cluster # 8253

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Oryza sativa
cluster # 8253 cluster # 8253 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8253#0 length = 453 sequences # 1

consensus_8253#1 length = 447 sequences # 4

consensusID : consensus_8253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTAAAAACAATTTAATTTAACATCCCCAAACTGATTTTTTCACAATGTTACCCGATGACAATGGAAAAAGTAATTTAGGTCCAAGCGGATCATTGACGGGGGAAACAAAACATTGGTTGCACCAAAACACCCACCAGGGGGGCCAACAAGGAGCCCTTTCCGTTTTTGGACGAAAAAAAAAGTAAAACTTCCCGATGTGAAGGGAAACTGAATAATTTTATTAAACAATGATGATGATGGATAGGCTCCTTAGGACCCCCCCCGCCCTTAACGTTTTGCTGCTCCCATTTTGTCCATTGGAAGGCTCACTCGTAATCGTTTTAATCCTTTTCGCTGCCCTCGTGGTCATCCTCATAATTGACCTCGGACTTGGACTTGTCAAATTCCTCCTCGGGGTCCTC]

[+] EMBL CF308442             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTAAAAACAATTTAATTTAACATCCCCAAACTGATTTTTTCACAATGTTACCCGATGACAATGGAAAAAGTAATTTAGGTCCAAGCGGATCATTGACGGGGGAAACAAAACATTGGTTGCACCAAAACACCCACCAGGGGGGCCAACAAGGAGCCCTTTCCGTTTTTGGACGAAAAAAAAAGTAAAACTTCCCGATGTGAAGGGAAACTGAATAATTTTATTAAACAATGATGATGATGGATAGGCTCCTTAGGACCCCCCCCGCCCTTAACGTTTTGCTGCTCCCATTTTGTCCATTGGAAGGCTCACTCGTAATCGTTTTAATCCTTTTCGCTGCCCTCGTGGTCATCCTCATAATTGACCTCGGACTTGGACTTGTCAAATTCCTCCTCGGGGTCCTC]




>consensus_8253#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTAAAAAC
AATTTAATTTAACATCCCCAAACTGATTTTTTCACAATGTTACCCGATGACAATGGAAAA
AGTAATTTAGGTCCAAGCGGATCATTGACGGGGGAAACAAAACATTGGTTGCACCAAAAC
ACCCACCAGGGGGGCCAACAAGGAGCCCTTTCCGTTTTTGGACGAAAAAAAAAGTAAAAC
TTCCCGATGTGAAGGGAAACTGAATAATTTTATTAAACAATGATGATGATGGATAGGCTC
CTTAGGACCCCCCCCGCCCTTAACGTTTTGCTGCTCCCATTTTGTCCATTGGAAGGCTCA
CTCGTAATCGTTTTAATCCTTTTCGCTGCCCTCGTGGTCATCCTCATAATTGACCTCGGA
CTTGGACTTGTCAAATTCCTCCTCGGGGTCCTC

consensusID : consensus_8253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 447
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT----TA----AACATACCCAAACTGATTTTATCACAATGTTACCCCATGACAATGGAAAAAGTAATTTAGGTCCAAGCGGATCATTGACGGGGGAAACAAAACATTGGTTGCACCAAAACACCCACCAGGGGCCCCAACAAGGAGCCCTTTCCGTTTTAGGACGAA-AAAAAAAGTAAAACCTCCCGATGTGAAGGGAAACTGAATAATTTTATTAAACCATGATGATGATGGATAGGCTCCTTAAGACCCCCCCCCCCCTTAACGTTTTGCTGCTCCCATTTTGTCCACTGGAAGGCTCACTCGTAATCGTCTCCATCCTTTTCGCTGCCCTCGGGGTCATCCTCATAATTGACCTCGGACTTGGACTTGTCAAATTCCTCCTCGGCGTCCTCCTTTTCCTCCTTGGGGGGTGC]

