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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence
[AGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTNCNGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTNCACGATCTTCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCAAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTTACCTCTTCTCTTGTTGAACTGGTTGGTGGTGGCTCCCTTCTGGTGTTTGGTATTTATTGGAGAGTCAATCAAGATTAGTTTAGGAATCGGTGACAATCAAGATTGTCAGAGTCGGATTGTTTAGGGTGTTTTTATTTTGGAATCTACTGTCTTAGGCCGTGTTTNGATCCAAAGTTTGGATCCAAACTTCAGTCCTTTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OS0011A [AGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTNCNGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTNCACGATCTTCGGTTAATTGAGGAGCACAGGGCGGTGC ]
[+] EMBL C97853 [ caATATTCCCTTCCCAATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTNCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTNTTGGTGAGGTNCCGCCGC GCTGCCGCCAGATCCGGCGGATNTAGGGTCGTCCATCGCCGTCCCGAGCGCCGTGGTGGNTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTCCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCAAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTTACCTCTTCTCTTGTTGAACTGGTTGGTGGTGGCTCCCTTCTGGTGTTTGGTATTTATTGGAGAGTCAATCAAGATTAGTTTAGGAATCGGTGACAATCAAGATTGTCAGAGTCGGATTGTTTAGGGTGTTTTTATTTTGGAATCTACTGTCTTAGGCCGTGTTTNGATCCAAAGTTTGGATCCAAACTTCAGTCCTTTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[GGAATACCTTGCGGCGTAGATCCAGCGGGCGGCGAGCTTCGCTGGTGGATAGCTTTTGTGCTGATTGCTCGAGGTCGGCGAGCGCTGGTCATCTTGACAGTGGCGAGACGGCTCGGAGAAGGGAAAGGTGGAGGCAGTGCGGTGGTTGGGTCACGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGGAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGATCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATAGTGTGTAGGGTCTTTTAATAAAGGAATCATACTGACTT]
[+] EMBL CB965641 [GGAATACCTTGCGGCGTAGATCCAGCGGGCGGCGAGCTTCGCTGGTGGATAGCTTTTGTGCTGATTGCTCGAGGTCGGCGAGCGCTGGTCATCTTGACAGTGGCGAGACGGCTCGGAGAAGGGAAAGGTGGAGGCAGTGCGGTGGTTGGGTCACGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGGAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGATCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATAGTGTGTAGGGTCTTTTAATAAAGGAATCATACTGACTT]
consensusID : consensus_8324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[TGCCAAATCTGATGAGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTCCCGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTCCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCNAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATNTACCTCTTCTCTTGTTGAAAAAAAANACCAAAAAGAGAAAAAAGAGAAAAAAAGACAAAATAAAATAACCTCGAGGGG]
[+] EMBL CA755254 [TGCCAAATCTGATGAGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCTCTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCGGTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCCGCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTCCCGAGCGCCGTGGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTCCGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCNAAATCTGATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCTGCTGTGTTTGCCGATAGTTCGGTTGCATTGCTTGCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGCTATNTACCTCTTCTCTTGTTGAAAAAAAANACCAAAAAGAGAAAAAAGAGAAAAAAAGACAAAATAAAATAACCTCGAGGGG]
consensusID : consensus_8324#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[AGACAAGGGGGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGTAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCATTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGCTCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATTGTGTGTAGGGTCTTTTTGTTTTGGAATCTACTGCCTTATTGCTATTGTTGTCATATGTTAATTGGTGTCATATTACTATTGCACATGTGTCCGATCAGATCAGCACAAAGTTTTGGCTATAGGATACTCTGGAAAAGCTATTGCAAAAAAAAAAAAAAA]
[-] EMBL CA761376 [AGACAAGGGGGGATCGGCTAGGGTGGCGAGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAAAAAAACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTTGTAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAAGGCTAAATCTGATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACTTATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCATTGATTGCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGCTCCCTTCTGGTGCTTGATATTTATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATTGTGTGTAGGGTCTTTTTGTTTTGGAATCTACTGCCTTATTGCTATTGTTGTCATATGTTAATTGGTGTCATATTACTATTGCACATGTGTCCGATCAGATCAGCACAAAGTTTTGGCTATAGGATACTCTGGAAAAGCTATTGCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8324#1 ----------------GGAATACCTTGCGGCGTAGATCCAGCGGGCGGCGAGCTTCGCTG 44
consensus_8324#3 ------------------------------------------------------------
consensus_8324#0 --------------AGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCT 46
