGGCAC 300
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 ACATGACTATTAAAATCACTGTGAGTGGCAAATATGTAGTGACTGAGTATGTGGCTGATC 360
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 ATAATCATGATCTTGAAACTCCTTTGGTGGACATCCAGGTTCTGAGATCACATAAGTTAT 420
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 TAGCAAAGTTACAGCAGCCTCCAGATCCACCAAGAGTTGTTTTGATACCAAATGATTATA 480
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 AAAATTATGTAAGGACAAGGCACACAAAAGATATGCAATTAGGTGATACCCAGGCAATTT 540
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 ATGAATATTTGCAGAGGAAGAAAGGTGAACATCCTTCTTTCTTTTATGCCATCCAAGTGG 600
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 ATGAAGATGACCAGTTGACAAATGTATTCTGGGCAGATGTTAAGTCGATTCTGGATTACC 660
consensus_7586#1 ------------------------------------------AGTCGATTCTGGATTACC 18
******************
consensus_7586#0 ACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGC 720
consensus_7586#1 ACTACTTTGGTGATGTACTGTGTGTTGACACAAGATATAGCACAAGTGATCATAGTAGGC 78
************************************************************
consensus_7586#0 CTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCAT 780
consensus_7586#1 CTCTATTGTTGTTTATTGGTGTTAACCATCATAAGCAGCCAGTCATATTTGGTGCAGCAT 138
************************************************************
consensus_7586#0 TGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAA 840
consensus_7586#1 TGGTTTATGATGAATCAGTTGAATCCTTCAAATGGTTGTTTGAAACTTTCAAATCTGCAA 198
************************************************************
consensus_7586#0 TGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGTGAAGCAG 900
consensus_7586#1 TGAGTGGCAAGCAACCAAAAACAGTTATGATCGATCAATCTACAGCAATCAGNGAAGCAG 258
**************************************************** *******
consensus_7586#0 TTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATG 960
consensus_7586#1 TTGCTTCTGTTTGGCCAAGGACCACCCAGCGCTTTTCACTGATTCATTTATATAAAAATG 318
************************************************************
consensus_7586#0 CCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCA 1020
consensus_7586#1 CCACTAAGATATTAAGGGATGCCTTCCAAGCCTCGGAAACTTTTGCAGACGATTTTAGCA 378
************************************************************
consensus_7586#0 TGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAG 1080
consensus_7586#1 TGTGGTTGTATGGCTATGAGGAGGAGGGGGATTTCTTGTCAAGCTGGGAAATCCTCTCAG 438
************************************************************
consensus_7586#0 ATAAGTACAATCTAAAGGACAATGAGTGGCTAGGTAAATTGTATGCAGATAGAGAAAGAT 1140
consensus_7586#1 ATAAGTACAATCTNNNNGACAATGAGTGGCTNNNTAAATTGTATGCAGATANNGNANNNT 498
************* ************** ***************** * * *
consensus_7586#0 GGGCTTTACCTTATGGACGTGATTCATTCTGTGCAGATATTGCAGCCGCACTCCGAAGTG 1200
consensus_7586#1 GGGCTTTACCTTATGGACGTGANNCATTCTGTGCANNTATTGNNNNNNCACTCNNNNNNG 558
********************** *********** ***** ***** *
consensus_7586#0 ATAATAACACTGATGCTATACTGGCAGATCTTCTAAAGAAAGAAACGGATTTCCCATCCT 1260
consensus_7586#1 ATANTNNC---------------------------------------------------- 566
*** * *
consensus_7586#0 TCTTTAACAATTATGACAAACTTTTGGAGAACAAACGCCTAGCTGAACAACAAGCTGACT 1320
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 ACCTTGGGGTTCAAATGGCACAGAGAGTAGCACCTCTGCGGATGCTTTGGCAAGCTGCTA 1380
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 ATGCATATACTCCTACACTTTTTGAGATGTTCAGGTTGGAATTTGAACTGACCTTGACTT 1440
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 GCATGGCTTATTGCTGTGGTGAGATTGGACCAATATCTGAGTATGAGGTAACTGTCAAAA 1500
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 ACAGGCCCCGTGACCATTTTGTTAGATTTGACTCATCAGAATGTATGGTTGTTTGTAGCT 1560
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 GTAAGAAATTTGAATTCACAGGTATTCCATGTTGCCATGTACTGAAAGTTCTTGAGGTAA 1620
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 GAAATATTAAAGAACTTCCACCACACTACATTTTGAAAAGATGGAGAAAGGATGCTCAGA 1680
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 GTGAATCTCCGAGGGAGAACTATGGTTTTGAAGCTGTAGATGAAGATCCCAGGTTCTTGT 1740
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 TGTCTAAACGATACAGCATGTTGTATC 1767
consensus_7586#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||