cluster # 8148

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Oryza sativa
cluster # 8148 cluster # 8148 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8148#0 length = 799 sequences # 4

consensus_8148#1 length = 589 sequences # 1

consensusID : consensus_8148#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 799
fasta sequence

                              [CTTCTCTGCTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCCAAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGATCCCTTCCCCTCGATCGACGGCGGCCATGGCGAGAATCCCGCTGCTGCTGGCCCTCCTGCTCGCCGTCTCCGCCGCCGCCGCCGCGCAGGTCGGGGGTAACCGCGGCCATGGCCCGCTGGTGGGCGGGTGGAGCCCGATCACGGACGTGGGCGACCCCCACATCCAGGAGCTCGGCGGGTGGGCGGTGGAGCGGCACGCCTCGCTCTCCAGCGACGGGCTGCGGTTCCGCCGCGTGACGAGCGGCGAGCAGCAGGTGGTCTCCGGGATGAACTACCGCCTCGTCGTCTCCGCGTCAGATCCCGCGGGGGCCACCGCGTCCTACGTCGCCGTCGTGTACGAGCAGTCGTGGACCAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAAT-GAATTAGCGAATAAAATGGTGGGATTGGAATAATGGTGCCCATCTTAATTCAAAAAAA]

[+] EMBL AK102768             [CTTCTCTGCTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCCAAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGATCCCTTCCCCTCGATCGACGGCGGCCATGGCGAGAATCCCGCTGCTGCTGGCCCTCCTGCTCGCCGTCTCCGCCGCCGCCGCCGCGCAGGTCGGGGGTAACCGCGGCCATGGCCCGCTGGTGGGCGGGTGGAGCCCGATCACGGACGTGGGCGACCCCCACATCCAGGAGCTCGGCGGGTGGGCGGTGGAGCGGCACGCCTCGCTCTCCAGCGACGGGCTGCGGTTCCGCCGCGTGACGAGCGGCGAGCAGCAGGTGGTCTCCGGGATGAACTACCGCCTCGTCGTCTCCGCGTCAGATCCCGCGGGGGCCACCGCGTCCTACGTCGCCGTCGTGTACGAGCAGTCGTGGACCAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAAT GAATTAGCGAATAAAATG                                        ]
[+] EMBL BI801723             [                                                                                                                                                                                                             gccaGTC GGGGT ACC C GCCAT GCCCCCT GT GGC GGTTGAGCCCGATCACGGACGTGGGCGACCCCCACATCCAGGAGCTC GCGGGTGTGCAGTGGAACGGCACGCCTCGCTCTCCAGCGACGGGCTGCGGTTCCGCCGCGTGACGAGCGGCGAGCAGCAGGTGGTCTCCGGGATGAACTACCGCCTCGTCGTCTCCGCGTCAGATCCCGCGGGGGCCACCGCGTCCTACGTCGCCGTCGTGTACGA CAGTCGTGGACC ACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAAT GAATTAGCGAATAAAATGGTGGGATTGGAATAATGGTGCCCATCTTAATTCAAAAAAA]
[+] EMBL AU174925             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGCGTCCTACGTCGCCGTCGTGTACGAGCAGTCGTGGACCAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAATGGATTTAGCGAATAAAATGGTGGGATTGG                              ]
[-] EMBL AU174926             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGTCGCCGTCGTGTACGAGCAGTCGTGGACCAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAAT GAATTAGCGAATAAAATGGTGGG                                   ]




>consensus_8148#0
CTTCTCTGCTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCC
AAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGA
TCCCTTCCCCTCGATCGACGGCGGCCATGGCGAGAATCCCGCTGCTGCTGGCCCTCCTGC
TCGCCGTCTCCGCCGCCGCCGCCGCGCAGGTCGGGGGTAACCGCGGCCATGGCCCGCTGG
TGGGCGGGTGGAGCCCGATCACGGACGTGGGCGACCCCCACATCCAGGAGCTCGGCGGGT
GGGCGGTGGAGCGGCACGCCTCGCTCTCCAGCGACGGGCTGCGGTTCCGCCGCGTGACGA
GCGGCGAGCAGCAGGTGGTCTCCGGGATGAACTACCGCCTCGTCGTCTCCGCGTCAGATC
CCGCGGGGGCCACCGCGTCCTACGTCGCCGTCGTGTACGAGCAGTCGTGGACCAACACCC
GCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTA
TCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCT
CTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACC
TGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGA
CAGCGAGTCCACACTTGTAATGAATTAGCGAATAAAATGGTGGGATTGGAATAATGGTGC
CCATCTTAATTCAAAAAAA

consensusID : consensus_8148#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [CTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCCAAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGATCCCTTCCCCTCGATCGACGGCGGCNNCATGNGNCGAAGNAAAATCCCGNNCTGCTGCCTGGCCCCTCCCTTGCCTCGNCCGGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAANNNGGGGGGGGGGGAAAAAAACCCCGCGGGGGGNCACTATTTGGGGCCCCCCCCCTTTTTTTTTTTTGTNGGCCGCCCCCCGGGTGGTAGAGAGAACCCCCCTAAAAAAAAAAGGAAAAAGGGGGGGGGAAAAAACCCCCCCCCCAAATTTTTTAAGAAAAATTCTTGGTTNNNGGGGGGGGGGGCCGCCGGGGGTAAAAAAAAAAAGGGCCCCCCCCC]

