cluster # 818

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Oryza sativa
cluster # 818 cluster # 818 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_818#0 length = 691 sequences # 1

consensus_818#1 length = 324 sequences # 1

consensusID : consensus_818#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [TTTTTTTTTTTTTTTTATTATAATTGCAAAGGCTCACATTCATATTTGAATCCATCTTTACATTGGATATTGAAAATGAAACGACACATGGTACCAATCACTCATCTGCAACGACAGAACTAAAAATTTGTAGTACTAAACGAGAAGCCATTATAAGCCAGTACCTCGTGAGAGATGAGAGAAGCAAAAACACAAGCACGCATGCCCGGAGTCCACTGATAAGTGACAACCCCTATGAAGTGATTAGGGATATTCGCATCATGTTAGCTGAACAGTACACTACTAATGCACGGGAAGACGACTTTGATGCAAAACCTAATGACAAGTACAACCAGGGCGAAGGAAACGTGGCCTGGGGTGGTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACTTAAACTTATATGCGGAGGATGTATTCTGCATACCACGATAAAAAGTGGAGCAAGAGCGATATCCACCCTCCATAAGATAAATTTTGCAGGACAGCTCGGTAGCAAAGCACATATTGAAGCACGCTGCCCATACAAAAATCCTGCTGTTTAGAAAATACACGCTAGGAATAGAAAACCAAGGGAAGACTCGCCTTCACATTGATAACATGGGGGAAAAATGGATTGTTGAGGAAACCATAGATGAATTGGGCCGAACTCAACTGCCCCATTTTTCCCAAACC]

[+] EMBL CA759123             [TTTTTTTTTTTTTTTTATTATAATTGCAAAGGCTCACATTCATATTTGAATCCATCTTTACATTGGATATTGAAAATGAAACGACACATGGTACCAATCACTCATCTGCAACGACAGAACTAAAAATTTGTAGTACTAAACGAGAAGCCATTATAAGCCAGTACCTCGTGAGAGATGAGAGAAGCAAAAACACAAGCACGCATGCCCGGAGTCCACTGATAAGTGACAACCCCTATGAAGTGATTAGGGATATTCGCATCATGTTAGCTGAACAGTACACTACTAATGCACGGGAAGACGACTTTGATGCAAAACCTAATGACAAGTACAACCAGGGCGAAGGAAACGTGGCCTGGGGTGGTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACTTAAACTTATATGCGGAGGATGTATTCTGCATACCACGATAAAAAGTGGAGCAAGAGCGATATCCACCCTCCATAAGATAAATTTTGCAGGACAGCTCGGTAGCAAAGCACATATTGAAGCACGCTGCCCATACAAAAATCCTGCTGTTTAGAAAATACACGCTAGGAATAGAAAACCAAGGGAAGACTCGCCTTCACATTGATAACATGGGGGAAAAATGGATTGTTGAGGAAACCATAGATGAATTGGGCCGAACTCAACTGCCCCATTTTTCCCAAACC]




>consensus_818#0
TTTTTTTTTTTTTTTTATTATAATTGCAAAGGCTCACATTCATATTTGAATCCATCTTTA
CATTGGATATTGAAAATGAAACGACACATGGTACCAATCACTCATCTGCAACGACAGAAC
TAAAAATTTGTAGTACTAAACGAGAAGCCATTATAAGCCAGTACCTCGTGAGAGATGAGA
GAAGCAAAAACACAAGCACGCATGCCCGGAGTCCACTGATAAGTGACAACCCCTATGAAG
TGATTAGGGATATTCGCATCATGTTAGCTGAACAGTACACTACTAATGCACGGGAAGACG
ACTTTGATGCAAAACCTAATGACAAGTACAACCAGGGCGAAGGAAACGTGGCCTGGGGTG
GTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACTTAAACTTATA
TGCGGAGGATGTATTCTGCATACCACGATAAAAAGTGGAGCAAGAGCGATATCCACCCTC
CATAAGATAAATTTTGCAGGACAGCTCGGTAGCAAAGCACATATTGAAGCACGCTGCCCA
TACAAAAATCCTGCTGTTTAGAAAATACACGCTAGGAATAGAAAACCAAGGGAAGACTCG
CCTTCACATTGATAACATGGGGGAAAAATGGATTGTTGAGGAAACCATAGATGAATTGGG
CCGAACTCAACTGCCCCATTTTTCCCAAACC

consensusID : consensus_818#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [TTTTTTTTTTTTTGAAGGAAACGTGGCCTGGGGTGGTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACAGCTCGGTAGCAAAGCACATATTGAATCATGCTGCCGATACAAAAATCCTGCTGTTTAGAAGATACAAGCTAGGAATAGAAAAGCAAGCGAAGACTCAACATCAACATTGATAACATGTGGGAAAAATGATTGTTGAGGAAACCATAGATAAATTGGCCGAACTCAACTGCCCATTTTTCCCAAAACTGGTTTAGCAGGAAAGTTTAAGCAGCATGTACAATGAAATTGTATGTGCAGCT]

