cluster # 8340

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Oryza sativa
cluster # 8340 cluster # 8340 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8340#0 length = 615 sequences # 4

consensus_8340#1 length = 440 sequences # 1

consensusID : consensus_8340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 615
fasta sequence

                              [TTTTTTATCAAAATTAATCAATCATATTAATTGAACAATTACCAAACATTCACAACAAAATACTAATACAAATACACACCCAATATTACACAACCACATATCCGACAATAATTAATGGTTATGACTTCTCCTTACAATGGAAAAC-ACATACATGTAAGTAAAAAA-CAGAGAGAAACACATATGCATGCTTGACTCTGTTGTACAATTAATTAGTCGAGCTAGC-AAGAAAACGCCATGCATTAAGCGAGCTGGTGTTTTATTCTAGCTGAATTTGCCATGCATGCAGAATCGTACATCTTAGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACAAACCCCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGAGGCTCTTCGTCTCGCACGGCCTGACTGATGAT-TGCGCTGGCGCCAACGCCTCAGTGGCAACAACAAGAAGTAGGAGGATGGCGATTGCTGGGAAAAATTTACGCATTGTCTCCATTACAATTATTATGTTAGTACTAACCACACACTTCTCAGAAAATTAATATATATTTTCAAATTATTCAGTCCCCCCCCTTGT]

[+] EMBL CA759979             [TTTTTTATCAAAATTAATCAATCATATTAATTGAACAATTACCAAACATTCACAACAAAATACTAATACAAATACACACCCAATATTACACAACCACATATCCGACAATAATTAATGGTTATGACTTCTCCTTACAATGGAAAAC ACATACATGTAAGTAAAAAA CAGAGAGAAACACATATGCATGCTTGACTCTGTTGTACAATTAATTAGTCGAGCTAGC AAGAAAACGCCATGCATTAAGCGAGCTGGTGTTTTATTCTAGCTGAATTTGCCATGCATGCAGAATCGTACATCTTAGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACAAACCCCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGAGGCTCTTCGTCTCGCACGGCCTGACTGATGAT TGCGCTGGCGCCAACGCCTCAGTGGCAACAACAAGAAGTAGGAGGATGGCGATTGCTGGGAAAAATTTACGCATTGTCTCCATTACAATTATTATGTTAGTACTAACCACACACTTCTCAGAAAATTAATATATATTTTCAAATTATTCAGTCCCCCCCCTTGT]
[+] EMBL CA759980             [TTTTTTATCAAAATTAATCAATCATATTAATTGAACAATTACCAAACATTCACAACAAAATACTAATACAAATACACACCCAATATTACACAACCACATATCCGACAATAATTAATGGTTATGACTTCTCCTTACAATGGAAAAC ACATACATGTAAGTAAAAAA CAGAGAGAAACACATATGCATGCTTGACTCTGTTGTACAATTAATTAGTCGAGCTAGC AAGAAAACGCCATGCATTAAGCGAGCTGGTGTTTTATTCTAGCTGAATTTGCCATGCATGCAGAATCGTACATCTTAGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACAAACCCCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGAGGCTCTTCGTCTCGCACGGCCTGACTGATGAT TGCGCTGGCGCCAACGCCTCAGTGGCAACAACAAGAAGTAGGAGGATGGCGATTGCTGGGAAAAATTTACGCATTGTCTCCATTACAATTATTATGTTAGTACTAACCACACACTTCTCAGAAAATTAATATATATTTTCAAATTATTCAGTCCCCCCCCTTGT]
[-] EMBL AU101269             [ TTTTTATCAAAATTAATCAATCATATTAATTGAACAATTACCAAACATTCACAACAAAATACTAATACAAATACACACCCAATATTACACAACCACATATCCGACAATAATTAATGGTTATGACTTCTCCTTACAATGGAAAACAACATACATGTAAGTAAAAAA CAGAGAGAAACACATATGCATGCTTGACTCTGTTGTACAATTAATTAGTCGAGCTAGC AAGAAAACGCCATGCATTAAGCGAGCTGGTGTTTTATTCTAGCTGAATTTGCCATGCATGCAGAATCGTACATCTTAGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACGAACCCCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGAGGCTCTTCGTCTCGCACGGCCTGACTGATGAT TGCGCTGGCGCCAACGCCTCAGTGGCAACAACAAGAAGTAGGAGGACGGCGATTGCTGGGAAGAATTTACGCATTGTCTCCATTACAATTATTATGTTAGTACTAACCACACACTTCTCAGAAAATTAATATATATTTT                         ]
[-] EMBL C73433               [                                                                                                                                                          GTAAGTAAAAAACCAGAGAGAAACACATATGCATGCTTGACTCTGTTGTACAATTAATTAGTCGAGCTAGCAAAGAAAACGCCATGCATTAAGCGAGCTGGTGTTTTATTCTAGCTGAATTTGCCATGCATGCAGAATCGTACATCTTAGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACGAACCCCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGAGGCTCTTCGTCTCGCACGGCCTGACTGATGATNTGCGCT GCGCCAACGCCTCAGTGGCAACAACAAGAAGTAGGAGGACGGCGATTGCTGGGAAGAATTTACGCATTGTCTCCATTACAATTATTATGTTAGTACTAACCACACACTTCTCAGAAAATTAATATATATTTTC                        ]