[+] EMBL CA758428             [CTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCCAAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGATCCCTTCCCCTCGATCGACGGCGGCNNCATGNGNCGAAGNAAAATCCCGNNCTGCTGCCTGGCCCCTCCCTTGCCTCGNCCGGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAANNNGGGGGGGGGGGAAAAAAACCCCGCGGGGGGNCACTATTTGGGGCCCCCCCCCTTTTTTTTTTTTGTNGGCCGCCCCCCGGGTGGTAGAGAGAACCCCCCTAAAAAAAAAAGGAAAAAGGGGGGGGGAAAAAACCCCCCCCCCAAATTTTTTAAGAAAAATTCTTGGTTNNNGGGGGGGGGGGCCGCCGGGGGTAAAAAAAAAAAGGGCCCCCCCCC]




>consensus_8148#1
CTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCCAAGCGCCC
GAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGATCCCTTCC
CCTCGATCGACGGCGGCNNCATGNGNCGAAGNAAAATCCCGNNCTGCTGCCTGGCCCCTC
CCTTGCCTCGNCCGGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAAAAAAAANNNGGGGGGGGGGGAAAAAAACCCCGCGGGGGGNCACTATTTGGGGCCCC
CCCCCTTTTTTTTTTTTGTNGGCCGCCCCCCGGGTGGTAGAGAGAACCCCCCTAAAAAAA
AAAGGAAAAAGGGGGGGGGAAAAAACCCCCCCCCCAAATTTTTTAAGAAAAATTCTTGGT
TNNNGGGGGGGGGGGCCGCCGGGGGTAAAAAAAAAAAGGGCCCCCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8148#0      CTTCTCTGCTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCC 60
consensus_8148#1      --------CTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCC 52
                              ****************************************************

consensus_8148#0      AAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGA 120
consensus_8148#1      AAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGA 112
                      ************************************************************

consensus_8148#0      TCCCTTCCCCTCGATCGACGGCGGCCA----TGGCGAG----AATCCCGCTGCTGCTGGC 172
consensus_8148#1      TCCCTTCCCCTCGATCGACGGCGGCNNCATGNGNCGAAGNAAAATCCCGNN-CTGCTGCC 171
                      *************************       * ***     *******   ****** *

consensus_8148#0      CCTCCTGCTCGCCGTCTCCGCCGCCGCCGCCGCGCAGGTCGGGGGTAACCGCGGCCATGG 232
consensus_8148#1      TGGCCCCTCCCTTGCCTCGNCCGGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 231
                         **    *   * ***  ***                                     

consensus_8148#0      CCCGCTGGTGGGCGGGTGGAGCCCGATCACGGACGTGGGCGACCCCCACATCCAGGAGCT 292
consensus_8148#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 291
                                                                                  

consensus_8148#0      CGGCGGGTGGGCGGTGGAGCGGCACGCCTCGCTCTCCAGCGACGGGCTGCGGTTCCGCCG 352
consensus_8148#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 351
                                                                                  

consensus_8148#0      CGTGACGAGCGGCGAGCAGCAGGTGGTCTCCGGGATGAACTACCGCCTCGTCGTCTCCGC 412
consensus_8148#1      NNNNNNNNNNAAAAAAAAANNNGGGGGGGGGGGAAAAAAACCCCGCGGGGG-GNCACTAT 410
                                    *  *    * **     ** *  **   ****   *  * * *   

consensus_8148#0      GTCAGATCCCGCGGGGGCCACCGCGTCCTACGTCGCCGTCGTGTACGAGCAGTCGTGGAC 472
consensus_8148#1      TTGGGGCCCC-------CCCCCTTTTTTTTTTTTGTNGGC-CGCCCCCCGGGTGGTAGAG 462
                       *  *  ***       ** **   *  *   * *  * *  *  *     ** ** ** 

consensus_8148#0      CAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTC 532
consensus_8148#1      AGAACCCCCCTAAAAAA--------AAAAGGAAAAAGGGGGGGGGAAAAAACCCCCCCCC 514
                        *  *** * *    *        **          * *    **   * *** *** *

consensus_8148#0      CAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTG 592
consensus_8148#1      CAAATTT--TTTAAGAAAAATTCTTGGTTNNNGGGGGGGGGGGCCGCCGGGGGTAAAAAA 572
                      ** ** *   ***   *    ****            *    ** *       *      

consensus_8148#0      CCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGC 652
consensus_8148#1      AAAAAGGGCCCCCCCCC------------------------------------------- 589
                         **   * * *                                               

consensus_8148#0      TAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGC 712
consensus_8148#1      ------------------------------------------------------------
                                                                                  

consensus_8148#0      ATGTAAGACAGCGAGTCCACACTTGTAATGAATTAGCGAATAAAATGGTGGGATTGGAAT 772
consensus_8148#1      ------------------------------------------------------------
                                                                                  

consensus_8148#0      AATGGTGCCCATCTTAATTCAAAAAAA 799
consensus_8148#1      ---------------------------