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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1275 fasta sequence
[CTACTACTACTACGGCTCAACTCCACTTGCTGTTGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTGTGGGAAAGAGATCACAGAGGGTACTTGGCTAGCTCACTCCATCAATCGATCGATCGGTACAGTTTAGCAACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCGCTACTACGTCCACGTCCTTTTGTGTTACGGATTGGTTCGCGAGCGAGATAACTGCGTGTTGTTCTAAGTTCTAGTAAGTTGGGGGGAGGCCATGGGGGTGCACACGAAGTCGATGAGCTGGTACATGGGGACGCCGGCCTCGCCGTCGCCGGGGAGCGCCGGGGAGGCGCAGCACGCACTGAGCAGCGGCGGGGGAGGGGGCAGCGACGCCAGCTTCGACACCAACATGGTGATCATCCTCGCGGCGCTGCTCTTCGCGCTGCTGTTCGCGCTCGGGCTCAACTCGCTCGCGCGGCTCATCATCCGGTGGGCGCGGCGGGCGGCGACGGGGGAAGGCGCCGGCGGCGGCGTGGAGGGGGCGGGCGCCGGCGGCGGGCTCAAAAAGCGCGCGCTCAGGAGCATCCCCATCAAGGTGTACGGCGGAGGTGGTGGAGGGAGCCCCGCCGCCGCGGCGGAGGTCTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGCTGCGGCCATGGCTTCCACGTCCGCTGCGTCGACACGTGGCTCGTCTCCCACGACTCCTGCCCCACGTGCCGGGGCTCCGTCCTCCACGACGCCACCACCAAGCACAAACCAACCGCCGCCGCCGCCGCCGCGGGCAGCCGGCGGCCGGGGAGCGAGGTCGACGCCCCCGCCGCCGCCGCCGTGACGGTGGTCATCGCGTGACCGGGGCAGGTGGGCCCCCGCTTCCCCCAGCCGCTGTGGGCCCAGTGTAACATACCCATGTAAAAAATCTCCTTTCTTGTTTTGGACCTATGTAAAAAAATCTCTCCTTGGGCCAGGCCATGGCCCATGGCCGTGAGATATTTTCCGACGTTGGTGCTGTGAGAGGATGACGGGTGGGCCCGCTCGTCTGTTCAGTTTGTAGGTTACTCACAGTAGTCCACCGTCCATTCGATTTCGATCTTGGCTAGCAAGGGCAGTTGTTGTGGAGGTTAGGAGGTACAGGACGCTTACAGTTACGTACAGGCTTGTAATATTACCGTATAAGTAGTATCATTTTGCGAGGAAATACCGTAT]
[+] EMBL AK065060 [CTACTACTACTACGGCTCAACTCCACTTGCTGTTGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTGTGGGAAAGAGATCACAGAGGGTACTTGGCTAGCTCACTCCATCAATCGATCGATCGGTACAGTTTAGCAACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCGCTACTACGTCCACGTCCTTTTGTGTTACGGATTGGTTCGCGAGCGAGATAACTGCGTGTTGTTCTAAGTTCTAGTAAGTTGGGGGGAGGCCATGGGGGTGCACACGAAGTCGATGAGCTGGTACATGGGGACGCCGGCCTCGCCGTCGCCGGGGAGCGCCGGGGAGGCGCAGCACGCACTGAGCAGCGGCGGGGGAGGGGGCAGCGACGCCAGCTTCGACACCAACATGGTGATCATCCTCGCGGCGCTGCTCTTCGCGCTGCTGTTCGCGCTCGGGCTCAACTCGCTCGCGCGGCTCATCATCCGGTGGGCGCGGCGGGCGGCGACGGGGGAAGGCGCCGGCGGCGGCGTGGAGGGGGCGGGCGCCGGCGGCGGGCTCAAAAAGCGCGCGCTCAGGAGCATCCCCATCAAGGTGTACGGCGGAGGTGGTGGAGGGAGCCCCGCCGCCGCGGCGGAGGTCTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGCTGCGGCCATGGCTTCCACGTCCGCTGCGTCGACACGTGGCTCGTCTCCCACGACTCCTGCCCCACGTGCCGGGGCTCCGTCCTCCACGACGCCACCACCAAGCACAAACCAACCGCCGCCGCCGCCGCCGCGGGCAGCCGGCGGCCGGGGAGCGAGGTCGACGCCCCCGCCGCCGCCGCCGTGACGGTGGTCATCGCGTGACCGGGGCAGGTGGGCCCCCGCTTCCCCCAGCCGCTGTGGGCCCAGTGTAACATACCCATGTAAAAAATCTCCTTTCTTGTTTTGGACCTATGTAAAAAAATCTCTCCTTGGGCCAGGCCATGGCCCATGGCCGTGAGATATTTTCCGACGTTGGTGCTGTGAGAGGATGACGGGTGGGCCCGCTCGTCTGTTCAGTTTGTAGGTTACTCACAGTAGTCCACCGTCCATTCGATTTCGATCTTGGCTAGCAAGGGCAGTTGTTGTGGAGGTTAGGAGGTACAGGACGCTTACAGTTACGTACAGGCTTGTAATATTACCGTATAAGTAGTATCATTTTGCGAGGAAATACCGTAT]
consensusID : consensus_7735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 869 fasta sequence
