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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1490 fasta sequence
[CCTGCTGCGATATCTATCGCACCAGGAAGGATCCTTCCGAGGAGGAAAGGCAAACGGCGGGACGCTTGAGCCAACACACACCATTGACAAAAACATTAATTAGATCGTGATAGAGGAATATAACAATCACAGAAGCCATGGCAAGCAGCGGCAAGGAGCACCGGCGAGGTGTTCCACGCCCACCGCCGTTGTCGCTCTACATCGAGAGGGAGCAAGGTGAGGTCATCATGGCTGGTCAGGCGCTGGCGACGACGAGGATGCTCCAGCAGGTCGCCACCAGCAGCAGTGGCAAGAAGAGGATACTGTCCAAGCAGCTGTCCATGAAGGAGACAACCCGGGAGGTCAAGTGGGAGAAGCGGCGCAGGCAGATACACCGGCAGAGGAGCAGCATGGCCCTTCAGGATG-TTGA-GG-AAGAAGCGAGTTCCAACATGTTCGCCGGCACCACTGACAGCGAAATGGGCTTCAGCACCGAG-CGGG-TCCCCAANAGGNTTACCGTTGGAGACCTCGATGAGCTGAGGGGATCCATGGAGCTTGGCTTTGGATTCGACGAGGAGAATGGTGGGCAGAACCTCTGTGACACGCTCCCTGCCCTCGACCTCTACTTCGCCGTCAACCGGCAGCTCTCGGAGCCCAAGATGCGTTTGTCCACTAGCTCCTTGCCATCACCGACATCAGCGACGTCGTCCTCCTCTACCCTCGGTGGCACATCGAACCCGGGTAGCCCCGTCGCACCTTCTTCTTTCATGGACTCGTGGAAGATTTGCAGTCCAGGTGACAACCCTCAGCTTGTGAAGACAAGGCTTAGGCACTGGGCTCAAGTAGTGGCCTGTTCAGTGAAACACTCCAGCTGATCAGTGCTGTAACAACCATATTCTCCTCCCAAAAGCCATTAACAATACAATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCATATCCCTGCATGCATTGGTTAGATGGCGAAGGATGAGAAAATTAAACTTCGATGGTATAAACTGAACGTAACCTTTTTTCCCTCTGATGATGACGCCCATGGTTGTGTTTGTATATATACAGATTTTAGTATACAAATATGTATGTGTTGGCAAACATTAATGTTCTACATATTGCATATATGTGTCCTGGTTTTGCAAGAATATTTTTCATGCCAATTAATCTCTGGCCGATCTCTAATTGATACAAATACAGCCTTCACTAACATAACATGTTGGTTGATTTCAGTAAAACCATATGGAACAGAACTACAGTTACAGAAACAGAAACCAGAGACTATCTTAGTTGTACCAGAGTCACAAATGATTCTATGAGGACTTCATAGAGGTAGAGTGTGCGTGTGTATTCATAGGAATGAGTGTGAGCGCATTGTGAGCGCCTGTGTTTGTATTTTACTTATAAAAAAAATTGCTCCAAAATGCATATACATTTTATGTTAATATACTTGGTGAGCTTTGCCACAAGA]
[+] EMBL C72599 [CCTGCTGCGATATCTATCGCACCAGGAAGGATCCTTCCGAGGAGGAAAGGCAAACGGCGGGACGCTTGAGCCAACACACACCATTGACAAAAACATTAATTAGATCGTGATAGAGGAATATAACAATCACAGAAGCCATGGCAAGCAGCGGCAAGGAGCACCGGCGAGGTGTTCCACGCCCACCGCCGTTGTCGCTCTACATCGAGAGGGAGCAAGGTGAGGTCATCATGGCTGGTCAGGCGCTGGCGACGACGAGGATGCTCCAGCAGGTCGCCACCAGCAGCAGTGGCAAGAAGAGGATACTGTCCAAGCAGCTGTCCATGAAGGAGACAACCCGGGAGGTCAAGTGGGAGAAGCGGCGCAGGCAGATACACCGGCAGAGGAGCAGCATTGCCCTTCAGGATG TTTAGGG AGGAAGCGAGTTCC ACATGTTTGCC GCACCA TTTCAGCGAA ]
[+] EMBL C71956 [ GACGCTTGAGCCAACACACACCATTGACAAAAACATTAATTAGATCGTNATAGAGGAATATAACANTCACAGAAGCCATGGCAAGCAGCGGCAAGGAGCACCGGCGAGGTGTTCCACGCCCACCGCCGTTNTCGCTCTACATCGAGAGGGAGCAAGGTGAGGTCATCATGGCTGGTCAGGCGCTGGCGACGACGAGGATGCTCCAGCAGGTCGCCACCAGCAGCAGTGGCAAGAAGAGGATACTGTCCAAGCAGCTGTCCATGAAGGAGACAACCCGGGAGGTCAAGTGGGAGAAGCGGCGCAGGCAGATACACCGGCAGAGGAGCAGCATGGCCCTTCAGGATGTTTGA GGAAAGAAGCGAGTTCCAACATGTTCGCCGGCACCACTGACAGCGAAATGGGCTTCAGCACCGAGCCGGGTTCCCCAANAGGNTTACCGTT ]