consensus_8324#2 TGCCAAATCTGATGAGGAGTAACGGAAAGGGAGAGGTGGAACCTGCGGAAAACTTCTCCT 60
consensus_8324#1 GTGGATAGCTTTTGTGCTGATTGCTCGAGGTCGGCGA-GCGCTGGTCATCTTGACAGT-G 102
consensus_8324#3 ------------------------------------------------------------
consensus_8324#0 CTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCG 106
consensus_8324#2 CTCTCTCAACGTGGGTCCATATTCCCCTCCCCATCGCTGCACCTTTCTTCTGCATGGTCG 120
consensus_8324#1 GCGAGACGGCTCGGAGAAGGGAAAGGTGGAGGCAGTGCGGTGGTTGG---GTCACGGATC 159
consensus_8324#3 ----------------------------------------AGACAAG---G--GGGGATC 15
consensus_8324#0 GTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCC 166
consensus_8324#2 GTGATGTCGTGCCGGATCCGGCTATCCCGATCGAGTCCGGTCGCTTGTTGGTGAGGTGCC 180
* * * *
consensus_8324#1 GGCTAGGGTGGCG--AGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAA 217
consensus_8324#3 GGCTAGGGTGGCG--AGCCAGGGAGAATCGGCAGGCAGGCAAAGGAGGGAAAGATACCAA 73
consensus_8324#0 GCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTNCNGAGCGCCGT 226
consensus_8324#2 GCCGCGGCTGCCGCCAGATCCGGCGGATCTAGGGTCGTCCATCGCCGTCCCGAGCGCCGT 240
* * ** ** ** ** ** * *** * * ** * * **
consensus_8324#1 AAAA------ACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTT 271
consensus_8324#3 AAAA------ACGTTGTCAGAGGAAAAAAAACAAACTGTAGAAGGCAAATCTGGCAACTT 127
consensus_8324#0 GGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTNCACGATCTT 286
consensus_8324#2 GGTGGCTCTCACGTCGTCGGGGGCTGCCGAAGCCGGGCCGGGAAGCACGTGCACGATCTC 300
**** *** * ** ** * * *** * * **
consensus_8324#1 GGAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAA-GGCTAAATCT 330
consensus_8324#3 GTAGCTGCTATTTTGCTGGCAATCAGAACAGCAAAATCAAACTGCAAAA-GGCTAAATCT 186
consensus_8324#0 ----CGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCAAAATCT 342
consensus_8324#2 ----CGGTTAATTGAGGAGCACAGGGCGGTGCGGCCCTTGGCGGCACAGCGGCNAAATCT 356
* * ** ** *** * ** * *** * *** ******
consensus_8324#1 GATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 390
consensus_8324#3 GATGATAATGATCCGGTGACAATCGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 246
consensus_8324#0 GATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 402
consensus_8324#2 GATGATAATGATCCGGCGACAATGGCGTGTAATGATCCGGCGACAATGGCGTCTTGGACT 416
**************** ****** ************************************
consensus_8324#1 TATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCGTTGATT 450
consensus_8324#3 TATATTTTGCAGCTGTGCTTGCCGATAGTGGTTGGTGGCTCCCGTCTGGTTGCATTGATT 306
consensus_8324#0 TATATTTTGCTGCTGTGTTTGCCGATAGT----------------TCGGTTGCATTGCTT 446
consensus_8324#2 TATATTTTGCTGCTGTGTTTGCCGATAGT----------------TCGGTTGCATTGCTT 460
********** ****** *********** ****** *** **
consensus_8324#1 GCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGATCCCTTCTGGT-GC-TTGATATT 508
consensus_8324#3 GCTATTGATCTCTTCTCTTGTTGATCTGGTTGGTGGCTCCCTTCTGGT-GC-TTGATATT 364
consensus_8324#0 GCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGC 506
consensus_8324#2 GCTATTGACCTCTTCTCTTGTTGATCTGGTGGGTGGCTCCCGTCTGGTTGCGTTGATTGC 520
******** ********************* ***** **** ****** ** *****
consensus_8324#1 TATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATAGTGT 568
consensus_8324#3 TATTGGAGTCAATCAAAATTAGCTTAGGAATCGGTGAAAATTGTCAGAGTCGGATTGTGT 424
consensus_8324#0 TATTTACCTCTTCTCTTGTTGAACTGGTTGGTGGTGGCTCCCTTCTGGTGTTTGGTATTT 566
consensus_8324#2 TATNTACCTCTTCTCTTGTTGAA---------AAAAAANACCAAAAAGAGAA-AAAAGAG 570
*** ** **
consensus_8324#1 GTAGGGTCTTTTAATAAAGGAATCATACTGACTT-------------------------- 602
consensus_8324#3 GTAGGGTCTTTTTGTTTTGGAATC-TACTGCCTTATTGCTATTGTTGTCATATGTTAATT 483
consensus_8324#0 ATTGGAGAGTCAATCAAGATTAGTTTAGGAATCGGTGACAATCAAGATTGTCAGAGTCGG 626
consensus_8324#2 AAAAAAAGACAAAATAAAATAACCTCGAGGGG---------------------------- 602
*
consensus_8324#1 ------------------------------------------------------------
consensus_8324#3 GGTGTCATATTACTATTGCACATGTGTCCGATCAGATCAGCACAAAGTTTTGGCTATAGG 543
consensus_8324#0 ATTGTTTAGGGTGTTTTTATTTTGGAATCTACTGTCTTAGGCCGTGTTTNGATCCAAAGT 686
consensus_8324#2 ------------------------------------------------------------
consensus_8324#1 ------------------------------------------------------------
consensus_8324#3 ATACTCTGGAAAAGCTATTGCAAAAAAAAAAAAAAA------------------------ 579
consensus_8324#0 TTGGATCCAAACTTCAGTCCTTTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 746
consensus_8324#2 ------------------------------------------------------------
consensus_8324#1 ----
consensus_8324#3 ----
consensus_8324#0 AAAA 750
consensus_8324#2 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||