cluster # 8072

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8072 cluster # 8072 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8072#0 length = 869 sequences # 3

consensus_8072#1 length = 148 sequences # 1
consensus_8072#2 length = 138 sequences # 1

consensusID : consensus_8072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 869
fasta sequence

                              [ACACGCCCCCGTCTTTTCCCAAAGACGCGAGCTCGCCGCTGCGCAGCATCCAGATTCCAGATAGTACTATTGGCAAAGCACAGGTTTGGGGCGCCATGGGCTCCTACCACTACACCTCCACCTCCCACTTCTTCTTCGCCGGCGGCGGCGAGGGGGAGTACTCCAGCTACAAGGGTACTGGTAGCACCGACACCCACAGGCCCACCACCGTGCGGATCCCGGTTACCACCCCGGGCCCGGAGCGGCCGCCGGACGACGCGGCGGCGGCCAGGATCCAGGCCGCGTTCCGGGGGCACCTGGTGAGGAGGCACGCCGCGGCCGTCCGCGGCGCCGACGACGAGGCGACGCGGCTGGAGCGGCTGCTCCGGAGGCAGGAGACAGTGGACGCCGTCCGCGGCGACGAGCGCGAGCGGGCGCGGTTCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGGTACTACCCGGCCGTGCGGGAGGCGCGCCGCGCCGTGACCCGCCGCGTGGTGGGGCTGCAGGAGGTGTTCGACGCCGTGCTCGCCGCGCCCGACGCCGCCGACACGTGCGGGGTCCCCGCCAGCCTGGATCAGGTCCTCGAGGGGATCTGGGGAGAGTCGCCGGCTGCGCCGCCACCGCCGCCGCCGCCGCCGCCGCCAGCGGCGGTGGAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGCTGGAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGCGTATGCAACCGAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTACCTATAAAGTATTAAAGTGGTGTAGTATAATGCTATGAACAATCACGTAACATAGTAA]

[+] EMBL AK119930             [ACACGCCCCCGTCTTTTCCCAAAGACGCGAGCTCGCCGCTGCGCAGCATCCAGATTCCAGATAGTACTATTGGCAAAGCACAGGTTTGGGGCGCCATGGGCTCCTACCACTACACCTCCACCTCCCACTTCTTCTTCGCCGGCGGCGGCGAGGGGGAGTACTCCAGCTACAAGGGTACTGGTAGCACCGACACCCACAGGCCCACCACCGTGCGGATCCCGGTTACCACCCCGGGCCCGGAGCGGCCGCCGGACGACGCGGCGGCGGCCAGGATCCAGGCCGCGTTCCGGGGGCACCTGGTGAGGAGGCACGCCGCGGCCGTCCGCGGCGCCGACGACGAGGCGACGCGGCTGGAGCGGCTGCTCCGGAGGCAGGAGACAGTGGACGCCGTCCGCGGCGACGAGCGCGAGCGGGCGCGGTTCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGGTACTACCCGGCCGTGCGGGAGGCGCGCCGCGCCGTGACCCGCCGCGTGGTGGGGCTGCAGGAGGTGTTCGACGCCGTGCTCGCCGCGCCCGACGCCGCCGACACGTGCGGGGTCCCCGCCAGCCTGGATCAGGTCCTCGAGGGGATCTGGGGAGAGTCGCCGGCTGCGCCGCCACCGCCGCCGCCGCCGCCGCCGCCAGCGGCGGTGGAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGCTGGAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGCGTATGCAACCGAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTACCTATAAAGTATTAAAGTGGTGTAGTATAATGCTATGAACAATCACGTAACATAGTAA]
[+] EMBL AU101344             [                                                                                                                                                                                                                                                                 cttnCGGCGGCCAGGATCCAGGCCGCGTTCCGGGGGCACCTGGTGAGGAGGCACGCCGCGGCCGTCCGCGGCGCCGACGACGAGGCGACGCGGCTGGAGCGGCTGCTCCGGAGGCAGGAGACAGTGGACGCCGTCCGCGGCGACGAGCGCGAGCGGGCGCGGTTCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGGTACTACCCGGCCGTGCGGGAGGCGCGCCGCGCCGTGACCCGCCGCGTGGTGGGGCTGCAGGAGGTGTTCGACGCCGTGCTCGCCGCGCCCGACGCCGTCGACACGTGCGGGGTCCCCGCCAGCCTGGATCAGGTCCTCGAGGGGATCTGGGGAGAGTCGCCGGCTGCGCCGCCACCGNCGCCGCCGCCGCCGCCGTCAGCGGCGGTGGAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGC                                                                                                                                                               ]
[-] EMBL OSC30741             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCCCCGCCAGCCTGGATCAGGTCCTCGAGGGGATCTGGGGANAGT NCTGCNTGCTCCGCCACCGCCGCCGCCNCCGCCG CGCCAGCGGCGGTGCAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGCTGNAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGTGTATGCAACCGAATTTGTTGGGAAATATGCCGGAA                                                                         ]




