cluster # 838

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Oryza sativa
cluster # 838 cluster # 838 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_838#0 length = 405 sequences # 1

consensus_838#1 length = 350 sequences # 1

consensusID : consensus_838#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [TTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATCTCATGCTCCCATTGCATTACGAATTATTTGCTTATTCACCAAATTACATCACTGGCTAGCCCGACCCAAAAAAACTGGGCATAAATAAAATTTAAACCGCCGCCAGCACCACCATAGCGAAAAAAAATGGCCCCACAAGGGCAAACATCCCTTGGATACAAATGTTTTTTTGTTCATGACCCCACCGAAGAACCGAAACTTAGACCGAATAAACCCCTAGAGCTCAACTTGGAGTTTCAGGAATATGAAACAAGAACCCACTAAGGGGTTGCGTGTTGAAACATGCCTAATCCCCACCAAAATGGCCAACGCGGGATGACAGGATGATGCCCACCATGAACCCAT]

[+] EMBL CF316712             [TTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATCTCATGCTCCCATTGCATTACGAATTATTTGCTTATTCACCAAATTACATCACTGGCTAGCCCGACCCAAAAAAACTGGGCATAAATAAAATTTAAACCGCCGCCAGCACCACCATAGCGAAAAAAAATGGCCCCACAAGGGCAAACATCCCTTGGATACAAATGTTTTTTTGTTCATGACCCCACCGAAGAACCGAAACTTAGACCGAATAAACCCCTAGAGCTCAACTTGGAGTTTCAGGAATATGAAACAAGAACCCACTAAGGGGTTGCGTGTTGAAACATGCCTAATCCCCACCAAAATGGCCAACGCGGGATGACAGGATGATGCCCACCATGAACCCAT]




>consensus_838#0
TTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATC
TCATGCTCCCATTGCATTACGAATTATTTGCTTATTCACCAAATTACATCACTGGCTAGC
CCGACCCAAAAAAACTGGGCATAAATAAAATTTAAACCGCCGCCAGCACCACCATAGCGA
AAAAAAATGGCCCCACAAGGGCAAACATCCCTTGGATACAAATGTTTTTTTGTTCATGAC
CCCACCGAAGAACCGAAACTTAGACCGAATAAACCCCTAGAGCTCAACTTGGAGTTTCAG
GAATATGAAACAAGAACCCACTAAGGGGTTGCGTGTTGAAACATGCCTAATCCCCACCAA
AATGGCCAACGCGGGATGACAGGATGATGCCCACCATGAACCCAT

consensusID : consensus_838#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATCTCATGCCCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATTACTGTTTAACCCAACCCAAAAAAACTGGGCCTAAATAAAAATCAAACCGCCGCCCGCCCCCCCATAACGAAAAAAAATGGGCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCATGACCCCACCGAAAAACAGAAACTTAGACCGAATAAACCCCTAAAGCTCAACTTGGAGTTTCAGGAATATGAAACAAAAACCCCCTTAGGGTTTGGGTGTTGAAACATGCCTAATCCCCA]

[+] EMBL CF314218             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATCTCATGCCCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATTACTGTTTAACCCAACCCAAAAAAACTGGGCCTAAATAAAAATCAAACCGCCGCCCGCCCCCCCATAACGAAAAAAAATGGGCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCATGACCCCACCGAAAAACAGAAACTTAGACCGAATAAACCCCTAAAGCTCAACTTGGAGTTTCAGGAATATGAAACAAAAACCCCCTTAGGGTTTGGGTGTTGAAACATGCCTAATCCCCA]




>consensus_838#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATCTCATGC
CCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATTACTGTTTAACCCAACC
CAAAAAAACTGGGCCTAAATAAAAATCAAACCGCCGCCCGCCCCCCCATAACGAAAAAAA
ATGGGCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCATGACCCCACC
GAAAAACAGAAACTTAGACCGAATAAACCCCTAAAGCTCAACTTGGAGTTTCAGGAATAT
GAAACAAAAACCCCCTTAGGGTTTGGGTGTTGAAACATGCCTAATCCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_838#0      TTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATC 60
consensus_838#1      ------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAAAAAAATC 54
                           ****  ************************************************

consensus_838#0      TCATGCTCCCATTGCATTACGAATTATTTGCTTATTCACCAAATTACATCACTGGCTAGC 120
consensus_838#1      TCATGCCCCCATTGCATTACAAATTATTTGCTTATTCACCAAATTACATTACTGTTTAAC 114
                     ****** ************* **************************** ****  ** *

consensus_838#0      CCGACCCAAAAAAACTGGGCATAAATAAAATTTAAACCGCCGCCAGCACCACCATAGCGA 180
consensus_838#1      CCAACCCAAAAAAACTGGGCCTAAATAAAAATCAAACCGCCGCCCGCCCCCCCATAACGA 174
                     ** ***************** ********* * *********** ** ** ***** ***

consensus_838#0      AAAAAAATGGCCCCACAAGGGCAAACATCCCTTGGATACAAATGTTTTTTTGTTCATGAC 240
consensus_838#1      AAAAAAATGGGCCCCCAAGGGCAAACATCCCTTGGATACAAAAGTTTTTTTGTTCATGAC 234
                     ********** *** *************************** *****************

consensus_838#0      CCCACCGAAGAACCGAAACTTAGACCGAATAAACCCCTAGAGCTCAACTTGGAGTTTCAG 300
consensus_838#1      CCCACCGAAAAACAGAAACTTAGACCGAATAAACCCCTAAAGCTCAACTTGGAGTTTCAG 294
                     ********* *** ************************* ********************

consensus_838#0      GAATATGAAACAAGAACCCACTAAGGGGTTGCGTGTTGAAACATGCCTAATCCCCACCAA 360
consensus_838#1      GAATATGAAACAAAAACCCCCTTAGGGTTTGGGTGTTGAAACATGCCTAATCCCCA---- 350
                     ************* ***** ** **** *** ************************    

consensus_838#0      AATGGCCAACGCGGGATGACAGGATGATGCCCACCATGAACCCAT 405
consensus_838#1      ---------------------------------------------