[+] EMBL CF281684             [TTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTT    TAATCTAACATCCCCAAACTGATTTTATCACAATGTTACCCCATGACAATGGAAAAAGTAATTTAGGTCCAAGCGGATCATTGACGGGGGAAACAAAACATTGGCTGCACCAAATTTCCCACCAGGGGCCCCAACAAGGAGCCCTTTCCGTTTTAGGACTAATAAAAAAAGTAAAACCTCCCGATGTGAAGTGAAACTGAATGATTTTTTTAAACCATGATGATGATGGATAGGCTCCTTAGGACCCCCCCCCCCCTTAACGTTTTGCTGCTCCCATTTTGTCCACTGGAAGGCTCACTCGTAATCGTCTCCATCCTTTTCGCTGCCCTCGGGGTCATCCTCATAATTGACCTCGGACTTGGACTTGTCAAATTCCTCCTCGGCGTCCTCCTTTTCCTCCTTGGGGGGTGC]
[+] EMBL CF281945             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACA    AACATACCCAAACTGATTTTATCACAATGTTACCCCATGACAATGGAAAAAGTAATTTAGGTCCAAGCGGATCATTGACGGGGGAAACAAAACATTGGTTGCACCAAAACACCCACCAGGGGCCCCAACAAGGAGCGCTTTCCGTTTTTGGACGAA AAAAAAAGTAAAACCTCCCGATGTGAAGGGAAACTGAATAATTTTATTAAACCATGATGATGATGGATAGGCTCCTTAAGACCCCCCCCCCCCTTAACGTTTTGCTGCTCCCATTTTGTCCACTG                                                                                                                           ]
[+] EMBL CF277713             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT    TA    AACATACCCAAACTGATTTTATCACAATGTTACCCGATGACAATGGAAAAAGTAATTTAGGTACAAGCGGATCATTGACGGGGGAAACAAAACATTGGTTGCACCAAAACACCCACCAGGGGCCCCAACAAGGAGCGCTATCCGTTTTAGGACGAA AAAAAAAGTAAAACATCCCGATGTGAAGGGAAACTGAATAATTCTATTAAACAATGATGATGATGGATAGGCTCCTTAAGACCCCCCCCCCCCTTAACGTTTTGCTG                                                                                                                                             ]
[+] EMBL CF281300             [    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT    TA    AACATACCCAAACTGATTTTATCACAATGTTACCCGATGACAATGGAAAAAGTAATTTAGGTCCAAGCGGATCATTGACGGGGGAAACAAAACATTGGTTGCACCACAACACCCACCAGGGGCCCCAACAAGGACCCCTTTCCGTTTTAGGACGAA AAAAAAAGTAAAACATCCCGATGTGAAGGGAAACTGAATAATTCTATTAAACAATGATGGGGATGGATAGGCTCCTTAAGACCCCCCCCCCCCTTAACGTTTTGCTGCTCCCATTTTGTCCATTGGAAGGCTCACTCGTCATCGTTTTCATCCTTTTCGCTGCCCTCGGCGTCATCCTCATAATTGACCTCGG                                                       ]




>consensus_8253#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACATACCCAAACTGAT
TTTATCACAATGTTACCCCATGACAATGGAAAAAGTAATTTAGGTCCAAGCGGATCATTG
ACGGGGGAAACAAAACATTGGTTGCACCAAAACACCCACCAGGGGCCCCAACAAGGAGCC
CTTTCCGTTTTAGGACGAAAAAAAAAGTAAAACCTCCCGATGTGAAGGGAAACTGAATAA
TTTTATTAAACCATGATGATGATGGATAGGCTCCTTAAGACCCCCCCCCCCCTTAACGTT
TTGCTGCTCCCATTTTGTCCACTGGAAGGCTCACTCGTAATCGTCTCCATCCTTTTCGCT
GCCCTCGGGGTCATCCTCATAATTGACCTCGGACTTGGACTTGTCAAATTCCTCCTCGGC
GTCCTCCTTTTCCTCCTTGGGGGGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8253#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTAAAAAC 60
consensus_8253#1      ------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA--- 45
                                  *********************** *********************   

consensus_8253#0      AATTTAATTTAACATCCCCAAACTGATTTTTTCACAATGTTACCCGATGACAATGGAAAA 120
consensus_8253#1      ------------CATACCCAAACTGATTTTATCACAATGTTACCCCATGACAATGGAAAA 93
                                  *** ************** ************** **************

consensus_8253#0      AGTAATTTAGGTCCAAGCGGATCATTGACGGGGGAAACAAAACATTGGTTGCACCAAAAC 180
consensus_8253#1      AGTAATTTAGGTCCAAGCGGATCATTGACGGGGGAAACAAAACATTGGTTGCACCAAAAC 153
                      ************************************************************

consensus_8253#0      ACCCACCAGGGGGGCCAACAAGGAGCCCTTTCCGTTTTTGGACGAAAAAAAAAGTAAAAC 240
consensus_8253#1      ACCCACCAGGGGCCCCAACAAGGAGCCCTTTCCGTTTTAGGACGAAAAAAAAAGTAAAAC 213
                      ************  ************************ *********************

consensus_8253#0      TTCCCGATGTGAAGGGAAACTGAATAATTTTATTAAACAATGATGATGATGGATAGGCTC 300
consensus_8253#1      CTCCCGATGTGAAGGGAAACTGAATAATTTTATTAAACCATGATGATGATGGATAGGCTC 273
                       ************************************* *********************

consensus_8253#0      CTTAGGACCCCCCCCGCCCTTAACGTTTTGCTGCTCCCATTTTGTCCATTGGAAGGCTCA 360
consensus_8253#1      CTTAAGACCCCCCCCCCCCTTAACGTTTTGCTGCTCCCATTTTGTCCACTGGAAGGCTCA 333
                      **** ********** ******************************** ***********

consensus_8253#0      CTCGTAATCGTTTTAATCCTTTTCGCTGCCCTCGTGGTCATCCTCATAATTGACCTCGGA 420
consensus_8253#1      CTCGTAATCGTCTCCATCCTTTTCGCTGCCCTCGGGGTCATCCTCATAATTGACCTCGGA 393
                      *********** *  ******************* *************************

consensus_8253#0      CTTGGACTTGTCAAATTCCTCCTCGGGGTCCTC--------------------- 453
consensus_8253#1      CTTGGACTTGTCAAATTCCTCCTCGGCGTCCTCCTTTTCCTCCTTGGGGGGTGC 447
                      ************************** ******