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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2197 fasta sequence
[ACCACCACCACCTCCCCCGTCCTCCTCTCCTCCACCGCAACCGCAACCACGGCCAGCCACGGGCCAAGCGAGTCACGACTGGCACAACGAGGCAAAAACACCATTGCTACCCCCGAGGCGTCCCTCTCAGCTAGCCCTGGCACCCGCACCACCTAGCGGCGGCGCCGTCGTGTTCGTGTCGGCCAAGTCGTCAAGAAGCTAGCTAGTCATTGCCAGTGGGCGCATTGTGCTAGGGGATGGCGAGAGGAGGAGGAGGAGGAGAGGAGGCGGCGGAGGAGGAGAGGGAGGTGAGCGAGGCGCTGACGGCGGACTCGTCGGCCGACGAGGAGTGCCGCCGCGGGAGCAGCAGCTCCAGCGCAAGCTCCGGGGACGCCTCCAGCGAGTCCTACTGCCCGCCCGACGAGTGGCAGAAGGTGGCCATCAAGACCTGCGTGTCGTCCGACCTCGTCGTCGTCTCGGCCGAGCCGGCCAAGGAGAAGAAGCCGCCGCCGCCGCCGTCGTCGCCGCGTGTCGACGCCGCCCCGGCGGACAAGCACCACCGGCCCTCAGAGATGGAGATGATGAAGGAGAGGTTCGCGAAGCTGCTGCTCGGCGAGGACATGTCCGGCGGCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACCTCTGCGCGACGATATTTGGGCAGCTGTGGAGGCTGGAGCCGCTGCTGCCGGAGAAAAAGACGATGTGGCGGCGCGAGATGGACTGGCTGCTCTGCGTCAGCGACCACATCGTCGAGCTAGTCCCCACATGGCAGACATTCCCCGACGGGAGTAAGCTTGAGATCATGACAAGCAGGCCACGGTCTGATCTCTACATCAATCTGCCCGCACTCCGAAAGCTAGACCACATGCTCCTCGAAATTCTGGAGAGCTTCAGGGACCCGGAATTCTGGTACGTCGACCAGGGGATTTGCCCGCCGGACCGCGACGGCAGCGCCCCCTTCATGCTAACGTTCCACCGCCGCGACGAGAAGTGGTGGCTGCCCGTGCCCCGCGTCCCTCCCGGCGGCGTCGGCGAGACCACGAGGAGGCAGCTCGAGCACAAGCGCGACTGCGCCAGCCAGATCTTCAAGGCCGCCATGGCCATCAACAGCAACGCCCTCGCCGAAATGGACGTCCCCGACTCTTACCTCGACTCGTTACCCAAGAACGGGCGTGCGACGCTGGGCGACATCATATACAGGTACATCACGTCGGACCAGTTCTCGCCGGACTGCCTGCTCGACTGCCTCGACCTGTCGTCGGAGTACCAGGCGCTGGAGATCGCCAACCGCGTCGAGGCCTCCATCTACGTGTGGCGCCGGAGGGGCACGTCGGGCGCCGCGAGCCGCGCCGGAAACAAGTCGTCATGGGGCATCGTCAAGGACATGATCATGGACACGGAGAAGAGAGACGACCTCCTCGCCGACCGCGCCGAGGGCCTCCTCATGTGCCTCAAGCAGAGGTTCCCCGGACTGACGCAGACCAGCCTGGACACGAGCAAGATTCAGTACAACAAGGATGTGGGGAAATCGATTCTGGAGAGCTACTCGAGGGTTCTGGAGAGCCTGGCGTCGAACATCATCGCGCGGATCGACGACCTGCTGTACGTCGACGAGCGGA-CAGGCAGGCGGA-CTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCAC-GCCGAGCTTCTCGCCGGCGCA-NTGTCCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGT-NC-ACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGTG-TTCGACCTACCGGGCCTGTGAATCGATCGATCACGGGCCCCGTGTCT-AGTGCTTTACTTACCCTCGCCTGTGTGCAGTAG-TTGTAATGTTGTATGGCGTGATTTCTTCTCGGGAGGGCGGCCTGTTTTTGCCGTTTCGCCGTTTCGCCGCCCTCCAGTTTTATGATGTGTTTTGACAGTGCCTTTGTTAACTTGCTAGTGTTGTAAGAGTGCTTAAGTTCGATGTTGGTCGGATGGCAAAAGAGAACCATCGCGTTTGTGCAAACCACAGAGTTTTCT]
[+] EMBL AK101945 [ACCACCACCACCTCCCCCGTCCTCCTCTCCTCCACCGCAACCGCAACCACGGCCAGCCACGGGCCAAGCGAGTCACGACTGGCACAACGAGGCAAAAACACCATTGCTACCCCCGAGGCGTCCCTCTCAGCTAGCCCTGGCACCCGCACCACCTAGCGGCGGCGCCGTCGTGTTCGTGTCGGCCAAGTCGTCAAGAAGCTAGCTAGTCATTGCCAGTGGGCGCATTGTGCTAGGGGATGGCGAGAGGAGGAGGAGGAGGAGAGGAGGCGGCGGAGGAGGAGAGGGAGGTGAGCGAGGCGCTGACGGCGGACTCGTCGGCCGACGAGGAGTGCCGCCGCGGGAGCAGCAGCTCCAGCGCAAGCTCCGGGGACGCCTCCAGCGAGTCCTACTGCCCGCCCGACGAGTGGCAGAAGGTGGCCATCAAGACCTGCGTGTCGTCCGACCTCGTCGTCGTCTCGGCCGAGCCGGCCAAGGAGAAGAAGCCGCCGCCGCCGCCGTCGTCGCCGCGTGTCGACGCCGCCCCGGCGGACAAGCACCACCGGCCCTCAGAGATGGAGATGATGAAGGAGAGGTTCGCGAAGCTGCTGCTCGGCGAGGACATGTCCGGCGGCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACCTCTGCGCGACGATATTTGGGCAGCTGTGGAGGCTGGAGCCGCTGCTGCCGGAGAAAAAGACGATGTGGCGGCGCGAGATGGACTGGCTGCTCTGCGTCAGCGACCACATCGTCGAGCTAGTCCCCACATGGCAGACATTCCCCGACGGGAGTAAGCTTGAGATCATGACAAGCAGGCCACGGTCTGATCTCTACATCAATCTGCCCGCACTCCGAAAGCTAGACCACATGCTCCTCGAAATTCTGGAGAGCTTCAGGGACCCGGAATTCTGGTACGTCGACCAGGGGATTTGCCCGCCGGACCGCGACGGCAGCGCCCCCTTCATGCTAACGTTCCACCGCCGCGACGAGAAGTGGTGGCTGCCCGTGCCCCGCGTCCCTCCCGGCGGCGTCGGCGAGACCACGAGGAGGCAGCTCGAGCACAAGCGCGACTGCGCCAGCCAGATCTTCAAGGCCGCCATGGCCATCAACAGCAACGCCCTCGCCGAAATGGACGTCCCCGACTCTTACCTCGACTCGTTACCCAAGAACGGGCGTGCGACGCTGGGCGACATCATATACAGGTACATCACGTCGGACCAGTTCTCGCCGGACTGCCTGCTCGACTGCCTCGACCTGTCGTCGGAGTACCAGGCGCTGGAGATCGCCAACCGCGTCGAGGCCTCCATCTACGTGTGGCGCCGGAGGGGCACGTCGGGCGCCGCGAGCCGCGCCGGAAACAAGTCGTCATGGGGCATCGTCAAGGACATGATCATGGACACGGAGAAGAGAGACGACCTCCTCGCCGACCGCGCCGAGGGCCTCCTCATGTGCCTCAAGCAGAGGTTCCCCGGACTGACGCAGACCAGCCTGGACACGAGCAAGATTCAGTACAACAAGGATGTGGGGAAATCGATTCTGGAGAGCTACTCGAGGGTTCTGGAGAGCCTGGCGTCGAACATCATCGCGCGGATCGACGACCTGCTGTACGTCGACGAGCGGAGCAGGCAGGCGGAGCTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCAC GCCGAGCTTCTCGCCGGCGCAGCTGT CGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTCGC ACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGTG TTCGACCTACCGGGCCTGTGAATCGATCGATCACGGGCCCCGTGTCT AGTGCTTTACTTACCCTCGCCTGTGTGCAGTAG TTGTAATGTTGTATGGCGTGATTTCTTCTCGGGAGGGCGGCCTGTTTTTGCCGTTTCGCCGTTTCGCCGCCCTCCAGTTTTATGATGTGTTTTGACAGTGCCTTTGTTAACTTGCTAGTGTTGTAAGAGTGCTTAAGTTCGATGTTGGTCGGATGGCAAAAGAGAACCATCGCGTTTGTGCAAACCACAGAGTTTTCT]
[+] EMBL AU058371 [ AGCGGA CAGGCAGGCGGA CTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCAC GCCGAGCTTCTCGCCGGCGCA NTGTCCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTNNCAACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGTGTTTCGACCTACCGGG CTGTGAATCGATCGATTAAGGGC ]
[+] EMBL AU058372 [ AGCGGA CAGGCAGGCGGA CTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCACAGCCGAGCTTCTCGCCGGCGCA NTGTACGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGT NC ACGACGGCCGANCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAANGCCGTG TTCGACCTAACGGGCCTGTGAATCGATCGATCACAGGg ]
[+] EMBL C74737 [ GCGGA CAGGCAGGCGGA CTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCAC GCCGAGCTTCTCGCCGGCGCA NTGTCCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGT NC ACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGTG TTCGACCTACCGGGCCTGTGAATCGATCGATCACGGGCCCCGTGTCTAATTGCTTTACTTANCCTCGCCTGTGTGCAGTAGTTTGTAATGTTGTATGGCGTGATTTCTTCTCNGGAAGGC ]
consensusID : consensus_8243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[CGGACAGGACAGGCGGACTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGGTAGCCACGCCGAGCTTCTCGCCGGCGCANTGTCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTNCAACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCACAACGCGTGTTCGANCTACCGGGCCTGTGAATCGATCGATCACNGGGCCCGTGTCTAGTGTTACTTACCCTCGCTGTGTNAGTAGTTGTATGTTGATGCGTATTCTTTCGGAGGCGGCTGTTTGCGTTCGCGTTGCGCCTCAGTTATATGTGTTGAATCTTTTAATN]