[TATCTACCTGGAGTTAGTGTAGGTGAGAGGTTAGGTCGATCATGGCGAGTGGTGTTGCGGCGCCGGCGCCGAGCGTGTTCGAGGCGGCGCGGCCGGCGTTGGAGAGCGGTGGCGGCGGTGGAGGCGCGCCGCCGCCGGGGAGGGCGGACGCGAGCTTCGACACCAACATGGTGATCATCCTGGCGGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTCCGGTGCGGGGGCCGGGGCGCGGCCGCCGCAGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGCGGCGGCGGCCGGGGTGGGGTGCGGCGGCATCAAGAAGCGCGCGCTGAGGAGCATCCCGGTGGAGGTGTACTGCGGCGGGGAGGAGACGGCGGAGACCGACGTGTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCCGGCACGGGTTCCACGTCCGGTGCGTCGACGCCTGGCTGGTCTCGCACGGCTCCTGCCCGACGTGCCGCCGCCAGGTGATCGGCGGCGGCGGGAGCACGCCGCCGCCGGACAGCGACACCATCGCCGTGGTCGTAGCATGATGTGAGAGACAAAAGATATACTACTCCAGTAGTCTTCGTAGCTAGCTGGGCTCCTGCCTGGCCTCTTTGGCGCCAATCCCTTCTAAAAAATATCTCGCTGATCGATCTGATCTCTCCGGATATTTTCCGGCGAACGGCTAGTGACTAGTGACTCATCAGCTTGTTGTGGCGAATGTATTGACGGGTGCCCAATTGGCCCAAATTGGTCACTGTATATACACGTTCAACATCGCCGTCCCGAAATGTACTGTACCACTA]
[+] EMBL AK111029 [TATCTACCTGGAGTTAGTGTAGGTGAGAGGTTAGGTCGATCATGGCGAGTGGTGTTGCGGCGCCGGCGCCGAGCGTGTTCGAGGCGGCGCGGCCGGCGTTGGAGAGCGGTGGCGGCGGTGGAGGCGCGCCGCCGCCGGGGAGGGCGGACGCGAGCTTCGACACCAACATGGTGATCATCCTGGCGGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTCCGGTGCGGGGGCCGGGGCGCGGCCGCCGCAGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGCGGCGGCGGCCGGGGTGGGGTGCGGCGGCATCAAGAAGCGCGCGCTGAGGAGCATCCCGGTGGAGGTGTACTGCGGCGGGGAGGAGACGGCGGAGACCGACGTGTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCCGGCACGGGTTCCACGTCCGGTGCGTCGACGCCTGGCTGGTCTCGCACGGCTCCTGCCCGACGTGCCGCCGCCAGGTGATCGGCGGCGGCGGGAGCACGCCGCCGCCGGACAGCGACACCATCGCCGTGGTCGTAGCATGATGTGAGAGACAAAAGATATACTACTCCAGTAGTCTTCGTAGCTAGCTGGGCTCCTGCCTGGCCTCTTTGGCGCCAATCCCTTCTAAAAAATATCTCGCTGATCGATCTGATCTCTCCGGATATTTTCCGGCGAACGGCTAGTGACTAGTGACTCATCAGCTTGTTGTGGCGAATGTATTGACGGGTGCCCAATTGGCCCAAATTGGTCACTGTATATACACGTTCAACATCGCCGTCCCGAAATGTACTGTACCACTA]
[+] EMBL CF325326 [ CGGCGGCGGCGGAGGAGGAGGAGGAGCGGCGGCGGCCGGGGTGGGGTGCGGCGGCATCAAGAAGCGCGCGCTGAGGAGCATCCCGGTGGAGGTGTACTGCGGCGGGGAGGAGACGGCGGAGACCGACGTGTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCCGGCACGGGTTCCACGTCCGGTGCGTCGACGCCTGGCTGGTCTCGCACGGCTCCTGCCCGACGTGCCGCCGCC ]
[+] EMBL CF325350 [ CGGCGGCGGCGGAGGAGGAGGAGGAGCGGCGGCGGCCGGGGTGGGGTGCGGCGGCATCAAGAAGCGCGCGCTGAGGAGCATCCCGGTGGAGGTGTACTGCGGCGGGGAGGAGACGGCGGAGACCGACGTGTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCCGGCACGGGTTCCACGTCCGGTGCGTCGACGCCTGGCTGGTCTCGCACGGCTCCTGCCCGACGTGCCGC ]
consensusID : consensus_7735#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[ACTTGCTGTTGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTGTGGGAAAGAGATCACAGAAGGTACTTGGCTAGCTCACTCCATCAATCGATCGATCGGTACAGTTTAGCAACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCGCTACTACGTCCACGTCCTTTTGTGTTACGGATTGGTTCGCGAGCGAGATAACTGGTGAGTAGTAGTAGCTTTTCCACTGACCTGGACCTGTACATTCGGCGCATAATTTGCCGGGAAGCTTAGCGTGTTNGTTCTAAGTCCTAGTAAGTTGGGGGGGANGCCATGGGGGGTGCACACGAAGTCCGATGAACCTGGTAATGGGGGAN]