>consensus_8340#0
TTTTTTATCAAAATTAATCAATCATATTAATTGAACAATTACCAAACATTCACAACAAAA
TACTAATACAAATACACACCCAATATTACACAACCACATATCCGACAATAATTAATGGTT
ATGACTTCTCCTTACAATGGAAAACACATACATGTAAGTAAAAAACAGAGAGAAACACAT
ATGCATGCTTGACTCTGTTGTACAATTAATTAGTCGAGCTAGCAAGAAAACGCCATGCAT
TAAGCGAGCTGGTGTTTTATTCTAGCTGAATTTGCCATGCATGCAGAATCGTACATCTTA
GCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACAAACCC
CTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGAG
GCTCTTCGTCTCGCACGGCCTGACTGATGATTGCGCTGGCGCCAACGCCTCAGTGGCAAC
AACAAGAAGTAGGAGGATGGCGATTGCTGGGAAAAATTTACGCATTGTCTCCATTACAAT
TATTATGTTAGTACTAACCACACACTTCTCAGAAAATTAATATATATTTTCAAATTATTC
AGTCCCCCCCCTTGT

consensusID : consensus_8340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [TGCATGCAGAANCGTACATCTGCTTGCAAAAAAAAAAAGAAAAGAAAGAAAGTAAAAAAGAAAGAAATTAATAGCTCCATGCAGACCCTTGTTTGCATGGTCAATTAATTAGTTGCCAAGTGACCACATGAGATAATGATGGACAACCTTAGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACGAACCCCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGAGGCTCTTCGTCTCGCACGGCCTGACTGATGATTGCGTGGCGCCAACGCCTCAGTGGCAACAACAAGAAGTAGGAGGACGGCGATTGCTGGGAAGAATTTACGCATTGTCTCCATTACAATTATTATGTTAGTACTAACCACACACTTCTCANAAAATTAATATATATTTT]

[-] EMBL C73277               [TGCATGCAGAANCGTACATCTGCTTGCAAAAAAAAAAAGAAAAGAAAGAAAGTAAAAAAGAAAGAAATTAATAGCTCCATGCAGACCCTTGTTTGCATGGTCAATTAATTAGTTGCCAAGTGACCACATGAGATAATGATGGACAACCTTAGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACGAACCCCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGAGGCTCTTCGTCTCGCACGGCCTGACTGATGATTGCGTGGCGCCAACGCCTCAGTGGCAACAACAAGAAGTAGGAGGACGGCGATTGCTGGGAAGAATTTACGCATTGTCTCCATTACAATTATTATGTTAGTACTAACCACACACTTCTCANAAAATTAATATATATTTT]




