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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1067 fasta sequence
[GATGCCTCCTGTCCAATCCCCCCATCCCATTCGGTAGTTGGATTGAAGACTACCGAATAAGAGAAGCAGGCAGGCAGACAAACCCTTGAACCAAGGAGTCCTCGCTGAGGAAGCTTTGGATCCACGACGCAGCTATGGCCTCCCCGCCCACCAGGCCGCGCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCCAATACCAATAGGGAGCAATCAGCTGCTCCTCGACGGCGAGGGAGATGTCGTCGGCCGCGGGCCAAGACAACGGAGATACCGCTGGGGACTACATCAAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGGGGTGTGGAT-CCCACTATTCGAGCTGAAGTTTGGGAAT-TTCTTCTTGGCTGCTATG-CCTTGAGTAGTACCTCAGAGTATAGGAGGAAACTAAGAGCTGTTAGAAGGGAAA-AATATCAAATT-TTAGTTAG-A-CAGTG-CCAGA-GC-AT-GCACCCAAGCATTGGTACAGGTGA-GCTTGCTTACGCTGTTGGATCAAAGCTAATGGATGTCAGGACTAT-GTCAAAAGAAACCCACATTGCAGAAGAAGTTAGCACAA-GTCAAC-AAACTTCACAAAATACA-GCTGGCAGTTTAGTAGAAGATTCAGATTATGGCCCCGGTGGTGCACAGCAGTCACAAAAAAGGGAAAGCTGTAGTAAATCAGCTGAACTAGTTGGTTTCAACGTACATAATGATACCTCTCTTTATGATTCTTCCAATTTTATTGTGTCTTCTACAGAAGTGAATAATTGCTCAAAAGATTCTCAGGATTTACATGACATGGGTGAACCA-AGATATGACCCTGAGACCAAAAAAAAAA]
[+] EMBL CB640211 [GATGCCTCCTGTCCAATCCCCCCATCCCATTCGGTAGTTGGATTGAAGACTACCGAATAAGAGAAGCAGGCAGGCAGACAAACCCTTGAACCAAGGAGTCCTCGCTGAGGAAGCTTTGGATCCACGACGCAGCTATGGCCTCCCCGCCCACCAGGCCGCGCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCCAATACCAATAGGGAGCAATCAGCTGCTCCTCGACGGCGAGGGAGATGTCGTCGGCCGCGGGCCAAGACAACGGAGATACCGCTGGGGACTACATCAAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGGGGAGCAAAATGCTCAAACCGGAAAAATGGC ]
[+] EMBL CB640244 [ tgTGAGGCAACTCTGGATCCACGACGCAGATATGGGCTCCCCGCCCACCAGGCCG GCAGGCACAACCAACTGACTAGGTACGCTTCCTATGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCCAATACCAATAGGGAGCAATCAGCTGCTCCTCGACGGCGAGGGAGATGTCGTCGGCCGCGGGCCAAGACAACGGAGATACCGCTGGGGACTACATCAAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAG ]
[+] EMBL CB671731 [ CCAATACCAATAGGGAGCAATCAGCTGCTCCTCGACGGCGAGGGAGATGTCGTCGGCCGCGGGCCAAGACAACGGAGATACCGCTGGGGACTACATCAAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGGGGTGTGGAT CCCACTATTCGAGCTGAAGTTTGGGAAT TTCTTCTTGGCTGCTATG CCTTGAGTAGTACCTCAGAGTATAGGAGGAAACTAAGAGCTGTTAGAAGGGAAA AATATCAAATT TTAGTTAG A CAGTG CCAGA GC AT GCACCCAAGCATTGGTACAGGTGA GCTTGCTTACGCTGTTGGATCAAAGCTAATGGATGTCAGGACTAT GTCAAAAGAAACCCACATTGCAGAAGAAGTTAGCACAA GTCAAC AAACTTCACAAAATACA GCTGGCAGTTTAGTAGAAGATTCAGATTATGGCCCCGGTGGTGCACAGCAGTCACAAAAAAGGGAAAGCTGTAGTAAATCAGCTGAACTAGTTGGTTTCAACGTACATAATGATACCTCTCTTTATGATTCTTCCAATTTTATTGTGTCTTCTACAGAAGTGAATAATTGCTCAAAAGATTCTCAGGATTTACATGACATGGGTGAACCA AGA ]
[+] EMBL BI801861 [ TTA GGGGT TGGATCCCCACTATTCGAGCTGAAGTTTGGGAATGTTCTTCTT GCTGCTATGCCCTTGAGTAGTACCTCAGAGTATAGGAGGAAACTAAGAGCTGTTAGAAGGGAAACAATATCAAATTGTTAGTTAGCACCAGTGCCCAGACGCAATGGCACCCAAGCATTGGTACAGGTGACGCTTGCTTACGCTGTTGGATCAAAGCTAATGGATGTCAGGACTATGGTCCAAAGAAACCCACATTGCAGAAGAAGTTAGCACAACGTCAACTAAACTTCAC AAATACACGCTGGCAGTTTAGTAGAAGATTCAGATTATGGCCCCGGTGGTGCACAGCAGTCAC AAAACGGGAAAGCTGTAGTAAATCAGCTGAACTAGTTGGTTTCAACGTACATAATGATACCTCTCTTTATGATTCTTCCAATTTTATTGTGTCTTCTACAGAAGTGAATAATTGCTCAAAAGATTCTCAGGATTACCATGACATGGGTGAACCACAGATATGACCCTGAGACCAAAAAAAAAA]
consensusID : consensus_8006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[GCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTCGCATGCATCATCAGATTTCAATCTCCCTGCGTTCCCTGTCCCTAATCCCATACCGATAGGGAGCAATCAGCTGCTCCTCTACGGCGAGGGAGATGTCCCCCGCCGCGGGCCAAGACAACGGACATACCGCTGGGGACTACATCCAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGGTAAGGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGCTTTGATAATGATGGAAAGGTCATATGTTTC]
