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Oryza sativa
cluster # 7955 cluster # 7955       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7955#0 length = 1120 sequences # 4  
 consensus_7955#1 length = 416 sequences # 1  
consensusID : consensus_7955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1120
fasta sequence 
                              [CAAACCCCCGCGTCCGAACCACCACCTCGCCTCCTCCCCCCCTCTTCTTCCAGCCCCACCGCGCGCAGCAGCGGC-A-GACCACGGCACGGCGCCGCGCGGCCGTACCATGCCGTGACCGGCCGGAACCCACCACCGCCTCGACCGCCGCGCATATGCACCCCATGGCCGTGGCTGTGGCCGCCGCCGTCTCATGCCCGCGCCTCGTCCCCGGGCGTATCCCCCTCTCCGCCGCCTCCGTCGCCGTCGCCCGTGGCCGTGGCTGCGGGGTGGCGGTGAGGGCGCGTGGCCAAAGCGCCGCCACGCCCGACCCGGCTGCCATCCTGCGGCGGCCGGCGGTCGTGACGACGGCGGCTGCGGAGGAGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGAGCGAGGCGGAGTCCTCGCCGGGTGGTGGTTCGGGGGAGGATGAGACGCCGGAGGAGGGGAGGAGGAAGGGGACGGAGAGGGAGTGGGTGGATTGGGAGGACCTCATCCTCGAGGACACCGTGCCGCTCGTCGGCTTCGTCCGGATGATTCTGCACTCCG----GTATGAAAATGGTGATCGACTGAGCCCTGAACATGAAAAGGCAATTTTGGAACGATTGCTTCCTTATCACCCACAATATGAGAAGAAAATTGGATGCGGTATTGACTACCTTACGGTAGGGTTACATCCAGAATTTGAGAACT-CAAGATGTCTTTTCATAGTTAGGAAGGATGGTGAGCAAGTTGATTTTTCATTCTGGAAGTGCATCAAAGGTCTCATACGACAAAAGTACCCCATGTATGCAGATAGTTTCATTCTCAGACATTTTCGCAGGAGGCAAGATTACCGAATTAGTGACTCGTAAAATTATTTCTTGTAACATTTCTCTGATTTTGATTTGGCCCATTTGCCCTTAATGCCCTGTGATCTTGCATACGTTCAAGCACACGTGGAAGGTTCCCGTTCTAAGTATCTCGTTGGGCTCGATACAATTTCCTTCTCCTGTGTGTACATATAGGGTAGTCTTCCAGTTGAACTTCGCCTGACTTTGCAGCAC-GCTCATTCTTGAGAAGTTATATATGTGCTAGTTCTTGGCTGAATGTTGCAATTCAAAAAAAAA]