[+] EMBL C72686 [ACTTGCTGTTGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTGTGGGAAAGAGATCACAGAAGGTACTTGGCTAGCTCACTCCATCAATCGATCGATCGGTACAGTTTAGCAACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCGCTACTACGTCCACGTCCTTTTGTGTTACGGATTGGTTCGCGAGCGAGATAACTGGTGAGTAGTAGTAGCTTTTCCACTGACCTGGACCTGTACATTCGGCGCATAATTTGCCGGGAAGCTTAGCGTGTTNGTTCTAAGTCCTAGTAAGTTGGGGGGGANGCCATGGGGGGTGCACACGAAGTCCGATGAACCTGGTAATGGGGGAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7735#0 ---------------------------CTACTACTACTACGGCTCAACTCCACTTGCTGT 33
consensus_7735#2 ---------------------------------------------------ACTTGCTGT 9
consensus_7735#1 TATCTACCTGGAGTTAGTGTAGGTGAGAGGTTAGGTCGATCATGGCGAGTGGTGTTGCGG 60
* *
consensus_7735#0 TGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTG 93
consensus_7735#2 TGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTG 69
consensus_7735#1 CGCCGGCGCCGAGCGTGTTCGAGGCGGCGCGGCCGGCGTTGGAGAGCGGTGGCGGCGGTG 120
* * * * * ** * ** * * * * ** ***
consensus_7735#0 TGGGAAAGAGATCACAGAGGGTACTTG--GCTAGCTC--ACTCCATCA-----ATCGATC 144
consensus_7735#2 TGGGAAAGAGATCACAGAAGGTACTTG--GCTAGCTC--ACTCCATCA-----ATCGATC 120
consensus_7735#1 GAGGCGCGCCGCCGCCGGGGAGGGCGGACGCGAGCTTCGACACCAACATGGTGATCATCC 180
** * * * * * * ** **** ** *** ** *** *
consensus_7735#0 GATCGGTACAGTTTAGCA-ACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCG 203
consensus_7735#2 GATCGGTACAGTTTAGCA-ACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCG 179
consensus_7735#1 TGGCGGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCG 240
*** * ** * * * * * ** * * * * *** * * **
consensus_7735#0 CTACTACGTCCACGTCCTTTTGTGTTACGGAT-TGGTTCGCGAGCGAGATAACTG-CGTG 261
consensus_7735#2 CTACTACGTCCACGTCCTTTTGTGTTACGGAT-TGGTTCGCGAGCGAGATAACTGGTGAG 238
consensus_7735#1 CGCTCCGGTGCGGGGGCCGGGGCGCGGCCGCCGCAGGCGGCGGCGGCGGCGGAGGAGGAG 300
* ** * * * * * * * * *** * * * * *
consensus_7735#0 TTGTTCTAAGTTCT--AGTAAGTTGGGGGGAGGCCATGGGGGTGCACACGAAGTCGATGA 319
consensus_7735#2 TAGTAGTAGCTTTTCCACTGACCTGGACCTGTACATTCG--GCGCATAATTTGCCGGGAA 296
consensus_7735#1 GAGGAGCGGCGGCGGCCGGGGTGGGGTGCGGCGGCATCAAGAAGCGCGCGCTGAGGAGCA 360
* ** * ** * * *
consensus_7735#0 GCT-GGTACATGGGGACGCCGGCCTCGCCGTCGCCGGGGAGCGCCG-GGGAGGCGCAGCA 377
consensus_7735#2 GCTTAGCGTGTTNGTTCTAAGTCCTAGTAAGTTGGGGGGGANGCCATGGGGGGTGCA-CA 355
consensus_7735#1 TCCCGGTGGAGGTGTACTGCGGCG-GGGAGGAGACGGCGGAGACC--GACGTGTGCGCCA 417
* * * * * * * ** * ** * * ** **
consensus_7735#0 CGCACTGAGCAGCGGCGGGGGAGGG-GGCAGCGACGCCAGCTTCGACACCAACATGGTGA 436
consensus_7735#2 CGAAGTCCGATGAACCTGGTAATGG-GGGAN----------------------------- 385
consensus_7735#1 TCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCCGGCACG 477
* * * * ** * *
consensus_7735#0 TCATCCTCGCGGCGCTGCTCTTCGCGCTGCTGTTCGCGCTCGGGCTCAACTCGCTCGCGC 496
