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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 789 fasta sequence
[TTTTTTTTTTTTAACATGCCAAAAGTCCAAGACAGCAATTCAAAGAAAATTTAGCTCTAATGGCAGACAAGAGTCTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGATGGATATTGGCATTGAGTCCTATGATAAAAAGAGCAGCTTCAAAGCATGCGTAAAAGTTAAGGTCCTTTCTTTGGGGGACAAGTCATACATGAGTACATGAAACCCTCGCTGCTATTAGCAGCACAAGGAAACTTACTATTGAGATAATTCATCAACCAAACAAAAACTGGAAAAGTCGGTGCAGCGCGCAGCGGATTCATCCCCAGCAAATCACCACCCATCCTTCTTCAGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAAAAAACTGCTGGCCGGTGGAGGATGGTGAGTACCCCGGTGCAGTGGGGGAGTAACTTCCGCTAGGGCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTGGGCCCTCCAAATGTGGTGTATGGGCTTGTTGGGCTGTATGACGGACCTTGGTTGAGAATATGATGGTGAGGTAGGTGAGTATGTCGGCGATGTTGGGCTGTAATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAAGTTGGACTGTAATTTGGTGAAGTGGGGCAACGTTCGATCGATGAAGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGC]
[+] EMBL CF278136 [TTTTTTTTTTTTAACATGCCAAAAGTCCAAGACAGCAATTCAAAGAAAATTTAGCTCTAATGGCAGACAAGAGTCTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGATGGATATTGGCATTGAGTCCTATGATAAAAAGAGCAGCTTCAAAGCATGCGTAAAAGTTAAGGTCCTTTCTTTGGGGGACAAGTCATACATGAGTACATGAAACCCTCGCTGCTATTAGCAGCACAAGGAAACTTACTATTGAGATAATTCATCAACCAAACAAAAACTGGAAAAGTCGGTGCAGCGCGCAGCGGATTCATCCCCAGCAAATCACCACCCATCCTTCTTCAGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAAAAAACTGCTGGCCGGTGGAGGATGGTGAGTACCCCGGTGCAGTGGGGGAGTAACTTCCGCTAGGGCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTGGGCCCTCCAAATGTGGTGTATGGGCTTGTTGGGCTGTATGACGGACCTTGGTTGAGAAT ]
[-] EMBL AK062907 [ TTAGCTCTAATGGCAGACAAGAGTCTTACAACTTCAGCATAATTCCATCGAGCCATGGCACTCGATGGATATTGGCATTGAGTCCTATGATAAAAAGAGCAGCTTCAAAGCATGCGTAAAAGTTAAGGTCCTTTCTTTGGTGGACAAGTCATACATGAGTACATGAGACCCTCGCTGCTATTAGCAGCACAAGGAAACTTACTATTGAGATAATTCATCAACCAAACAAAAACTGGAAAAGTCGGTGCAGCGCGCAGCGGATTCATCCCCAGCAAATCACCACCCATCCTTCTTCAGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAGAGAACTGCTGGCCGGTGGAGGATGGTGAGTAGCCCGGTGCAGTGGGGGAGTAGCTTCCGCTAGGGCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTGGGCCCTCCAGATGTGGTGTATGGGCTTGTTGGGCTGTATGACGGA CTTGGTTGTGAATATGATGGTGAGGTAGGTGAGTATGTCGGCGATGTTGGGCTGTAATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAAGTTGGACTGTAATTTGGTGAAGTGGGGCAACGTTCGATCGATGAAGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGC]
consensusID : consensus_8373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence
[CACTTCGTGACATCAACTGGAAGTCTTATTCATGTTATTTGGGAAGAGGTTGGTCCAGATGCTGCTCGCAAGTTCTTAGGTCATACACAGTGGCTAGTCAACTACTGGCTTCTGCAAAATGGTTTCAGTATTGGAATTGGGGATACAATTGCAGATGCTGCCACCATGGTGAAGATTAATGAGACAATCTCAAAAGCTAAAGATGATGTGAAGGAGCTTATTATGCAAGCTCATGATAAACAATTGGAAGCTGAGCCAGGACGCACCATGATGGAATCATTCGAAAATAGAGTAAATCAGGTTCTTAACAAGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTGTCTGAAAGCAACAACCTGAAGGCTATGGTTACTGCAGGCTCAAAAGGAAGTTTCATCAATATTTCTCAAATGACTGCTTGTGTCGGACAGCAGAATGTTGAGGGCAAGCGGATCCCATTTGGCTTCATTGATCGAACGTTGCCCCACTTCACAAAAGATGATTATGGTCCTGAAAGTCGTGGGTTTGTGGAGAACTCTTACCTTAGAGGTCTGACACCACAAGAATTTTTCTTTCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAGACCTCTGAGACTGGATATATCCAGCGACGACTTGTGAAGGCTATGGAAGATATCATAGTGAAATATGATGGTACGGTAAGAAATTCCTTGGGAGACGTCATTCAGTTCTTATATGGAGAAGATGGCATGGATGCTGTTTGGATTGAGTCACAGAAGT]
[+] EMBL CB628989 [CACTTCGTGACATCAACTGGAAGTCTTATTCATGTTATTTGGGAAGAGGTTGGTCCAGATGCTGCTCGCAAGTTCTTAGGTCATACACAGTGGCTAGTCAACTACTGGCTTCTGCAAAATGGTTTCAGTATTGGAATTGGGGATACAATTGCAGATGCTGCCACCATGGTGAAGATTAATGAGACAATCTCAAAAGCTAAAGATGATGTGAAGGAGCTTATTATGCAAGCTCATGATAAACAATTGGAAGCTGAGCCAGGACGCACCATGATGGAATCATTCGAAAATAGAGTAAATCAGGTTCTTAACAAGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTGTCTGAAAGCAACAACCTGAAGGCTATGGTTACTGCAGGCTCAAAAGGAAGTTTCATCAATATTTCTCAAATGACTGCTTGTGTCGGACAGCAGAATGTTGAGGGCAAGCGGATCCCATTTGGCTTCATTGATCGAACGTTGCCCCACTTCACAAAAGATGATTATGGTCCTGAAAGTCGTGGGTTTGTGGAGAACTCTTACCTTAGAGGTCTGACACCACAAGAATTTTTCTTTCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAGACCTCTGAGACTGGATATATCCAGCGACGACTTGTGAAGGCTATGGAAGATATCATAGTGAAATATGATGGTACGGTAAGAAATTCCTTGGGAGACGTCATTCAGTTCTTATATGGAGAAGATGGCATGGATGCTGTTTGGATTGAGTCACAGAAGT]
[+] EMBL CB629015 [CACTT GGGACATCAACTGGAAGTCTTATTCATGTTATTTGGGAAGAGGTTGGTCCAGATGCTGCTCGCAAGTTCTTAGGTCATACACAGTGGCTAGTCAACTACTGGCTTCTGCAAAATGGTTTCAGTATTGGAATTGGGGATACAATTGCAGATGCTGCCACCATGGTGAAGATTAATGAGACAATCTCAAAAGCTAAAGATGATGTGAAGGAGCTTATTATGCAAGCTCATGATAAACAATTGGAAGCTGAGCCAGGACGCACCATGATGGAATCATTCGAAAATAGAGTAAATCAGGTTCTTAACAAGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTGTCTGAAAGCAACAACCTGAAGGCTATGGTTACTGCAGGCTCAAAAGGAAGTTTCATCAATATTTCTCAAATGACTGCTTGTGTCGGACAGCAGAATGTTGAGGGCAAGCGGATCCCATTTGGCTTCATTGATCGAACGTTGCCCCACTTCACAAAAGATGATTATGGTCCTGAAAGTCGTGGGTTTGTGGAGAACTCTTACCTTAGAGGTCTGACACCACAAGAATTTTTCTTTCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAGACCTCTGAGACTGGATATATCCAGCGACGACTTGTGAAGGCTATGGAAGATATCATAGTGAAATATGATGGTACGGTAAGAAATTCCTTGAGAGACGTCATTCAGTTCTTATATGGAGAAGATGGCATGGATGCTGTTTGGATTGAGTCACAG ]