[+] EMBL AK067075             [CAAACCCCCGCGTCCGAACCACCACCTCGCCTCCTCCCCCCCTCTTCTTCCAGCCCCACCGCGCGCAGCAGCGGC A GACCACGGCACGGCGCCGCGCGGCCGTACCATGCCGTGACCGGCCGGAACCCACCACCGCCTCGACCGCCGCGCATATGCACCCCATGGCCGTGGCTGTGGCCGCCGCCGTCTCATGCCCGCGCCTCGTCCCCGGGCGTATCCCCCTCTCCGCCGCCTCCGTCGCCGTCGCCCGTGGCCGTGGCTGCGGGGTGGCGGTGAGGGCGCGTGGCCAAAGCGCCGCCACGCCCGACCCGGCTGCCATCCTGCGGCGGCCGGCGGTCGTGACGACGGCGGCTGCGGAGGAGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGAGCGAGGCGGAGTCCTCGCCGGGTGGTGGTTCGGGGGAGGATGAGACGCCGGAGGAGGGGAGGAGGAAGGGGACGGAGAGGGAGTGGGTGGATTGGGAGGACCTCATCCTCGAGGACACCGTGCCGCTCGTCGGCTTCGTCCGGATGATTCTGCACTCCG    GTATGAAAATGGTGATCGACTGAGCCCTGAACATGAAAAGGCAATTTTGGAACGATTGCTTCCTTATCACCCACAATATGAGAAGAAAATTGGATGCGGTATTGACTACCTTACGGTAGGGTTACATCCAGAATTTGAGAACT CAAGATGTCTTTTCATAGTTAGGAAGGATGGTGAGCAAGTTGATTTTTCATTCTGGAAGTGCATCAAAGGTCTCATACGACAAAAGTACCCCATGTATGCAGATAGTTTCATTCTCAGACATTTTCGCAGGAGGCAAGATTACCGAATTAGTGACTCGTAAAATTATTTCTTGTAACATTTCTCTGATTTTGATTTGGCCCATTTGCCCTTAATGCCCTGTGATCTTGCATACGTTCAAGCACACGTGGAAGGTTCCCGTTCTAAGTATCTCGTTGGGCTCGATACAATTTCCTTCTCCTGTGTGTACATATAGGGTAGTCTTCCAGTTGAACTTCGCCTGACTTTGCAGCAC GCTCATTCTTGAGAAGTTATATATGTGCTA                                 ]
[+] EMBL AU070232             [                                                       CCACCGCGCGCA NAGCGTCTANGACCACGGCACGGCGCCGCGCGGCCGTACCATGCCGTGACCGGCCGGAACCCACCACCGCCTCGACCGCCGCGCATATNCACCCCATGGCCGTGGCTGTNGCCGCCGCCGTCTCATGCCCGCGCNTCGTCCCCGGGCGTATCCCCCTCTCCGCCGCCTCCGTCGCCGTCGCCCGTGGCCGTGGCTGCNGGGTGGCGGTGAGGGCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB684690             [                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAGACGCCGGAGGAGGGGAGGAGGAAGGGGACGGAGAGGGAGTGGGTGGATTGGGAGGACCTCATCCTCGAGGACACCGTGCCGCTCGTCGGCTTCGTCCGGATGATTCTGCACTCCGGCAAGTATGAAAATGGTGATCGACTGAGCCCTGAACATGAAAAGGCAATTTTGGAACGATTGCTTCCTTATCACCCACAATATGAGAAGAAAATTGGATGCGGTATTGACTACCTTACGGTAGGGTTACATCCAGAATTTGAGAACT CAAGATGTCTTTTCATAGTTAGGAAGGATGGTGAGCAAGTTGATTTTTCATTCTGGAAGTGCATCAAAGGTCTCATACGACAAAAGTACCCCATGTATGCAGATAGTTTCATTTTCAGACATTTTCGCAGGAGGCAAGATTACCGAATTAGTGACTCGTAGGATTATTTCTTGTAACATTTCTCTGATTTTGATT                                                                                                                                                                                                                              ]
[+] EMBL AU173820             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATNCAGAATTTGANAACTCCAAGATGTCTTTTCATAGTTAGGAAGGATGGTGAGCAAGTTGATTTTTCATTCTGGAAGTGCATCAAAGGTCTCATACGACAAAAGTACCCCATGTATGCAGATAGTTTCATTCTCAGACATTTTCGCAGGAGGCAAGATTACCGAATTAGTGACTCGTAAAATTATTTCTTGTAACATTTCTCTGATTTTGATTTGGCCCATTTGCCCTTAATGCCCTGTGATCTTGCATACGTTCAAGCACACGTGGAAGGTTCCCGTTCTAAGTATCTCGTTGGGCTCGATACAATTTCCTTCTCCTGTGTGTACATATAGGGTAGTCTTCCAGTTGAACTTCGCCTGACTTTGCAGCACTGCTCATTCTTGAGAAGTTATATATGTGCTAGTTCTTGGCTGAATGTTGCAATTCAAAAAAAAA]




>consensus_7955#0
CAAACCCCCGCGTCCGAACCACCACCTCGCCTCCTCCCCCCCTCTTCTTCCAGCCCCACC
GCGCGCAGCAGCGGCAGACCACGGCACGGCGCCGCGCGGCCGTACCATGCCGTGACCGGC
CGGAACCCACCACCGCCTCGACCGCCGCGCATATGCACCCCATGGCCGTGGCTGTGGCCG
CCGCCGTCTCATGCCCGCGCCTCGTCCCCGGGCGTATCCCCCTCTCCGCCGCCTCCGTCG
CCGTCGCCCGTGGCCGTGGCTGCGGGGTGGCGGTGAGGGCGCGTGGCCAAAGCGCCGCCA
CGCCCGACCCGGCTGCCATCCTGCGGCGGCCGGCGGTCGTGACGACGGCGGCTGCGGAGG
AGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGAGCGAGGCGGAGTCCTCGC
CGGGTGGTGGTTCGGGGGAGGATGAGACGCCGGAGGAGGGGAGGAGGAAGGGGACGGAGA
GGGAGTGGGTGGATTGGGAGGACCTCATCCTCGAGGACACCGTGCCGCTCGTCGGCTTCG
TCCGGATGATTCTGCACTCCGGTATGAAAATGGTGATCGACTGAGCCCTGAACATGAAAA
GGCAATTTTGGAACGATTGCTTCCTTATCACCCACAATATGAGAAGAAAATTGGATGCGG
TATTGACTACCTTACGGTAGGGTTACATCCAGAATTTGAGAACTCAAGATGTCTTTTCAT
AGTTAGGAAGGATGGTGAGCAAGTTGATTTTTCATTCTGGAAGTGCATCAAAGGTCTCAT
ACGACAAAAGTACCCCATGTATGCAGATAGTTTCATTCTCAGACATTTTCGCAGGAGGCA
AGATTACCGAATTAGTGACTCGTAAAATTATTTCTTGTAACATTTCTCTGATTTTGATTT
GGCCCATTTGCCCTTAATGCCCTGTGATCTTGCATACGTTCAAGCACACGTGGAAGGTTC
CCGTTCTAAGTATCTCGTTGGGCTCGATACAATTTCCTTCTCCTGTGTGTACATATAGGG
TAGTCTTCCAGTTGAACTTCGCCTGACTTTGCAGCACGCTCATTCTTGAGAAGTTATATA
TGTGCTAGTTCTTGGCTGAATGTTGCAATTCAAAAAAAAA

