cluster # 800

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Oryza sativa
cluster # 800 cluster # 800 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_800#0 length = 534 sequences # 1

consensus_800#1 length = 450 sequences # 1

consensusID : consensus_800#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [CAGAGAGCCTTGGTTCCATTCAGACAAAAAAGCTGACTTAGATGTTAAGTGGTGAGAATACCCATAAAGGAGCCGAATGAAATCAAAATTTCATGTTCGGTTTTGAATTAGAGACGTTAATAATAATCAACCAACGTCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGCTCCATTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGCCTGTATTCAACCTTTTTCGTCCACCGGTTTCCAGCGCTCCAGAGCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCACGGGTTCGATTCCCGTCTCCGCACTTAGCAGTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGGCTGGGTGGTTGGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAGCAGGTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCT]

[+] EMBL AK062877             [CAGAGAGCCTTGGTTCCATTCAGACAAAAAAGCTGACTTAGATGTTAAGTGGTGAGAATACCCATAAAGGAGCCGAATGAAATCAAAATTTCATGTTCGGTTTTGAATTAGAGACGTTAATAATAATCAACCAACGTCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGCTCCATTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGCCTGTATTCAACCTTTTTCGTCCACCGGTTTCCAGCGCTCCAGAGCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCACGGGTTCGATTCCCGTCTCCGCACTTAGCAGTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGGCTGGGTGGTTGGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAGCAGGTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCT]




>consensus_800#0
CAGAGAGCCTTGGTTCCATTCAGACAAAAAAGCTGACTTAGATGTTAAGTGGTGAGAATA
CCCATAAAGGAGCCGAATGAAATCAAAATTTCATGTTCGGTTTTGAATTAGAGACGTTAA
TAATAATCAACCAACGTCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGA
TTCCCGCTACCCGCTCCATTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGA
GGCCTGTATTCAACCTTTTTCGTCCACCGGTTTCCAGCGCTCCAGAGCGGAGTAGAGCAG
TTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCACGGGTTCGATTCCCGTCTCCGCACT
TAGCAGTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGGCTGGGTGGTT
GGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAGCAG
GTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCT

consensusID : consensus_800#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [TGCGGTACTCGGCGTCNATACTGGTAAAAGGCTGGGTGGTTGGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAAGCAGGTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCTTGCAAAAAAAAAAAAAAAAAAACTCNAGGTCAACGGTATCNATAAGCTTGATATCNAATTCGGCACNAGCTCGTGCCNAATTCGGCACAAGGTGCCCCCTAGGTATTCTCTACCTACCCACCTGTNTCGGTTTCGGGTACAGGTACCCCTTTGTTNAAGGTCGTNCNANCTTTNCCTGGGATTTTTTNTTGGGTTACATACTTCAGCGCCGTANCGCCTGNTNTNAGCCTCGTGGAAAACAATGGCTANTCCACGGGGCTCATACTTCANCGCTGCACGCTTGGTACTCGGACC]

[+] EMBL AA753149             [TGCGGTACTCGGCGTCNATACTGGTAAAAGGCTGGGTGGTTGGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAAGCAGGTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCTTGCAAAAAAAAAAAAAAAAAAACTCNAGGTCAACGGTATCNATAAGCTTGATATCNAATTCGGCACNAGCTCGTGCCNAATTCGGCACAAGGTGCCCCCTAGGTATTCTCTACCTACCCACCTGTNTCGGTTTCGGGTACAGGTACCCCTTTGTTNAAGGTCGTNCNANCTTTNCCTGGGATTTTTTNTTGGGTTACATACTTCAGCGCCGTANCGCCTGNTNTNAGCCTCGTGGAAAACAATGGCTANTCCACGGGGCTCATACTTCANCGCTGCACGCTTGGTACTCGGACC]




>consensus_800#1
TGCGGTACTCGGCGTCNATACTGGTAAAAGGCTGGGTGGTTGGGCGGTATCCAACCCTTT
TTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAAGCAGGTTGCGAAGTAACTTGCT
ACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCTTGCAAAAAAAAAAAAAAAAAAACT
CNAGGTCAACGGTATCNATAAGCTTGATATCNAATTCGGCACNAGCTCGTGCCNAATTCG
GCACAAGGTGCCCCCTAGGTATTCTCTACCTACCCACCTGTNTCGGTTTCGGGTACAGGT
ACCCCTTTGTTNAAGGTCGTNCNANCTTTNCCTGGGATTTTTTNTTGGGTTACATACTTC
AGCGCCGTANCGCCTGNTNTNAGCCTCGTGGAAAACAATGGCTANTCCACGGGGCTCATA
CTTCANCGCTGCACGCTTGGTACTCGGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_800#0      CAGAGAGCCTTGGTTCCATTCAGACAAAAAAGCTGACTTAGATGTTAAGTGGTGAGAATA 60
consensus_800#1      ------------------------------TGCGGTACTCGGCGTCNA-TACTGGTAAAA 29
                                                    ** *   * *  **  * *  **  ** *

consensus_800#0      CCCATAAAGGAGCCGAATGAAATCAAAATTTCATGTTCGGTTTTGAATTAGAGACGTTAA 120
consensus_800#1      GGCT--GGGTGGTTGGGCGGTATCCAA---CCCTTTTTATTCATTAGTTCCCGACCCTA- 83
                       *     *  *  *   *  *** **    * * **   *  * * **   ***  ** 

consensus_800#0      TAATAATCAACCAACGTCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGA 180
consensus_800#1      TAAGGCCAAATTGAAGCAGGTTGCGAA--GTAACTTGCTACCACAA-GAGGAACTCTCAA 140
                     ***     **   * *  *  *   *    ** * * * *    ** ** *     ** *

consensus_800#0      TTCCCGCTACCCGCTCCATTCTGTATAAAATAACTATTCTATTTGTCTA-GACATGGTAG 239
consensus_800#1      GGCCCCCTCCCTACCTTGCAAAAAAAAAAAAAAAAAAACTCNAGGTCAACGGTATCNATA 200
                       *** ** **  *          * **** **  *  **    *** * *  **     

consensus_800#0      AGGCCTGTATTCAACCTTTTTCGTCCACCGGTTTCCAGCGCTCCAGAGCGGAGTAGAGCA 299
consensus_800#1      AGCTTGATATCNAA--TTCGGCACNAGCTCGTGCCNAA---TTCGGCACAAGGT---GCC 252
                     **     ***  **  **   *     *  **  * *    * * *  *   **   ** 

consensus_800#0      GTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCACGGGTTCGATTCCCGTCTCCGCAC 359
consensus_800#1      CCCTAGGTATTCTCTAC-CTACCCACCT----GTNTCGGTTTCGGGTACAGGTACCCC-- 305
                        * *    ** * *  **    ****    **  *** ****  * * *   ** *  

consensus_800#0      TTAGCAGTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGGCTGGGTGGT 419
consensus_800#1      -------TTTGTTNAAGGTCGTNCNANCTTTNCCTGGGATTTTTTNTTGGGTTACATACT 358
                            * ***  **  *          **      **  *  *   *** *   *  *

consensus_800#0      TGGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAGCA 479
consensus_800#1      TCAGCGCCGTANCGCCTGNTNTN------AGCCTCGTGGAAAACAATGGCTANTCCACGG 412
                     *  ***   *    **   * *       **   *       * ** * * * *  *   

consensus_800#0      GGTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCT 534
consensus_800#1      GGCT----CATACTTCANCGCTGCACGCTTGGTACTCGGACC------------- 450
                     ** *      **  *     *  ** *       ***    *