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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1570 fasta sequence
[CCCTCGTGGCCTCAGCTCGTCGATCGATCGATCTCTTAGTCCGATCTACTTGCGCGCGGCTAGCTGCTGCTGCTGCTGCGTGTTGGGGGTGGTGGTGCGAGGAGTGATTGGTTGGTTGATAGATTGATCGATCGAGCGATGGCCGTGGCGGTGGAGGAGATCGTCAGGAGGGCCGGCGGGTGCGCCGTGATCGACGGCGGATTCGCCACGCAGCTGGAGGCGCTCGGCGCCGACATCAACGACCCGCTCTGGAGCGCCGCCTGCCTCATCACCAAGCCGCACCTCATCAAGGAGGTTCACATGCAATATCTTGAAGCAGGTGCCGATGTCATCATTTCCTCATCATACCAGGCAACTATCCCAGGATTCTTAGCCAGAGGAATGCTTCTTGAGGAGGCAGAAGGGTTACTGCGAAGGAGCATTGAATTGGCACTGGAAGCACGAGATGAATTCTGGAAGTCGACGCTGAGGAAGTCCAAGCCTGTTTACAACCGTGCTCTGGTCGCCGCATCCATTGGGAGCTATGGAGCTTACCTTGCCGATGGCTCAGAGTACAGTGGATCGTATGGAGAAGACATCACGGCAGAGAAACTGAAGGACTTCCACAGGCGCCGGCTGCAGGTTCTTGCGAGCGCTGGCCCTGACTTGATCGCGTTTGAGGCCATCCCGAACAAAATGGAGGCACAGGCTTTAGTTGAGCTTCTGGAGGAAGAGAACATCCAGGTCCCCTCCTGGATCTGCTTCAGCTCAGTGGACGGCAAGAACCTGTGCTCAGGAGAGAGCTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAAGGTGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGGTGAGCACGACCTGTTACACTTAATCTGTTCTCATCACTGGCACGCCAAGAAAGATTAGCACAGATCTGTTCTCATCACTGGCACGCCAAGAAAGATTAGCACATTTCCGTGCGAATTCTTGGTCGTCTTGATCATCAAACTGACTGGTTTTTTTGATGCGTCGCATGCACAGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACGCCGTCGACGATCCGGGCCGTCTCCAAGGTCCTCAAGGGCAAGACGTCCTATTCAGCAACTCAGATTTGAGACCGACTACTTGGTAGTGCAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGCAGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGAGCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGTAATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGCACTGATAATG]
[+] EMBL AK068002 [CCCTCGTGGCCTCAGCTCGTCGATCGATCGATCTCTTAGTCCGATCTACTTGCGCGCGGCTAGCTGCTGCTGCTGCTGCGTGTTGGGGGTGGTGGTGCGAGGAGTGATTGGTTGGTTGATAGATTGATCGATCGAGCGATGGCCGTGGCGGTGGAGGAGATCGTCAGGAGGGCCGGCGGGTGCGCCGTGATCGACGGCGGATTCGCCACGCAGCTGGAGGCGCTCGGCGCCGACATCAACGACCCGCTCTGGAGCGCCGCCTGCCTCATCACCAAGCCGCACCTCATCAAGGAGGTTCACATGCAATATCTTGAAGCAGGTGCCGATGTCATCATTTCCTCATCATACCAGGCAACTATCCCAGGATTCTTAGCCAGAGGAATGCTTCTTGAGGAGGCAGAAGGGTTACTGCGAAGGAGCATTGAATTGGCACTGGAAGCACGAGATGAATTCTGGAAGTCGACGCTGAGGAAGTCCAAGCCTGTTTACAACCGTGCTCTGGTCGCCGCATCCATTGGGAGCTATGGAGCTTACCTTGCCGATGGCTCAGAGTACAGTGGATCGTATGGAGAAGACATCACGGCAGAGAAACTGAAGGACTTCCACAGGCGCCGGCTGCAGGTTCTTGCGAGCGCTGGCCCTGACTTGATCGCGTTTGAGGCCATCCCGAACAAAATGGAGGCACAGGCTTTAGTTGAGCTTCTGGAGGAAGAGAACATCCAGGTCCCCTCCTGGATCTGCTTCAGCTCAGTGGACGGCAAGAACCTGTGCTCAGGAGAGAGCTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAAGGTGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGGTGAGCACGACCTGTTACACTTAATCTGTTCTCATCACTGGCACGCCAAGAAAGATTAGCACAGATCTGTTCTCATCACTGGCACGCCAAGAAAGATTAGCACATTTCCGTGCGAATTCTTGGTCGTCTTGATCATCAAACTGACTGGTTTTTTTGATGCGTCGCATGCACAGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACGCCGTCGACGATCCGGGCCGTCTCCAAGGTCCTCAAGGGCAAGACGTCCTATTCAGCAACTCAGATTTGAGACCGACTACTTGGTAGTGCAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGCAGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGAGCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGTAATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGCACTGATAATG]