consensusID : consensus_8373#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[TTTTCCACAAGTATAACATGCCAAAAGTCCAAGACAGCAATTCAGAGAAGATTTAGCTCTAATGGCAGACAAGAGTCTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGATGGATATTGGCATTGAGTCCTATGATAAAAAGAGCAGCTTCAAAGCATGCGTAAAAGTTAAGGTCCTTTCTTTGGTGGACAAGTCATACATGAGTACATGAGACCCTCGCTGCTATTAGCAGCACAAGGAAACTTACTATTGAGATAATTCATCAACCAAACAAAAACTGGAAAAGTCGGTGCAGCGCGCAGCGGATTCATCCCCAGCAAATCACCACCCATCCTTCTTCAGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAGAGAACTGCTGGCCGGTGGAGGATGGTGAGTAGCCCGGTGCAGTGGGGGAGTAGCTTCCGCTAGGGCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTGGGCCCTCCAGATGTGGTGTATGGGCTTGTTGGGCTGTATGACGGACTTGGTTGTGAATATGATGGTGATTTCTACTCCTTC]
[-] EMBL CF317581 [TTTTCCACAAGTATAACATGCCAAAAGTCCAAGACAGCAATTCAGAGAAGATTTAGCTCTAATGGCAGACAAGAGTCTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGATGGATATTGGCATTGAGTCCTATGATAAAAAGAGCAGCTTCAAAGCATGCGTAAAAGTTAAGGTCCTTTCTTTGGTGGACAAGTCATACATGAGTACATGAGACCCTCGCTGCTATTAGCAGCACAAGGAAACTTACTATTGAGATAATTCATCAACCAAACAAAAACTGGAAAAGTCGGTGCAGCGCGCAGCGGATTCATCCCCAGCAAATCACCACCCATCCTTCTTCAGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAGAGAACTGCTGGCCGGTGGAGGATGGTGAGTAGCCCGGTGCAGTGGGGGAGTAGCTTCCGCTAGGGCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTGGGCCCTCCAGATGTGGTGTATGGGCTTGTTGGGCTGTATGACGGACTTGGTTGTGAATATGATGGTGATTTCTACTCCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8373#0 --TTTTTTTTTTTTAACATGCCAAAAGTCCAAGACA-GCAATTCAAAGAAAATTTAGCTC 57
consensus_8373#2 TTTTCCACAAGTATAACATGCCAAAAGTCCAAGACA-GCAATTCAGAGAAGATTTAGCTC 59
consensus_8373#1 ----CACTTCGTGACATCAACTGGAAGTCTTATTCATGTTATTTGGGAAGAGGTTGGTCC 56
* * * ***** * ** * *** * ** * *
consensus_8373#0 TAATGGCAGACAAGAGT-CTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGAT 116
consensus_8373#2 TAATGGCAGACAAGAGT-CTTACAACTTTAGCATAATTCCATCGAGCCATGGCACTCGAT 118
consensus_8373#1 AGATGCTGCTCGCAAGTTCTTAGGTCATACACAGTGGCTAGTCAACTACTGGCTTCTGCA 116
*** * *** **** * * ** ** * **** *
consensus_8373#0 GGATA---TTGGCATTGAGTCCTATGATAAAA--AGAGCAGCTTCAAAGCATGCGTAAAA 171
consensus_8373#2 GGATA---TTGGCATTGAGTCCTATGATAAAA--AGAGCAGCTTCAAAGCATGCGTAAAA 173
consensus_8373#1 AAATGGTTTCAGTATTGGAATTGGGGATACAATTGCAGATGCTGCCAC-CATG-GTGAAG 174
** * * **** **** ** ** *** * * **** ** **
consensus_8373#0 GTTAAGGTCCTTTCTTTGGGGGACAAGTCATACATGAGTACATGAAACCCTCGCTGCTAT 231
consensus_8373#2 GTTAAGGTCCTTTCTTTGGTGGACAAGTCATACATGAGTACATGAGACCCTCGCTGCTAT 233
consensus_8373#1 ATTAATGAGACAATCTCAAAAGCTAAAGATGATGTGAAGGAGCTTATTATGCAAGCTCAT 234
**** * * * ** * *** * **
consensus_8373#0 TAGCAGCACAAGGAAACTTACTATTGAGATAATTCATC--AACCAAACAAAAACTGGAAA 289