>consensus_8072#0
ACACGCCCCCGTCTTTTCCCAAAGACGCGAGCTCGCCGCTGCGCAGCATCCAGATTCCAG
ATAGTACTATTGGCAAAGCACAGGTTTGGGGCGCCATGGGCTCCTACCACTACACCTCCA
CCTCCCACTTCTTCTTCGCCGGCGGCGGCGAGGGGGAGTACTCCAGCTACAAGGGTACTG
GTAGCACCGACACCCACAGGCCCACCACCGTGCGGATCCCGGTTACCACCCCGGGCCCGG
AGCGGCCGCCGGACGACGCGGCGGCGGCCAGGATCCAGGCCGCGTTCCGGGGGCACCTGG
TGAGGAGGCACGCCGCGGCCGTCCGCGGCGCCGACGACGAGGCGACGCGGCTGGAGCGGC
TGCTCCGGAGGCAGGAGACAGTGGACGCCGTCCGCGGCGACGAGCGCGAGCGGGCGCGGT
TCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGGTACTACCCGG
CCGTGCGGGAGGCGCGCCGCGCCGTGACCCGCCGCGTGGTGGGGCTGCAGGAGGTGTTCG
ACGCCGTGCTCGCCGCGCCCGACGCCGCCGACACGTGCGGGGTCCCCGCCAGCCTGGATC
AGGTCCTCGAGGGGATCTGGGGAGAGTCGCCGGCTGCGCCGCCACCGCCGCCGCCGCCGC
CGCCGCCAGCGGCGGTGGAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGCTGGAGGAGAT
TTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGCGTATGCAACCGAATTTGTT
GGGAAATATGCCGGAAATATGTTGGTGTGTACCTATAAAGTATTAAAGTGGTGTAGTATA
ATGCTATGAACAATCACGTAACATAGTAA

consensusID : consensus_8072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence

                              [AGGANATTTTTCGGGGGAGTNTAGCAAGTGGTGTAAACTGTNAAAAGTGTATGCAACCNAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTNCCTATAAAGTATTAAAGTGGTGTAGTATAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C99396               [AGGANATTTTTCGGGGGAGTNTAGCAAGTGGTGTAAACTGTNAAAAGTGTATGCAACCNAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTNCCTATAAAGTATTAAAGTGGTGTAGTATAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8072#1
AGGANATTTTTCGGGGGAGTNTAGCAAGTGGTGTAAACTGTNAAAAGTGTATGCAACCNA
ATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTNCCTATAAAGTATTAAAGTGGTG
TAGTATAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8072#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [GAGGAGTCCGTGCTGGAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGTGTATGCAACCGAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU094494             [GAGGAGTCCGTGCTGGAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGTGTATGCAACCGAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8072#2
GAGGAGTCCGTGCTGGAGGAGATTTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAA
AAGTGTATGCAACCGAATTTGTTGGGAAATATGCCGGAAATATGTTGGTGTGTAAAAAAA
AAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8072#0      ACACGCCCCCGTCTTTTCCCAAAGACGCGAGCTCGCCGCTGCGCAGCATCCAGATTCCAG 60
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      ATAGTACTATTGGCAAAGCACAGGTTTGGGGCGCCATGGGCTCCTACCACTACACCTCCA 120
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      CCTCCCACTTCTTCTTCGCCGGCGGCGGCGAGGGGGAGTACTCCAGCTACAAGGGTACTG 180
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      GTAGCACCGACACCCACAGGCCCACCACCGTGCGGATCCCGGTTACCACCCCGGGCCCGG 240
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      AGCGGCCGCCGGACGACGCGGCGGCGGCCAGGATCCAGGCCGCGTTCCGGGGGCACCTGG 300
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      TGAGGAGGCACGCCGCGGCCGTCCGCGGCGCCGACGACGAGGCGACGCGGCTGGAGCGGC 360
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      TGCTCCGGAGGCAGGAGACAGTGGACGCCGTCCGCGGCGACGAGCGCGAGCGGGCGCGGT 420
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      TCTCGGAGGCGCTCATGGCCGTGCTGCTCCGCCTCGACGCCGTCCCGGGGTACTACCCGG 480
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      CCGTGCGGGAGGCGCGCCGCGCCGTGACCCGCCGCGTGGTGGGGCTGCAGGAGGTGTTCG 540
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      ACGCCGTGCTCGCCGCGCCCGACGCCGCCGACACGTGCGGGGTCCCCGCCAGCCTGGATC 600
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      AGGTCCTCGAGGGGATCTGGGGAGAGTCGCCGGCTGCGCCGCCACCGCCGCCGCCGCCGC 660
consensus_8072#2      ------------------------------------------------------------
consensus_8072#1      ------------------------------------------------------------
                                                                                  

consensus_8072#0      CGCCGCCAGCGGCGGTGGAGGTGGAGGAGGAGGTGGTGAGGAGTCCGTGCTGGAGGAGAT 720
consensus_8072#2      -------------------------------------GAGGAGTCCGTGCTGGAGGAGAT 23
consensus_8072#1      -----------------------------------------------------AGGANAT 7
                                                                           **** **

consensus_8072#0      TTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGCGTATGCAACCGAATTTGTT 780
consensus_8072#2      TTTTCGGGGGAGTGTAGCAAGTGGTGTAAACTGTCAAAAGTGTATGCAACCGAATTTGTT 83
consensus_8072#1      TTTTCGGGGGAGTNTAGCAAGTGGTGTAAACTGTNAAAAGTGTATGCAACCNAATTTGTT 67
                      ************* ******************** ***** ********** ********

consensus_8072#0      GGGAAATATGCCGGAAATATGTTGGTGTGTACCTATAAAGTATTAAAGTGGTGTAGTATA 840
consensus_8072#2      GGGAAATATGCCGGAAATATGTTGGTGTGTAAAAAAAAAAAAAAAAAAAAAAAAA----- 138
consensus_8072#1      GGGAAATATGCCGGAAATATGTTGGTGTGTNCCTATAAAGTATTAAAGTGGTGTAGTATA 127
                      ******************************    * ***  *  ***       *     

consensus_8072#0      ATGCTATGAACAATCACGTAACATAGTAA 869
consensus_8072#2      -----------------------------
consensus_8072#1      AAAAAAAAAAAAAAAAAAAAA-------- 148