[+] EMBL AK105498 [ GTGATAGAGGAATATAACAATCACAGAAGCCATGGCAAGCAGCGGCAAGGAGCACCGGCGAGGTGTTCCACGCCCACCGCCGTTGTCGCTCTACATCGAGAGGGAGCAAGGTGAGGTCATCATGGCTGGTCAGGCGCTGGCGACGACGAGGATGCTCCAGCAGGTCGCCACCAGCAGCAGTGGCAAGAAGAGGATACTGTCCAAGCAGCTGTCCATGAAGGAGACAACCCGGGAGGTCAAGTGGGAGAAGCGGCGCAGGCAGATACACCGGCAGAGGAGCAGCATGGCCCTTCAGGATG TTGA GG AAGAAGCGAGTGCCAACATGTTCGCCGCCACCACTGACAGCGAAATGGGCTCCAGCACCGAG CGGG TGCCCAAGAGGCTGACCGATGGAGACCTCGATGAGCTGAGGGGATCCATGGAGCTTGGCTTTGGATTCGACGAGGAGAATGGTGGGCAGAACCTCTGTGACACGCTCCCTGCCCTCGACCTCTACTTCGCCGTCAACCGGCAGCTCTCGGAGCCCAAGATGCGTTTGTCCACTAGCTCCTTGCCATCACCGACATCAGCGACGTCGTCCTCCTCTACCCTCGGTGGCACATCGAACCCGGGTAGCCCCGTCGCACCTTCTTCTTTCATGGACTCGTGGAAGATTTGCAGTCCAGGTGACAACCCTCAGCTTGTGAAGACAAGGCTTAGGCACTGGGCTCAAGTAGTGGCCTGTTCAGTGAAACACTCCAGCTGATCAGTGCTGTAACAACCATATTCTCCTCCCAAAAGCCATTAACAATACAATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCATATCCCTGCATGCATTGGTTAGATGGCGAAGGATGAGAAAATTAAACTTCGATGGTATAAACTGAACGTAACCTTTTTTCCCTCTGATGATGACGCCCATGGTTGTGTTTGTATATATACAGATTTTAGTATACAAATATGTATGTGTTGGCAAACATTAATGTTCTACATATTGCATATATGTGTCCTGGTTTTGCAAGAATATTTTTCATGCCAATTAATCTCTGGCCGATCTCTAATTGATACAAATACAGCCTTCACTAACATAACATGTTGGTTGATTTCAGTAAAACCATATGGAACAGAACTACAGTTACAGAAACAGAAACCAGAGACTATCTTAGTTGTACCAGAGTCACAAATGATTCTATGAGGACTTCATAGAGGTAGAGTGTGCGTGTGTATTCATAGGAATGAGTGTGAGCGCATTGTGAGCGCCTGTGTTTGTATTTTACTTATAAAAAAAATTGCTCCAAAATGCATATACATTTTATGTTAATATACTTGGTGAGCTTTGCCACAAGA]
[+] EMBL AU101065 [ GTCGTCCTCCTCTACCCTCGGTGGCACATCGAACCCGGGTAGCCCCGTCGCACCTTCTTCTTTCATGGACTCGTGGAAGATTTGCAGTCCAGGTGACACCCCTCAGCTTGTGAAGACAAGGCTTAGGCACTGGGCTCAAGTAGTGGCCTGTTCAGTGAAACACTCCAGCTGATCAGTGCTGTAACAACCATATTCTCCTCCNNAAAGCCATTAACAATACAATGTT TATATATATATATATATATATATATATATATATATATATATATATATATATATATGCATATCCCTGCATGCATTGGTTAGATGGCGAAGGATGAGAAAATTAAACTTCGATGGTATAAACTGAACGTAACCTTTTTTCCCTCTGATGATGACGCCCATGGTTGTGTTTGTATATATACAGATTTTAGTATACAAATATGTATGTGTTGGCAAACATTAATGTTCTAaaaa ]
consensusID : consensus_8023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[AGCTGACCGATGGAGACTCGATGAGCTGAGGGGATCCATGGAGCTTGGCTTTGATTCGACGAGGAGAATGGTGGCAGAACCTCTGTGACACGCTCCCCGCCCTCGACCTCTACTTCGCCGTCAACCGCAGCTCTCGGAGCCCAAGATGCGTTTGTCCACTAGCTCCTTGCCATCACCGACATCAGCGACGTCGTCCTCCTCTACCCTCGGTGGCACATCGAACCCGGGTAGCCCCGTCGCACCTTCTTCTTTCATGGACTCGTGGAAGATTTGCAGTCCAGGTGACACCCTCAGCTTGTGAAGACAAGGCTTAGGCACTGGGCTCAAGTAGTGGCCTGTTCAGTGAAACACTCCAGCTGATCAGTGCTGTAACCACCATATTCTCCTCCCAAAGCCATTAACAATACAATGTTTATATATATATATATGCACATCCCTGCATGCATTGGTTAGATGGCGAAGGATGAGAAAATTAAACTTCGATGGTATAAACTGAACGTAACCTTTTTTCCCTCTGATGATGCACGCCCATGGTTGTGTTTGTAAAAAAAAAA]