consensus_8373#2 TAGCAGCACAAGGAAACTTACTATTGAGATAATTCATC--AACCAAACAAAAACTGGAAA 291
consensus_8373#1 GATAAACAATTGGAAGCTGAGCCAGGACGCACCATGATGGAATCATTCGAAAATAGAGTA 294
* * ** **** ** * ** * ** ** * **** * *
consensus_8373#0 AGTCGG---TGCAGCGCGCAGCGGATTCATCCCCAGCA-AATCACCACCCATCCTTCTTC 345
consensus_8373#2 AGTCGG---TGCAGCGCGCAGCGGATTCATCCCCAGCA-AATCACCACCCATCCTTCTTC 347
consensus_8373#1 AATCAGGTTCTTAACAAGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTGTCT 354
* ** * * * * ** * ** * * * *** ** *
consensus_8373#0 AGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAA-------AAAAC 398
consensus_8373#2 AGCGGCTTCATTTTGCCTTCTCCTTGTCCTTGTCGGCAGCTTGGGGAG-------AGAAC 400
consensus_8373#1 GAAAGCAACAACCTGAAGGCTA-TGGTTACTGCAGGCTCAAAAGGAAGTTTCATCAATAT 413
** ** ** ** * ** ** *** ** * * *
consensus_8373#0 TGCT-GGCCGGTGGAGGATGGTGAGTACCCCGGTGCAGTGGGGGAGTAACTTCCGCTAGG 457
consensus_8373#2 TGCT-GGCCGGTGGAGGATGGTGAGTAGCCCGGTGCAGTGGGGGAGTAGCTTCCGCTAGG 459
consensus_8373#1 TTCTCAAATGACTGCTTGTGTCGGACAGCAGAATGTTGAGGGCAAGCGGATCCCATTTGG 473
* ** * * ** * * * ** * *** ** * ** * **
consensus_8373#0 GCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTG-GGCCCTCCAAATGTGGTGTATG 516
consensus_8373#2 GCTGTAATTCGGAGATGTTGGGCTATAATCTGGGCTG-GGCCCTCCAGATGTGGTGTATG 518
consensus_8373#1 -CTTCATTGATCGAACGTTGCCCCACTTCACAAAAGATGATTATGGTCCTGAAAGTCGTG 532
** * * * **** * * * * ** **
consensus_8373#0 GGCTTGTTGGGCTGTATGACGGACCTTGGTTGAGAATATGATGGTGAGGTAGGTGAGTAT 576
consensus_8373#2 GGCTTGTTGGGCTGTATGACGGAC-TTGGTTGTGAATATGATGGTGATTTCTACTCCTTC 577
consensus_8373#1 GGTTTGTGGAGAACTCTTACCTTAGAGGTCTGACACCACAA----GAATTTTTCTTTCAT 588
** **** * * * * ** * ** * * * ** *
consensus_8373#0 GTCGGCGATGTTGGGCTGTAATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTG 636
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 GCTATGGGTGGTAGAGAA-GGTCTGATTGATACTGCTGTGAAGACCTCTGAGACTGGATA 647
consensus_8373#0 CTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAA 696
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 TATCCAGCG-ACGACTTGTGAAGGCTATGGAAGATATCATAGTGAA-ATATGATGGTACG 705
consensus_8373#0 GTTGGACTGTAATTTGGTGAAGTGGGGCAACGTTCGATCGATGAAGCCAAATGGGATCCG 756
consensus_8373#2 ------------------------------------------------------------
consensus_8373#1 GTAAGAAATTCCTTGGGAGACGTCATTCAGTTCTTATATGGAGAAGATGGCATGGATGCT 765
consensus_8373#0 CTTGCCCTCAACATTCTGCTGTCCGACACAAGC 789
consensus_8373#2 ---------------------------------
consensus_8373#1 GTTTGGATTGAGTCACAGAAGT----------- 787
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||