cluster # 7729

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Oryza sativa
cluster # 7729 cluster # 7729 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7729#0 length = 844 sequences # 4

consensus_7729#1 length = 489 sequences # 1

consensusID : consensus_7729#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 844
fasta sequence

                              [TATCAGGCTGCTGCACTAGACTAGTAGCTCAAGCCTCAGCCTCATCCCCCCATTTGATACGAGAGAGAGAAGAGGAGAAGAAAGCAAAAGCCCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGC-GGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAGGCAGAAGTCACAGAATTAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAAAATCGTTGACGAAGAAAGGGCAAG]

[+] EMBL CB658342             [TATCAGGCTGCTGCACTAGACTAGTAGCTCAAGCCTCAGCCTCATCCCCCCATTTGATACGAGAGAGAGAAGAGGAGAAGAAAGCAAAAGCTCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGC GGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCc                                                                                       ]
[+] EMBL CB642326             [                                                                                     AAAAGCCCTCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGC GGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAGGCAGAAGTCACAGAATTAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAA                        ]
[+] EMBL CB642329             [                                                                                      AAAGCCCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGC GGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAGGCAGAAGTCACAGAATTAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAAAATCGTTGACGAAGAAAGGGCAA ]
[+] EMBL CB642245             [                                                                                                                                                                               AAAGGAGGCAGGGAAACCATCCTCCTGTTCGTCATCCCCATTGGCGGCTCCGAATCGGTACAAGAACTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCACGGCTCAGACTGATACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAGGCAGAAGTCACAGAATTAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAAAATCGTTGACGAAGAAAGGGCAAG]




>consensus_7729#0
TATCAGGCTGCTGCACTAGACTAGTAGCTCAAGCCTCAGCCTCATCCCCCCATTTGATAC
GAGAGAGAGAAGAGGAGAAGAAAGCAAAAGCCCCCTCTGCAGAAAAGAAGCGTTTTTTTT
TCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACC
ACGCGGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAA
CTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGG
TTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTAC
GTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAG
TAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAA
CTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTG
AGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTT
TGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCC
GTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTG
CTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAGGCAGAAGTCACAGAAT
TAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAAAATCGTTGACGAAGAAAGGG
CAAG

consensusID : consensus_7729#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [AAGAAAGCAAAAGCTCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGCGGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGGTTTTTCATTCTACAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCT]

[+] EMBL CB639530             [AAGAAAGCAAAAGCTCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGCGGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGGTTTTTCATTCTACAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCT]




>consensus_7729#1
AAGAAAGCAAAAGCTCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCA
AACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGCGGGAAACCAGCCT
CAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTG
CGGGAGGTTTTTCATTCTACAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGT
TCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACG
TCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGT
AGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAAC
TGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGA
GAAGGGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7729#0      TATCAGGCTGCTGCACTAGACTAGTAGCTCAAGCCTCAGCCTCATCCCCCCATTTGATAC 60
consensus_7729#1      ------------------------------------------------------------
                                                                                  

consensus_7729#0      GAGAGAGAGAAGAGGAGAAGAAAGCAAAAGCCCCCTCTGCAGAAAAGAAGCGTTTTTTTT 120
consensus_7729#1      -----------------AAGAAAGCAAAAGCTCCCTCTGCAGAAAAGAAGCGTTTTTTTT 43
                                       ************** ****************************

consensus_7729#0      TCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACC 180
consensus_7729#1      TCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACC 103
                      ************************************************************

consensus_7729#0      ACGCGGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAA 240
consensus_7729#1      ACGCGGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAA 163
                      ************************************************************

consensus_7729#0      CTCCGCGGAGATCCGTGCGGGAG----------------ATGACCCGGGCAGTAACTCTT 284
consensus_7729#1      CTCCGCGGAGATCCGTGCGGGAGGTTTTTCATTCTACAGATGACCCGGGCAGTAACTCTT 223
                      ***********************                *********************

consensus_7729#0      GATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTA 344
consensus_7729#1      GATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTA 283
                      ************************************************************

consensus_7729#0      CGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAAT 404
consensus_7729#1      CGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAAT 343
                      ************************************************************

consensus_7729#0      GGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAG 464
consensus_7729#1      GGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAG 403
                      ************************************************************

consensus_7729#0      ACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAG 524
consensus_7729#1      ACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAG 463
                      ************************************************************

consensus_7729#0      CTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAA 584
consensus_7729#1      CTTGCAATGAAGTTTGAGAAGGGTCT---------------------------------- 489
                      **************************                                  

consensus_7729#0      TGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTA 644
consensus_7729#1      ------------------------------------------------------------
                                                                                  

consensus_7729#0      GAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCT 704
consensus_7729#1      ------------------------------------------------------------
                                                                                  

consensus_7729#0      ATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAG 764
consensus_7729#1      ------------------------------------------------------------
                                                                                  

consensus_7729#0      GCAGAAGTCACAGAATTAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAAAATC 824
consensus_7729#1      ------------------------------------------------------------
                                                                                  

consensus_7729#0      GTTGACGAAGAAAGGGCAAG 844
consensus_7729#1      --------------------