consensusID : consensus_7955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence 
                              [CGCACCTCACTTCCCAGCCACTACTTGCCACCACCACCACCACCCACACCGAACTAACCTCGCCGTGGAAACCAAACCCCCGCGTCCGGATGATTCTGCACTCCGGCAAGTATGAAAATGGTGATCGACTGAGCCCTGAACATGAAAAGGCAATTTTGGAACGATTGCTTCCTTATCACCCACAATATGAGAAGAAAATTGGATGCGGTATTGACTACCTTACGGTAGGGTTACATCCAGAATTTGAGAACTCAAGATGTCTTTTCATAGTTAGGAAGGATGGTGAGCAAGTTGATTTTTCATTCTGGAAGTGCATCAAAGGTCTCATACGACAAAAGTACCCCATGTATGCAGATAGTTTCATTCTCAGACATTTTCGCAGGAGGCAAGATTACCGAATTAGTGACTCGTAAAAT]

[+] EMBL AK062805             [CGCACCTCACTTCCCAGCCACTACTTGCCACCACCACCACCACCCACACCGAACTAACCTCGCCGTGGAAACCAAACCCCCGCGTCCGGATGATTCTGCACTCCGGCAAGTATGAAAATGGTGATCGACTGAGCCCTGAACATGAAAAGGCAATTTTGGAACGATTGCTTCCTTATCACCCACAATATGAGAAGAAAATTGGATGCGGTATTGACTACCTTACGGTAGGGTTACATCCAGAATTTGAGAACTCAAGATGTCTTTTCATAGTTAGGAAGGATGGTGAGCAAGTTGATTTTTCATTCTGGAAGTGCATCAAAGGTCTCATACGACAAAAGTACCCCATGTATGCAGATAGTTTCATTCTCAGACATTTTCGCAGGAGGCAAGATTACCGAATTAGTGACTCGTAAAAT]




>consensus_7955#1
CGCACCTCACTTCCCAGCCACTACTTGCCACCACCACCACCACCCACACCGAACTAACCT
CGCCGTGGAAACCAAACCCCCGCGTCCGGATGATTCTGCACTCCGGCAAGTATGAAAATG
GTGATCGACTGAGCCCTGAACATGAAAAGGCAATTTTGGAACGATTGCTTCCTTATCACC
CACAATATGAGAAGAAAATTGGATGCGGTATTGACTACCTTACGGTAGGGTTACATCCAG
AATTTGAGAACTCAAGATGTCTTTTCATAGTTAGGAAGGATGGTGAGCAAGTTGATTTTT
CATTCTGGAAGTGCATCAAAGGTCTCATACGACAAAAGTACCCCATGTATGCAGATAGTT
TCATTCTCAGACATTTTCGCAGGAGGCAAGATTACCGAATTAGTGACTCGTAAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7955#0      CAAACCCCCGCGTCCGAACCACCACCTCGCCTCCTCCCCCCCTCTTCTTCCAGCCCCACC 60
consensus_7955#1      ------------------------------------------------------------
                                                                                  

consensus_7955#0      GCGCGCAGCAGCGGCAGACCACGGCACGGCGCCGCGCGGCCGTACCATGCCGTGACCGGC 120
consensus_7955#1      ------------------------------------------------------------
                                                                                  

consensus_7955#0      CGGAACCCACCACCGCCTCGACCGCCGCGCATATGCACCCCATGGCCGTGGCTGTGGCCG 180
consensus_7955#1      ------------------------------------------------------------
                                                                                  

