cluster # 8126

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Oryza sativa
cluster # 8126 cluster # 8126 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8126#0 length = 532 sequences # 4

consensus_8126#1 length = 465 sequences # 1

consensusID : consensus_8126#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 532
fasta sequence

                              [ACCCTGGTAGTGCCCAACTGGCAGCATACAAGATCTTGGCCCTCTTTGCGTTACTTGCTCTTTCTGCAAGCGCCGCTACTACAATCACCACCAT-CCATATCTCCAACC-AAC-ATAGCA-ATGGGCAATATGGATCCGTGTA-GCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGA-TGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGA-ACATGCAATATGCTATTTGTGGTGGACTTGGCCAAC-ACAAATGATGATGAAGATGGCGA-TGCAACTT-CCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTTGGTTACATGTACTCCAACAGTAAATTGTTGCATACTATCGTGTGCGACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGATTTATGTTCAAAAAAAAAAA]

[+] EMBL BI798695             [ACCCTGGTAGTGCCCAACATGCAGCATAC AGATCTT GCCCTCTTTGCGTTACTTGCTCTTTCTGCAAGC CCGCTACTACAATCACCACCAT CCATATCTCCAACC  AC ATA CA AT GGCAATATGGATCCGTGTA GCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGA TGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGA ACATGCAATATGCTATTTGTGGTGGACTTGGCCAAC ACAAATGATGATGAAGATGGCGA TGCAACTT CCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTTGGTTACATGTACTCCAACAGTAAATTGTTGCATACTATCGTGTGCGACTGGCTAGAATAAGAATCCTGAAATAAAGTTTCGATTTATGTTCAAAAAAAA   ]
[+] EMBL AU082975             [                  TGGCAGCATACAAGATCTTGGCCCTCTTTGCGTTACTTGCTCTTTCTGCAAGCGCCGCTACTACAATCACCACCATGCCATATCTCCAACC AACAATAGCA ATGGGCAATATGGATCCGTGTAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGA TGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGA ACATGCAATATGCTATTTGTGGTGGACTTGGCCAACAACAAATGATGATGAAGATGGCGA TGCAACTT CCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTTGGTTACATGTACTCCAACAGTAAATTGTTGCATACTATCGTGTGCGACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGATTTATGTTCAATAAAAAA  ]
[+] EMBL C73616               [                 aTGGCAGCATACAAGATCTTGGCCCTCTTTGCGTTACTTGCTCTTTCTGCAAGCGCCGCTACTACAATCACCACCATGCCATATCTCCAACC AACAATAGCA ATGGGCAATATGGATCCGTGTAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGA TGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGA ACATGCAATATGCTANTTGTGGTGGACTTGGCCAACAACNAATGATGATGAAGATGGCGA TGCAACTT CCAAACATGTNTAGCANGG CCCTGCCTACTTCCAG TCTCTCCCTATGGTTGTTG TAACC AACCTT                                                                                                      ]
[+] EMBL BI795184             [                                                                                               CCATATCTCCAACCTACC ATAGCACATGGGCAATATGGATCCGTGTA GCAGTACATGATGCCAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCCATTGCTCTCCGGCAACGATAGTGTTGCATGCAGCTACAAGGCATGAGTGCCACAGTGCCCGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAGACATGC ATATGCTATTTGTGGTGGACTTGGCCACA ACAAATGATGATGAAGATGGCGAGTGCAACTTCCCAACCGTGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCCAACCTTGGTTACATGTACTCC ACAGTAAATTGTTGCATACTATCGTGTGCGACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGATTTATGTTCCAAAAAAAAAA]




>consensus_8126#0
ACCCTGGTAGTGCCCAACTGGCAGCATACAAGATCTTGGCCCTCTTTGCGTTACTTGCTC
TTTCTGCAAGCGCCGCTACTACAATCACCACCATCCATATCTCCAACCAACATAGCAATG
GGCAATATGGATCCGTGTAGCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAA
CAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTACAAG
GCATGATGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACATGC
AATATGCTATTTGTGGTGGACTTGGCCAACACAAATGATGATGAAGATGGCGATGCAACT
TCCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTA
ACCAAACCTTGGTTACATGTACTCCAACAGTAAATTGTTGCATACTATCGTGTGCGACTG
GCTAGAATAAGAATCATGAAATAAAGTTTCGATTTATGTTCAAAAAAAAAAA