[+] EMBL CB681515 [GCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTCGCATGCATCATCAGATTTCAATCTCCCTGCGTTCCCTGTCCCTAATCCCATACCGATAGGGAGCAATCAGCTGCTCCTCTACGGCGAGGGAGATGTCCCCCGCCGCGGGCCAAGACAACGGACATACCGCTGGGGACTACATCCAGTGGATGTGCGGCGCCGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGGTAAGGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGCTTTGATAATGATGGAAAGGTCATATGTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8006#0 GATGCCTCCTGTCCAATCCCCCCATCCCATTCGGTAGTTGGATTGAAGACTACCGAATAA 60
consensus_8006#1 ------------------------------------------------------------
consensus_8006#0 GAGAAGCAGGCAGGCAGACAAACCCTTGAACCAAGGAGTCCTCGCTGAGGAAGCTTTGGA 120
consensus_8006#1 ------------------------------------------------------------
consensus_8006#0 TCCACGACGCAGCTATGGCCTCCCCGCCCACCAGGCCGCGCAGCCACAACCAGCTGACTA 180
consensus_8006#1 -------------------------GCCCACCAGGCCGC-CAGCCACAACCAGCTGACTA 34
************** ********************
consensus_8006#0 GGTAGGCTTCCTAGGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCT 240
consensus_8006#1 GGT-------------CGCATGCATCATCAGATTTCAATCTCCCTGCGTTCCCTGTCCCT 81
*** ***************************** **************
consensus_8006#0 AATCCAATACCAATAGGGAGCAATCAGCTGCTCCTCGACGGCGAGGGAGATGTCGTCGGC 300
consensus_8006#1 AATCCCATACCGATAGGGAGCAATCAGCTGCTCCTCTACGGCGAGGGAGATGTCCCCCGC 141
***** ***** ************************ ***************** * **
consensus_8006#0 CGCGGGCCAAGACAACGGAGATACCGCTGGGGACTACATCAAGTGGATGTGCGGCGCCGG 360
consensus_8006#1 CGCGGGCCAAGACAACGGACATACCGCTGGGGACTACATCCAGTGGATGTGCGGCGCCGG 201
******************* ******************** *******************
consensus_8006#0 TGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGA 420
consensus_8006#1 TGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGA 261
************************************************************
consensus_8006#0 CATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGGGGAGCAAAATGCTCAAACCGGA 480
consensus_8006#1 CATTGGCGACCCCTGCCTCAACCCATCCCCCGGTAAGGGGAGCAAAATGCTCAAACCGGA 321
******************************** ***************************
consensus_8006#0 AAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAA 540
consensus_8006#1 AAAATGGCACACATGCTTTGATAATGATGGAAAGGTCATATGTTTC-------------- 367
*************** ************************ *****
consensus_8006#0 ATTCATTGTCTTAGGGGGTGTGGATCCCACTATTCGAGCTGAAGTTTGGGAATTTCTTCT 600
consensus_8006#1 ------------------------------------------------------------
consensus_8006#0 TGGCTGCTATGCCTTGAGTAGTACCTCAGAGTATAGGAGGAAACTAAGAGCTGTTAGAAG 660
consensus_8006#1 ------------------------------------------------------------
consensus_8006#0 GGAAAAATATCAAATTTTAGTTAGACAGTGCCAGAGCATGCACCCAAGCATTGGTACAGG 720
consensus_8006#1 ------------------------------------------------------------
consensus_8006#0 TGAGCTTGCTTACGCTGTTGGATCAAAGCTAATGGATGTCAGGACTATGTCAAAAGAAAC 780
consensus_8006#1 ------------------------------------------------------------
consensus_8006#0 CCACATTGCAGAAGAAGTTAGCACAAGTCAACAAACTTCACAAAATACAGCTGGCAGTTT 840
consensus_8006#1 ------------------------------------------------------------
consensus_8006#0 AGTAGAAGATTCAGATTATGGCCCCGGTGGTGCACAGCAGTCACAAAAAAGGGAAAGCTG 900
consensus_8006#1 ------------------------------------------------------------
consensus_8006#0 TAGTAAATCAGCTGAACTAGTTGGTTTCAACGTACATAATGATACCTCTCTTTATGATTC 960
consensus_8006#1 ------------------------------------------------------------
consensus_8006#0 TTCCAATTTTATTGTGTCTTCTACAGAAGTGAATAATTGCTCAAAAGATTCTCAGGATTT 1020
consensus_8006#1 ------------------------------------------------------------
consensus_8006#0 ACATGACATGGGTGAACCAAGATATGACCCTGAGACCAAAAAAAAAA 1067
consensus_8006#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||