consensus_7955#0      CCGCCGTCTCATGCCCGCGCCTCGTCCCCGGGCGTATCCCCCTCTCCGCCGCCTCCGTCG 240
consensus_7955#1      ------------------------------------------------------------
                                                                                  

consensus_7955#0      CCGTCGCCCGTGGCCGTGGCTGCGGGGTGGCGGTGAGGGCGCGTGGCCAAAGCGCCGCCA 300
consensus_7955#1      ------------------------------------------------------------
                                                                                  

consensus_7955#0      CGCCCGACCCGGCTGCCATCCTGCGGCGGCCGGCGGTCGTGACGACGGCGGCTGCGGAGG 360
consensus_7955#1      ------------------------------------------------------------
                                                                                  

consensus_7955#0      AGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGAGCGAGGCGGAGTCCTCGC 420
consensus_7955#1      ------------------------------------------------------------
                                                                                  

consensus_7955#0      CGGGTGGTGGTTCGGGGGAGGATGAGACGCCGGAGGAGGGGAGGAGGAAGGGGACGGAGA 480
consensus_7955#1      -------------------------CGCACCTCACTTCCCAGCCACTACTTGCCACCACC 35
                                                 * **  *          *  *   *     *  

consensus_7955#0      GGGAGTGGGTGGATTGGGAGGACCTCATCCTCGAGGACACCGTGCCGCTCGTCGGCTTCG 540
consensus_7955#1      ACCACCACCCACACCGAACTAACCTCGCCGT---GGAAACCAAACC-CCCG-------CG 84
                         *        *  *     *****  * *   *** ***   ** * **       **

consensus_7955#0      TCCGGATGATTCTGCACTCCGG----TATGAAAATGGTGATCGACTGAGCCCTGAACATG 596
consensus_7955#1      TCCGGATGATTCTGCACTCCGGCAAGTATGAAAATGGTGATCGACTGAGCCCTGAACATG 144
                      **********************    **********************************

consensus_7955#0      AAAAGGCAATTTTGGAACGATTGCTTCCTTATCACCCACAATATGAGAAGAAAATTGGAT 656
consensus_7955#1      AAAAGGCAATTTTGGAACGATTGCTTCCTTATCACCCACAATATGAGAAGAAAATTGGAT 204
                      ************************************************************

consensus_7955#0      GCGGTATTGACTACCTTACGGTAGGGTTACATCCAGAATTTGAGAACTCAAGATGTCTTT 716
consensus_7955#1      GCGGTATTGACTACCTTACGGTAGGGTTACATCCAGAATTTGAGAACTCAAGATGTCTTT 264
                      ************************************************************

consensus_7955#0      TCATAGTTAGGAAGGATGGTGAGCAAGTTGATTTTTCATTCTGGAAGTGCATCAAAGGTC 776
consensus_7955#1      TCATAGTTAGGAAGGATGGTGAGCAAGTTGATTTTTCATTCTGGAAGTGCATCAAAGGTC 324
                      ************************************************************

consensus_7955#0      TCATACGACAAAAGTACCCCATGTATGCAGATAGTTTCATTCTCAGACATTTTCGCAGGA 836
consensus_7955#1      TCATACGACAAAAGTACCCCATGTATGCAGATAGTTTCATTCTCAGACATTTTCGCAGGA 384
                      ************************************************************

consensus_7955#0      GGCAAGATTACCGAATTAGTGACTCGTAAAATTATTTCTTGTAACATTTCTCTGATTTTG 896
consensus_7955#1      GGCAAGATTACCGAATTAGTGACTCGTAAAAT---------------------------- 416
                      ********************************                            

consensus_7955#0      ATTTGGCCCATTTGCCCTTAATGCCCTGTGATCTTGCATACGTTCAAGCACACGTGGAAG 956
consensus_7955#1      ------------------------------------------------------------
                                                                                  

consensus_7955#0      GTTCCCGTTCTAAGTATCTCGTTGGGCTCGATACAATTTCCTTCTCCTGTGTGTACATAT 1016
consensus_7955#1      ------------------------------------------------------------
                                                                                  

consensus_7955#0      AGGGTAGTCTTCCAGTTGAACTTCGCCTGACTTTGCAGCACGCTCATTCTTGAGAAGTTA 1076
consensus_7955#1      ------------------------------------------------------------
                                                                                  

consensus_7955#0      TATATGTGCTAGTTCTTGGCTGAATGTTGCAATTCAAAAAAAAA 1120
consensus_7955#1      --------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)