cluster # 8203

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Oryza sativa
cluster # 8203 cluster # 8203 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8203#0 length = 914 sequences # 2

consensus_8203#1 length = 450 sequences # 3

consensusID : consensus_8203#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 914
fasta sequence

                              [GCTACGTGACGGCATGACAGTGTTTTTTTTTTTTTTTTTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGGTAGGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGACAAGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCACGGTGAGTGGTGGCAGGTACGATAAGGTATCGATATTCTTTATTGCGTGCAGTTGGACAAATCTGGGTGATTATTGGAAGATCATCCGGTAGCACCTGCAGCTTCTTCTGCGACTTGGGATCCCTGTTGCAGAGTGCAGATGAGGTTGCGATCCCCGTACACATTGTCCACGCGACATGTTGTTGGCCAGAACTTGGCACCCCGAAGCCACGCTGCAGGGAACGCAGCGTACTCCCTGGAGTACGGCTTAGTCCATGAGTC]

[+] EMBL CF332929             [GCTACGTGACGGCATGACAGTGTTTTTTTTTTTTTTTTTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGGTAGGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAG                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL BE230159             [                                                                                                                                                                                                                                                                                                                                                                                                                    TTGTCGAAGCCGATGATACGGACAAAGGCATC AGGGTA GGCCTTCTTGGCCTCGTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTATCCGGGAGACCTGTGGTTCTCACGGTAGACGAACCCAACCTTGCTGAACTCGAGACAAGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCACGGTGAGTGGTGGCAGGTACGATAAGGTATCGATATTCTTTATTGCGTGCAGTTGGACAAATCTGGGTGATTATTGGAAGATCATCCGGTAGCACCTGCAGCTTCTTCTGCGACTTGGGATCCCTGTTGCAGAGTGCAGATGAGGTTGCGATCCCCGTACACATTGTCCACGCGACATGTTGTTGGCCAGAACTTGGCACCCCGAAGCCACGCTGCAGGGAACGCAGCGTACTCCCTGGAGTACGGCTTAGTCCATGAGTC]




>consensus_8203#0
GCTACGTGACGGCATGACAGTGTTTTTTTTTTTTTTTTTTATCAGATATGCTCTAGATAC
ATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTG
TAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTA
AGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATAT
TATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCA
GCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTG
GGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGA
TACGGACAAAGGCATCGGGGGTAGGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTG
GGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTA
GTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGACA
AGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCACGGTGAG
TGGTGGCAGGTACGATAAGGTATCGATATTCTTTATTGCGTGCAGTTGGACAAATCTGGG
TGATTATTGGAAGATCATCCGGTAGCACCTGCAGCTTCTTCTGCGACTTGGGATCCCTGT
TGCAGAGTGCAGATGAGGTTGCGATCCCCGTACACATTGTCCACGCGACATGTTGTTGGC
CAGAACTTGGCACCCCGAAGCCACGCTGCAGGGAACGCAGCGTACTCCCTGGAGTACGGC
TTAGTCCATGAGTC

consensusID : consensus_8203#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 450
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAAATATGCTCTAAATACATA-TCTTGGGTGTATAT-AGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAGAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGCTCGTGCCGAATTCGGCACG]

[+] EMBL CF297915             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAAATATGCTCTAAATACATA TCTTGGGTGTATAT AGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATTTGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTGGGCGATGAAACTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGAT                                       ]
[+] EMBL CF334475             [          TTTTTTTTTTTTTTTTTTTTATCAAATATGCTCTAAATACATATTCTTGGGTGTATATAAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAGAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATA                                      ]
[-] EMBL BE229927             [                             TATCAGATATGCTCTAGATACATA TCTTGTGTGTATAT AGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGCTCGTGCCGAATTCGGCACG]




>consensus_8203#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAAATATGCTCTAAATACATATCTTGGG
TGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTT
ACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAGAGG
CCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGA
TATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACC
AGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTA
GGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAA
GGCATCGGGGCTCGTGCCGAATTCGGCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8203#0      GCTACGTGACGGCATGACAGTGTTTTTTTTTTTTTTTTTTATCAGATATGCTCTAGATAC 60
consensus_8203#1      ----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAAATATGCTCTAAATAC 50
                                    *     * ********************** ********** ****

consensus_8203#0      ATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTG 120
consensus_8203#1      ATATCTTGGGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTG 110
                      ******** ***************************************************

consensus_8203#0      TAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTA 180
consensus_8203#1      TAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTA 170
                      **************************** ********** * ******************

consensus_8203#0      AGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATAT 240
consensus_8203#1      AAAGCAGAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATAT 230
                      * *************** ******************************************

consensus_8203#0      TATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCA 300
consensus_8203#1      TATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCA 290
                      ************************************************************

consensus_8203#0      GCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTG 360
consensus_8203#1      GCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTG 350
                      ******************************************** ***************

consensus_8203#0      GGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGA 420
consensus_8203#1      GGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGA 410
                      ************************************************* **********

consensus_8203#0      TACGGACAAAGGCATCGGGGGTAGGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTG 480
consensus_8203#1      TACGGACAAAGGCATCGGGGCTCGTGCCGAATTCGGCACG-------------------- 450
                      ******************** * * ***   ** * * *                     

consensus_8203#0      GGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTA 540
consensus_8203#1      ------------------------------------------------------------
                                                                                  

consensus_8203#0      GTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGACA 600
consensus_8203#1      ------------------------------------------------------------
                                                                                  

consensus_8203#0      AGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCACGGTGAG 660
consensus_8203#1      ------------------------------------------------------------
                                                                                  

consensus_8203#0      TGGTGGCAGGTACGATAAGGTATCGATATTCTTTATTGCGTGCAGTTGGACAAATCTGGG 720
consensus_8203#1      ------------------------------------------------------------
                                                                                  

consensus_8203#0      TGATTATTGGAAGATCATCCGGTAGCACCTGCAGCTTCTTCTGCGACTTGGGATCCCTGT 780
consensus_8203#1      ------------------------------------------------------------
                                                                                  

consensus_8203#0      TGCAGAGTGCAGATGAGGTTGCGATCCCCGTACACATTGTCCACGCGACATGTTGTTGGC 840
consensus_8203#1      ------------------------------------------------------------
                                                                                  

consensus_8203#0      CAGAACTTGGCACCCCGAAGCCACGCTGCAGGGAACGCAGCGTACTCCCTGGAGTACGGC 900
consensus_8203#1      ------------------------------------------------------------
                                                                                  

consensus_8203#0      TTAGTCCATGAGTC 914
consensus_8203#1      --------------