[-] EMBL CF314001             [TTTTTTTTTTTTTGAAGGAAACGTGGCCTGGGGTGGTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACAGCTCGGTAGCAAAGCACATATTGAATCATGCTGCCGATACAAAAATCCTGCTGTTTAGAAGATACAAGCTAGGAATAGAAAAGCAAGCGAAGACTCAACATCAACATTGATAACATGTGGGAAAAATGATTGTTGAGGAAACCATAGATAAATTGGCCGAACTCAACTGCCCATTTTTCCCAAAACTGGTTTAGCAGGAAAGTTTAAGCAGCATGTACAATGAAATTGTATGTGCAGCT]




>consensus_818#1
TTTTTTTTTTTTTGAAGGAAACGTGGCCTGGGGTGGTATAAACAAAGAATTGTACAGCTT
ACAAGTTACAATCCAGAATTAAACAGCTCGGTAGCAAAGCACATATTGAATCATGCTGCC
GATACAAAAATCCTGCTGTTTAGAAGATACAAGCTAGGAATAGAAAAGCAAGCGAAGACT
CAACATCAACATTGATAACATGTGGGAAAAATGATTGTTGAGGAAACCATAGATAAATTG
GCCGAACTCAACTGCCCATTTTTCCCAAAACTGGTTTAGCAGGAAAGTTTAAGCAGCATG
TACAATGAAATTGTATGTGCAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_818#0      TTTTTTTTTTTTTTTTATTATAATTGCAAAGGCTCACATTCATATTTGAATCCATCTTTA 60
consensus_818#1      ------------------------------------------------------------
                                                                                 

consensus_818#0      CATTGGATATTGAAAATGAAACGACACATGGTACCAATCACTCATCTGCAACGACAGAAC 120
consensus_818#1      ------------------------------------------------------------
                                                                                 

consensus_818#0      TAAAAATTTGTAGTACTAAACGAGAAGCCATTATAAGCCAGTACCTCGTGAGAGATGAGA 180
consensus_818#1      ------------------------------------------------------------
                                                                                 

consensus_818#0      GAAGCAAAAACACAAGCACGCATGCCCGGAGTCCACTGATAAGTGACAACCCCTATGAAG 240
consensus_818#1      ------------------------------------------------------------
                                                                                 

consensus_818#0      TGATTAGGGATATTCGCATCATGTTAGCTGAACAGTACACTACTAATGCACGGGAAGACG 300
consensus_818#1      ------------------------------------------------------------
                                                                                 

consensus_818#0      ACTTTGATGCAAAACCTAATGACAAGTACAACCAGGGCGAAGGAAACGTGGCCTGGGGTG 360
consensus_818#1      ------------------------------------------------------------
                                                                                 

consensus_818#0      GTATAAACAAAGAATTGTACAGCTTACAAGTTACAATCCAGAATTAAACTTAAACTTATA 420
consensus_818#1      ------------------------------------------------TTTTTTTTTTTT 12
                                                                      **    ** * 

consensus_818#0      TGCGGAGGATGTATTCTGCATACCACGATAAAAAGTGGAGCAAGAGCGATATCCACCCTC 480
consensus_818#1      TGAAGGAAACGTGGCCTGGG----GTGGTATAAAC--AAAGAATTGTACAGCTTACAAGT 66
                     **  *   * **   ***        * ** ***    *  **  *        **    

consensus_818#0      CATAAGATAAATTTTGCAGGACAGCTCGGTAGCAAAGCACATATTGAAGCACGCTGCCCA 540
consensus_818#1      TACAATCCAGAATT----AAACAGCTCGGTAGCAAAGCACATATTGAATCATGCTGCCGA 122
                      * **   * * **      **************************** ** ****** *

consensus_818#0      TACAAAAATCCTGCTGTTTAGAAAATACACGCTAGGAATAGAAAACCAAGGGAAGACTCG 600
consensus_818#1      TACAAAAATCCTGCTGTTTAGAAGATACAAGCTAGGAATAGAAAAGCAAGCGAAGACTCA 182
                     *********************** ***** *************** **** ******** 

consensus_818#0      CCTTCA-CATTGATAACATGGGGGAAAAATGGATTGTTGAGGAAACCATAGATGAATTGG 659
consensus_818#1      ACATCAACATTGATAACATGTGGGAAAAATG-ATTGTTGAGGAAACCATAGATAAATTGG 241
                      * *** ************* ********** ********************* ******

consensus_818#0      GCCGAACTCAACTGCCCCATTTTTCCCAAACC---------------------------- 691
consensus_818#1      -CCGAACTCAACTGCCC-ATTTTTCCCAAAACTGGTTTAGCAGGAAAGTTTAAGCAGCAT 299
                      **************** ************ *                            

consensus_818#0      -------------------------
consensus_818#1      GTACAATGAAATTGTATGTGCAGCT 324