>consensus_8340#1
TGCATGCAGAANCGTACATCTGCTTGCAAAAAAAAAAAGAAAAGAAAGAAAGTAAAAAAG
AAAGAAATTAATAGCTCCATGCAGACCCTTGTTTGCATGGTCAATTAATTAGTTGCCAAG
TGACCACATGAGATAATGATGGACAACCTTAGCATGGCTTGATGCAGATACAGTTTCGCA
CGAAGGTGCTGCACCTGCCGTCGACGAACCCCTCCGTCCGACACACGTTTGCGCAATTAT
CTTCCACCATGCAAAACCCCTCGAATCGGAGGCTCTTCGTCTCGCACGGCCTGACTGATG
ATTGCGTGGCGCCAACGCCTCAGTGGCAACAACAAGAAGTAGGAGGACGGCGATTGCTGG
GAAGAATTTACGCATTGTCTCCATTACAATTATTATGTTAGTACTAACCACACACTTCTC
ANAAAATTAATATATATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8340#0      TTTTTTATCAAAATTAATCAATCATATTAATTGAACAATTACCAAACATTCACAACAAAA 60
consensus_8340#1      ------------------------------------------------------------
                                                                                  

consensus_8340#0      TACTAATACAAATACACACCCAATATTACACAACCACATATCCGACAATAATTAATGGTT 120
consensus_8340#1      ------------------------------------------------------------
                                                                                  

consensus_8340#0      ATGACTTCTCCTTACAATGGAAAACACATACATGTAAGTAAAAAACAGAGAGAAACACAT 180
consensus_8340#1      --------TGCATGCAGAANCGTACATCTGCTTGCAAAAAAAAAAAGAAAAGAAAGA--- 49
                              * * * **       ***  * * ** **  ******   * ***** *   

consensus_8340#0      ATGCATGCTTGACTCTGTTGTACAATTAATTAGTCGAGCTAGCAAGAAAACGCCATGCAT 240
consensus_8340#1      AAGTAAAAAAGA-----------AAGAAATTAAT--AGCTC-CATGCAGAC-CCTTGT-T 93
                      * * *     **           **  ***** *  ****  ** * * ** ** **  *

consensus_8340#0      TAAGCGAGCTGGTGTTTTATTCTAGCTGAATTTGC-CATGCATGCAGAATCGTACATCTT 299
consensus_8340#1      TGCATGGTCAATTAATTAGTT---GCCAAGTGACCACATGAGATAATGATGGACAACCTT 150
                      *    *  *   *  **  **   **  * *   * ****     *  ** *   * ***

consensus_8340#0      AGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACAAACC 359
consensus_8340#1      AGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACGAACC 210
                      ******************************************************* ****

consensus_8340#0      CCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGA 419
consensus_8340#1      CCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGA 270
                      ************************************************************

consensus_8340#0      GGCTCTTCGTCTCGCACGGCCTGACTGATGATTGCGCTGGCGCCAACGCCTCAGTGGCAA 479
consensus_8340#1      GGCTCTTCGTCTCGCACGGCCTGACTGATGATTGCG-TGGCGCCAACGCCTCAGTGGCAA 329
                      ************************************ ***********************

consensus_8340#0      CAACAAGAAGTAGGAGGATGGCGATTGCTGGGAAAAATTTACGCATTGTCTCCATTACAA 539
consensus_8340#1      CAACAAGAAGTAGGAGGACGGCGATTGCTGGGAAGAATTTACGCATTGTCTCCATTACAA 389
                      ****************** *************** *************************

consensus_8340#0      TTATTATGTTAGTACTAACCACACACTTCTCAGAAAATTAATATATATTTTCAAATTATT 599
consensus_8340#1      TTATTATGTTAGTACTAACCACACACTTCTCANAAAATTAATATATATTTT--------- 440
                      ******************************** ******************         

consensus_8340#0      CAGTCCCCCCCCTTGT 615
consensus_8340#1      ----------------