[+] EMBL CF329251 [CCCTCGTGGCCTCAGCTCGTCGATCGATCGATCTCTTAGTCCGATCTACTTGCGCGCGGCTAGCTGCTGCTGCTGCTGCGTGTTGGGGGTGGTGGTGCGAGGAGTGATTGGTTGGTTGATAGATTGATCGATCGAGCGATGGCCGTGGCGGTGGAGGAGATCGTCAGGAGGGCCGGCGGGTGCGCCGTGATCGACGGCGGATTCGCCACGCAGCTGGAGGCGCTCGGCGCCGACATCAACGACCCGCTCTGGAGCGCCGCCTGCCTCATCACCAAGCCGCACCTCATCAAGGAGGTTCACATGCAATATCTTGAAGCAGGTGCCGATGTCATCATTTCCTCATCATACCAGGCAACTATCCCAGGATTCTTAGCCAGAGGAATGCTTCTTGAGGAGGCAG ]
consensusID : consensus_7642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 663 fasta sequence
[CTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAA-GGTGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACG-CCGTCGACGATCCGGGCCGTNTCCAAGGTCCTCAAGGGCAAGACGTCCTATTCA-GCAACTCAGATTTGAGACCGACTACTTGGTAGTGCAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGCAGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGAGCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGTAATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGCACTGATAATGCAAAAGAAAAAAAAAAGTGTCCAAAAAAAAAAAAAAAAAAAAAGCGGC]
[-] EMBL CF329252 [CTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAA GGTGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACGCCCGTCGACNGTCCGGGCCGTTTCCAATGTCCTCAAGGGCAAGACGTCCTATTCA GCAACTCAGATTTGAGACCGACTACTTGGTAGTGCAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGCAGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGAGCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGTAATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGCACTGATAATGCAAAAGAAAAAAAAAA ]
[+] EMBL OSC20251 [ AGCGACAA GGTGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACG CCGTCGACGATCCGGGCCGTNTCCAAGGTCCTCAAGGGCAAGACGTCCTATTCAGGCAACTCAGATT ]
[-] EMBL CA759444 [ cgaGACAAGGGGGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACG CCGTCGACGATCCGGGCCGTCTCCAAGGTCCTCAAGGGCAAGACGGCCTATTCA GCAACTCAGATTTGAGACTGACTACTTGGTAGTGCAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGCAGCGGACATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGAGCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGTAATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGCACTGATAATGCAAAAGAACAAGTTGCGTGTCCAAAAAAAAAAAAAAAAAAAAAGCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7642#0 CCCTCGTGGCCTCAGCTCGTCGATCGATCGATCTCTTAGTCCGATCTACTTGCGCGCGGC 60
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 TAGCTGCTGCTGCTGCTGCGTGTTGGGGGTGGTGGTGCGAGGAGTGATTGGTTGGTTGAT 120
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 AGATTGATCGATCGAGCGATGGCCGTGGCGGTGGAGGAGATCGTCAGGAGGGCCGGCGGG 180
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 TGCGCCGTGATCGACGGCGGATTCGCCACGCAGCTGGAGGCGCTCGGCGCCGACATCAAC 240
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 GACCCGCTCTGGAGCGCCGCCTGCCTCATCACCAAGCCGCACCTCATCAAGGAGGTTCAC 300
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 ATGCAATATCTTGAAGCAGGTGCCGATGTCATCATTTCCTCATCATACCAGGCAACTATC 360
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 CCAGGATTCTTAGCCAGAGGAATGCTTCTTGAGGAGGCAGAAGGGTTACTGCGAAGGAGC 420
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 ATTGAATTGGCACTGGAAGCACGAGATGAATTCTGGAAGTCGACGCTGAGGAAGTCCAAG 480
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 CCTGTTTACAACCGTGCTCTGGTCGCCGCATCCATTGGGAGCTATGGAGCTTACCTTGCC 540
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 GATGGCTCAGAGTACAGTGGATCGTATGGAGAAGACATCACGGCAGAGAAACTGAAGGAC 600
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 TTCCACAGGCGCCGGCTGCAGGTTCTTGCGAGCGCTGGCCCTGACTTGATCGCGTTTGAG 660