[+] EMBL C74760 [CGGACAGGACAGGCGGACTGCTTCCAACCGCGGGCGCCGGGAGCGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGGTAGCCACGCCGAGCTTCTCGCCGGCGCANTGTCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTNCAACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCACAACGCGTGTTCGANCTACCGGGCCTGTGAATCGATCGATCACNGGGCCCGTGTCTAGTGTTACTTACCCTCGCTGTGTNAGTAGTTGTATGTTGATGCGTATTCTTTCGGAGGCGGCTGTTTGCGTTCGCGTTGCGCCTCAGTTATATGTGTTGAATCTTTTAATN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8243#0 ACCACCACCACCTCCCCCGTCCTCCTCTCCTCCACCGCAACCGCAACCACGGCCAGCCAC 60
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 GGGCCAAGCGAGTCACGACTGGCACAACGAGGCAAAAACACCATTGCTACCCCCGAGGCG 120
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TCCCTCTCAGCTAGCCCTGGCACCCGCACCACCTAGCGGCGGCGCCGTCGTGTTCGTGTC 180
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 GGCCAAGTCGTCAAGAAGCTAGCTAGTCATTGCCAGTGGGCGCATTGTGCTAGGGGATGG 240
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 CGAGAGGAGGAGGAGGAGGAGAGGAGGCGGCGGAGGAGGAGAGGGAGGTGAGCGAGGCGC 300
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TGACGGCGGACTCGTCGGCCGACGAGGAGTGCCGCCGCGGGAGCAGCAGCTCCAGCGCAA 360
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 GCTCCGGGGACGCCTCCAGCGAGTCCTACTGCCCGCCCGACGAGTGGCAGAAGGTGGCCA 420
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TCAAGACCTGCGTGTCGTCCGACCTCGTCGTCGTCTCGGCCGAGCCGGCCAAGGAGAAGA 480
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 AGCCGCCGCCGCCGCCGTCGTCGCCGCGTGTCGACGCCGCCCCGGCGGACAAGCACCACC 540
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 GGCCCTCAGAGATGGAGATGATGAAGGAGAGGTTCGCGAAGCTGCTGCTCGGCGAGGACA 600
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TGTCCGGCGGCGGCAAGGGCGTCTGCACCGCGCTCGCCATCTCCAACGCCATCACCAACC 660
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TCTGCGCGACGATATTTGGGCAGCTGTGGAGGCTGGAGCCGCTGCTGCCGGAGAAAAAGA 720
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 CGATGTGGCGGCGCGAGATGGACTGGCTGCTCTGCGTCAGCGACCACATCGTCGAGCTAG 780
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TCCCCACATGGCAGACATTCCCCGACGGGAGTAAGCTTGAGATCATGACAAGCAGGCCAC 840
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 GGTCTGATCTCTACATCAATCTGCCCGCACTCCGAAAGCTAGACCACATGCTCCTCGAAA 900
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TTCTGGAGAGCTTCAGGGACCCGGAATTCTGGTACGTCGACCAGGGGATTTGCCCGCCGG 960
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 ACCGCGACGGCAGCGCCCCCTTCATGCTAACGTTCCACCGCCGCGACGAGAAGTGGTGGC 1020
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TGCCCGTGCCCCGCGTCCCTCCCGGCGGCGTCGGCGAGACCACGAGGAGGCAGCTCGAGC 1080
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 ACAAGCGCGACTGCGCCAGCCAGATCTTCAAGGCCGCCATGGCCATCAACAGCAACGCCC 1140
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TCGCCGAAATGGACGTCCCCGACTCTTACCTCGACTCGTTACCCAAGAACGGGCGTGCGA 1200