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 GGTTCCACGTCCGGTGCGTCGACGCCTGGCTGGTCTCGCACGGCTCCTGCCCGACGTGCC 537
consensus_7735#0 GGCTCATCATCCGGTGGGCGCGGCGGGCGGCGACGGGGGAAGGCGCCGGCGGCGGCGTGG 556
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 GCCGCCAGGTGATCGGCGGCGGCGGGAGCACGCCGCCGCCGGACAGCGACACCATCGCCG 597
consensus_7735#0 AGGGGGCGGGCGCCGGCGGCGGGCTCAAAAAGCGCGCGCTCAGGAGCATCCCCATCAAGG 616
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 TGGTCGTAGCATGATGTGAGAGACAAAAGATATACTACTCCAGTAGTCTTCGTAGCTAGC 657
consensus_7735#0 TGTACGGCGGAGGTGGTGGAGGGAGCCCCGCCGCCGCGGCGGAGGTCTGCGCCATCTGCC 676
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 TGGGCTCCTGCCTGGCCTCTTTGGCGCCAATCCCTTCTAAAAAATATCTCGCTGATCGAT 717
consensus_7735#0 TCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGCTGCGGCCATGGCTTCC 736
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 CTGATCTCTCCGGATATTTTCCGGCGAACGGCTAGTGACTAGTGACTCATCAGCTTGTTG 777
consensus_7735#0 ACGTCCGCTGCGTCGACACGTGGCTCGTCTCCCACGACTCCTGCCCCACGTGCCGGGGCT 796
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 TGGCGAATGTATTGACGGGTGCCCAATTGGCCCAAATTGGTCACTGTATATACACGTTCA 837
consensus_7735#0 CCGTCCTCCACGACGCCACCACCAAGCACAAACCAACCGCCGCCGCCGCCGCCGCGGGCA 856
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 ACATCGCCGTCCCGAAATGTACTGTACCACTA---------------------------- 869
consensus_7735#0 GCCGGCGGCCGGGGAGCGAGGTCGACGCCCCCGCCGCCGCCGCCGTGACGGTGGTCATCG 916
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 ------------------------------------------------------------
consensus_7735#0 CGTGACCGGGGCAGGTGGGCCCCCGCTTCCCCCAGCCGCTGTGGGCCCAGTGTAACATAC 976
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 ------------------------------------------------------------
consensus_7735#0 CCATGTAAAAAATCTCCTTTCTTGTTTTGGACCTATGTAAAAAAATCTCTCCTTGGGCCA 1036
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 ------------------------------------------------------------
consensus_7735#0 GGCCATGGCCCATGGCCGTGAGATATTTTCCGACGTTGGTGCTGTGAGAGGATGACGGGT 1096
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 ------------------------------------------------------------
consensus_7735#0 GGGCCCGCTCGTCTGTTCAGTTTGTAGGTTACTCACAGTAGTCCACCGTCCATTCGATTT 1156
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 ------------------------------------------------------------
consensus_7735#0 CGATCTTGGCTAGCAAGGGCAGTTGTTGTGGAGGTTAGGAGGTACAGGACGCTTACAGTT 1216
consensus_7735#2 ------------------------------------------------------------
consensus_7735#1 ------------------------------------------------------------
consensus_7735#0 ACGTACAGGCTTGTAATATTACCGTATAAGTAGTATCATTTTGCGAGGAAATACCGTAT 1275
consensus_7735#2 -----------------------------------------------------------
consensus_7735#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||