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 GCCATCCCGAACAAAATGGAGGCACAGGCTTTAGTTGAGCTTCTGGAGGAAGAGAACATC 720
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 CAGGTCCCCTCCTGGATCTGCTTCAGCTCAGTGGACGGCAAGAACCTGTGCTCAGGAGAG 780
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 AGCTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAAGGTGACCATCGTGGGTGTC 840
consensus_7642#1 --CTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAAGGTGACCATCGTGGGTGTC 58
**********************************************************
consensus_7642#0 AACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAG 900
consensus_7642#1 AACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAG 118
************************************************************
consensus_7642#0 AAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGG 960
consensus_7642#1 AAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGG 178
************************************************************
consensus_7642#0 CTGGTGAGCACGACCTGTTACACTTAATCTGTTCTCATCACTGGCACGCCAAGAAAGATT 1020
consensus_7642#1 CTG--------------------------------------------------------- 181
***
consensus_7642#0 AGCACAGATCTGTTCTCATCACTGGCACGCCAAGAAAGATTAGCACATTTCCGTGCGAAT 1080
consensus_7642#1 ------------------------------------------------------------
consensus_7642#0 TCTTGGTCGTCTTGATCATCAAACTGACTGGTTTTTTTGATGCGTCGCATGCACAGCCGG 1140
consensus_7642#1 --------------------------------------------------------CCGG 185
****
consensus_7642#0 CACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCG 1200
consensus_7642#1 CACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCG 245
************************************************************
consensus_7642#0 CGAGCTTAGTCGGCGGATGCTGCCGGACGACGCCGTCGACGATCCGGGCCGTCTCCAAGG 1260
consensus_7642#1 CGAGCTTAGTCGGCGGATGCTGCCGGACGACGCCGTCGACGATCCGGGCCGTNTCCAAGG 305
**************************************************** *******
consensus_7642#0 TCCTCAAGGGCAAGACGTCCTATTCAGCAACTCAGATTTGAGACCGACTACTTGGTAGTG 1320
consensus_7642#1 TCCTCAAGGGCAAGACGTCCTATTCAGCAACTCAGATTTGAGACCGACTACTTGGTAGTG 365
************************************************************
consensus_7642#0 CAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGC 1380
consensus_7642#1 CAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGC 425
************************************************************
consensus_7642#0 AGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGA 1440
consensus_7642#1 AGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGA 485
************************************************************
consensus_7642#0 GCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGT 1500
consensus_7642#1 GCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGT 545
************************************************************
consensus_7642#0 AATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGC 1560
consensus_7642#1 AATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGC 605
************************************************************
consensus_7642#0 ACTGATAATG------------------------------------------------ 1570
consensus_7642#1 ACTGATAATGCAAAAGAAAAAAAAAAGTGTCCAAAAAAAAAAAAAAAAAAAAAGCGGC 663
**********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||