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 CGCTGGGCGACATCATATACAGGTACATCACGTCGGACCAGTTCTCGCCGGACTGCCTGC 1260
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TCGACTGCCTCGACCTGTCGTCGGAGTACCAGGCGCTGGAGATCGCCAACCGCGTCGAGG 1320
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 CCTCCATCTACGTGTGGCGCCGGAGGGGCACGTCGGGCGCCGCGAGCCGCGCCGGAAACA 1380
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 AGTCGTCATGGGGCATCGTCAAGGACATGATCATGGACACGGAGAAGAGAGACGACCTCC 1440
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TCGCCGACCGCGCCGAGGGCCTCCTCATGTGCCTCAAGCAGAGGTTCCCCGGACTGACGC 1500
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 AGACCAGCCTGGACACGAGCAAGATTCAGTACAACAAGGATGTGGGGAAATCGATTCTGG 1560
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 AGAGCTACTCGAGGGTTCTGGAGAGCCTGGCGTCGAACATCATCGCGCGGATCGACGACC 1620
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 TGCTGTACGTCGACGAGCGGACAGG-CAGGCGGACTGCTTCCAACCGCGGGCGCCGGGAG 1679
consensus_8243#1 -----------------CGGACAGGACAGGCGGACTGCTTCCAACCGCGGGCGCCGGGAG 43
******** **********************************
consensus_8243#0 CGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGT 1739
consensus_8243#1 CGGCAAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGT 103
************************************************************
consensus_8243#0 GTCCACCTCGGGCACCCCGCCGCCGTACGCGACGGCGTACGCCACGCCGAGCTTCTCGCC 1799
consensus_8243#1 GTCCACCTCGGGCACCCCGCCGCCGTACGCGACGG-GTA-GCCACGCCGAGCTTCTCGCC 161
*********************************** *** ********************
consensus_8243#0 GGCGCANTGTCCGAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTNCA- 1858
consensus_8243#1 GGCGCANTGTC-GAGCCCATCCAACATCGGGAGGGCACTGCTGGTCGACCGGCGGTNCAA 220
*********** ***********************************************
consensus_8243#0 CGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGT 1918
consensus_8243#1 CGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCA-CAACGC-GT 278
************************************************** ****** **
consensus_8243#0 GTTCGACCTACCGGGCCTGTGAATCGATCGATCACGGGCCCCGTGTCTAGTGCTTTACTT 1978
consensus_8243#1 GTTCGANCTACCGGGCCTGTGAATCGATCGATCACNGGGCCCGTGTCTAGTG--TTACTT 336
****** **************************** ** ************* ******
consensus_8243#0 ACCCTCGCCTGTGTGCAGTAGTTGTAATGTTGTATGGCGTGATTTCTTCTCGGGAGGGCG 2038
consensus_8243#1 ACCCTCGC-TGTGTN-AGTAGTTGTA-TGTTG----ATGCGTATTCTTTCGGAGGCGGCT 389
******** ***** ********** ***** * * ***** * * ***
consensus_8243#0 GCCTGTTTTTGCCGTTTCGCCGTT-TCGCCGCCCTCCAGTTTTATGATGTGTTTTGACAG 2097
consensus_8243#1 GTTTGCGTTCGC-GTTGCGCCTCAGTTATATGTGTTGAATCTTTTAATN----------- 437
* ** ** ** *** **** * * * * ** * **
consensus_8243#0 TGCCTTTGTTAACTTGCTAGTGTTGTAAGAGTGCTTAAGTTCGATGTTGGTCGGATGGCA 2157
consensus_8243#1 ------------------------------------------------------------
consensus_8243#0 AAAGAGAACCATCGCGTTTGTGCAAACCACAGAGTTTTCT 2197
consensus_8243#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||