consensusID : consensus_8126#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [GACGAGACAAGGGGCACCATGCCATATCTCCAACCAACAATAGCAATGGGCAATATGGATCCGTGAAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTTTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGATGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACATGCAATATGCTATTTGTGGTGGGCTTGGCCAACAACAAATGATGATGAAGATGGCGATGCAACTTCCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTTGGTTACATGTACTCCAACAATAAATTGTTGCATACCATCGTGTGCGACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGGTTTAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA759532             [GACGAGACAAGGGGCACCATGCCATATCTCCAACCAACAATAGCAATGGGCAATATGGATCCGTGAAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATGCCACAACCAATTGCTTTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGATGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACATGCAATATGCTATTTGTGGTGGGCTTGGCCAACAACAAATGATGATGAAGATGGCGATGCAACTTCCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTTGGTTACATGTACTCCAACAATAAATTGTTGCATACCATCGTGTGCGACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGGTTTAAAAAAAAAAAAAAAAAAAA]




>consensus_8126#1
GACGAGACAAGGGGCACCATGCCATATCTCCAACCAACAATAGCAATGGGCAATATGGAT
CCGTGAAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACGCAACAATGTTCATG
CCACAACCAATTGCTTTCCTGCAACAATAGTGTTGCATGCAGCTACAAGGCATGATGCCA
CAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACATGCAATATGCTATT
TGTGGTGGGCTTGGCCAACAACAAATGATGATGAAGATGGCGATGCAACTTCCAAACATG
TGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTTGTTAACCAAACCTT
GGTTACATGTACTCCAACAATAAATTGTTGCATACCATCGTGTGCGACTGGCTAGAATAA
GAATCATGAAATAAAGTTTCGGTTTAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8126#0      ACCCTGGTAGTGCCCAACTGGCAGCATACAAGATCTTGGCCCTCTTTGCGTTACTTGCTC 60
consensus_8126#1      ------------------------------------------------------------
                                                                                  

consensus_8126#0      TTTCTGCAAGCGCCGCTACTACAATCACCACCAT-CCATATCTCCAACCAACA-TAGCAA 118
consensus_8126#1      --------------GACGAGACAAGGGGCACCATGCCATATCTCCAACCAACAATAGCAA 46
                                    *     ****    ****** ****************** ******

consensus_8126#0      TGGGCAATATGGATCCGTGTAG-CAGTACATGATGCAAACGACGGGCACAGATAGCTACG 177
consensus_8126#1      TGGGCAATATGGATCCGTGAAGGCAGTACATGATGCAAACGACGGGCACAGATAGCTACG 106
                      ******************* ** *************************************

consensus_8126#0      CAACAATGTTCATGCCACAACCAATTGCTCTCCTGCAACAATAGTGTTGCATGCAGCTAC 237
consensus_8126#1      CAACAATGTTCATGCCACAACCAATTGCTTTCCTGCAACAATAGTGTTGCATGCAGCTAC 166
                      ***************************** ******************************

consensus_8126#0      AAGGCATGATGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACA 297
consensus_8126#1      AAGGCATGATGCCACAGTGCCAGTGTGGGTATGGTACTAGTTGCCAGATGATACAGAACA 226
                      ************************************************************

consensus_8126#0      TGCAATATGCTATTTGTGGTGGACTTGGCCAACA-CAAATGATGATGAAGATGGCGATGC 356
consensus_8126#1      TGCAATATGCTATTTGTGGTGGGCTTGGCCAACAACAAATGATGATGAAGATGGCGATGC 286
                      ********************** *********** *************************

consensus_8126#0      AACTTCCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTT 416
consensus_8126#1      AACTTCCAAACATGTGTAGCATGGCCCCTGCCTACTTCCAGCTCTCTCCCTATGGTTGTT 346
                      ************************************************************

consensus_8126#0      GTTAACCAAACCTTGGTTACATGTACTCCAACAGTAAATTGTTGCATACTATCGTGTGCG 476
consensus_8126#1      GTTAACCAAACCTTGGTTACATGTACTCCAACAATAAATTGTTGCATACCATCGTGTGCG 406
                      ********************************* *************** **********

consensus_8126#0      ACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGATTTATGTTCAAAAAAAAAAA--- 532
consensus_8126#1      ACTGGCTAGAATAAGAATCATGAAATAAAGTTTCGGTTTAAAAAAAAAAAAAAAAAAAA 465
                      *********************************** ****     ***********