[+] EMBL BM038936 [AGCTGACCGATGGAGACTCGATGAGCTGAGGGGATCCATGGAGCTTGGCTTTGATTCGACGAGGAGAATGGTGGCAGAACCTCTGTGACACGCTCCCCGCCCTCGACCTCTACTTCGCCGTCAACCGCAGCTCTCGGAGCCCAAGATGCGTTTGTCCACTAGCTCCTTGCCATCACCGACATCAGCGACGTCGTCCTCCTCTACCCTCGGTGGCACATCGAACCCGGGTAGCCCCGTCGCACCTTCTTCTTTCATGGACTCGTGGAAGATTTGCAGTCCAGGTGACACCCTCAGCTTGTGAAGACAAGGCTTAGGCACTGGGCTCAAGTAGTGGCCTGTTCAGTGAAACACTCCAGCTGATCAGTGCTGTAACCACCATATTCTCCTCCCAAAGCCATTAACAATACAATGTTTATATATATATATATGCACATCCCTGCATGCATTGGTTAGATGGCGAAGGATGAGAAAATTAAACTTCGATGGTATAAACTGAACGTAACCTTTTTTCCCTCTGATGATGCACGCCCATGGTTGTGTTTGTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8023#0 CCTGCTGCGATATCTATCGCACCAGGAAGGATCCTTCCGAGGAGGAAAGGCAAACGGCGG 60
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 GACGCTTGAGCCAACACACACCATTGACAAAAACATTAATTAGATCGTGATAGAGGAATA 120
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 TAACAATCACAGAAGCCATGGCAAGCAGCGGCAAGGAGCACCGGCGAGGTGTTCCACGCC 180
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 CACCGCCGTTGTCGCTCTACATCGAGAGGGAGCAAGGTGAGGTCATCATGGCTGGTCAGG 240
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 CGCTGGCGACGACGAGGATGCTCCAGCAGGTCGCCACCAGCAGCAGTGGCAAGAAGAGGA 300
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 TACTGTCCAAGCAGCTGTCCATGAAGGAGACAACCCGGGAGGTCAAGTGGGAGAAGCGGC 360
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 GCAGGCAGATACACCGGCAGAGGAGCAGCATGGCCCTTCAGGATGTTGAGGAAGAAGCGA 420
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 GTTCCAACATGTTCGCCGGCACCACTGACAGCGAAATGGGCTTCAGCACCGAGCGGGTCC 480
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 CCAANAGGNTTACCGTTGGAGACCTCGATGAGCTGAGGGGATCCATGGAGCTTGGCTTTG 540
consensus_8023#1 ------AGCTGACCGATGGAGAC-TCGATGAGCTGAGGGGATCCATGGAGCTTGGCTTTG 53
* * **** ******* ************************************
consensus_8023#0 GATTCGACGAGGAGAATGGTGGGCAGAACCTCTGTGACACGCTCCCTGCCCTCGACCTCT 600
consensus_8023#1 -ATTCGACGAGGAGAATGGTGG-CAGAACCTCTGTGACACGCTCCCCGCCCTCGACCTCT 111
********************* *********************** *************
consensus_8023#0 ACTTCGCCGTCAACCGGCAGCTCTCGGAGCCCAAGATGCGTTTGTCCACTAGCTCCTTGC 660
consensus_8023#1 ACTTCGCCGTCAACCG-CAGCTCTCGGAGCCCAAGATGCGTTTGTCCACTAGCTCCTTGC 170
**************** *******************************************
consensus_8023#0 CATCACCGACATCAGCGACGTCGTCCTCCTCTACCCTCGGTGGCACATCGAACCCGGGTA 720
consensus_8023#1 CATCACCGACATCAGCGACGTCGTCCTCCTCTACCCTCGGTGGCACATCGAACCCGGGTA 230
************************************************************
consensus_8023#0 GCCCCGTCGCACCTTCTTCTTTCATGGACTCGTGGAAGATTTGCAGTCCAGGTGACAACC 780
consensus_8023#1 GCCCCGTCGCACCTTCTTCTTTCATGGACTCGTGGAAGATTTGCAGTCCAGGTGACA-CC 289
********************************************************* **
consensus_8023#0 CTCAGCTTGTGAAGACAAGGCTTAGGCACTGGGCTCAAGTAGTGGCCTGTTCAGTGAAAC 840
consensus_8023#1 CTCAGCTTGTGAAGACAAGGCTTAGGCACTGGGCTCAAGTAGTGGCCTGTTCAGTGAAAC 349
************************************************************
consensus_8023#0 ACTCCAGCTGATCAGTGCTGTAACAACCATATTCTCCTCCCAAAAGCCATTAACAATACA 900
consensus_8023#1 ACTCCAGCTGATCAGTGCTGTAACCACCATATTCTCCTCCCAAA-GCCATTAACAATACA 408
************************ ******************* ***************
consensus_8023#0 ATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATAT 960
consensus_8023#1 ATGTTTATATATATATATAT---------------------------------------- 428
********************
consensus_8023#0 ATGCATATCCCTGCATGCATTGGTTAGATGGCGAAGGATGAGAAAATTAAACTTCGATGG 1020
consensus_8023#1 --GCACATCCCTGCATGCATTGGTTAGATGGCGAAGGATGAGAAAATTAAACTTCGATGG 486
*** ******************************************************
consensus_8023#0 TATAAACTGAACGTAACCTTTTTTCCCTCTGATGATG-ACGCCCATGGTTGTGTTTGTAT 1079
consensus_8023#1 TATAAACTGAACGTAACCTTTTTTCCCTCTGATGATGCACGCCCATGGTTGTGTTTGTAA 546
************************************* *********************
consensus_8023#0 ATATACAGATTTTAGTATACAAATATGTATGTGTTGGCAAACATTAATGTTCTACATATT 1139
consensus_8023#1 AAAAAAAA---------------------------------------------------- 554
* * * *
consensus_8023#0 GCATATATGTGTCCTGGTTTTGCAAGAATATTTTTCATGCCAATTAATCTCTGGCCGATC 1199
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 TCTAATTGATACAAATACAGCCTTCACTAACATAACATGTTGGTTGATTTCAGTAAAACC 1259
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 ATATGGAACAGAACTACAGTTACAGAAACAGAAACCAGAGACTATCTTAGTTGTACCAGA 1319
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 GTCACAAATGATTCTATGAGGACTTCATAGAGGTAGAGTGTGCGTGTGTATTCATAGGAA 1379
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 TGAGTGTGAGCGCATTGTGAGCGCCTGTGTTTGTATTTTACTTATAAAAAAAATTGCTCC 1439
consensus_8023#1 ------------------------------------------------------------
consensus_8023#0 AAAATGCATATACATTTTATGTTAATATACTTGGTGAGCTTTGCCACAAGA 1490
consensus_8023#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||