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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8392#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1549 fasta sequence
[GATGCCGCCGCCGCGACCGCGACCGCCATGGCGTACCGCCGGAAGCCGCAGCCTCCGCAGACGCCGCCGTCCTTGGACCACCACCACCACCACCACACCCCCTCCGTGGGCCCCTCGTCCCCGCCGCAGGACTCCCTCGCCGCGCAGGCCATGCGCGCCTCCGCCGCGCACCGCGACGCCTCCTCCCTCTCCTCGGCCTACTCCTCCTCCTCCGCCTCCGCGGCCGCCGCCGCCGCCGCGGCTCGCCGGGGCCACCACGAGCCCTCCGTCTCCACGCCTTCCCCCGGTTCTTCGGGTTATGAATACACATCCATGAAGAACTTGAATGAGGCTAAGTACGGATTTTGGGGGGCCCTTGCTCGGAAAGCCAAGTCTTTTCTGGACGAGGATGGTTCACCAGGGCAGTATGATTCCCCGGCGAGGCAGCAGCCGTCAAGAGATGCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAACAACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCATAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGACGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAAGAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATCTTCCACAAAATCCACTTGACTACGAAACTCAATTGAAGGCATCTCGCGACGTTGCAAATGCCATGGCAGCAAAAGCAAAGCTGCTATTACGTGAGCTGAAGACTGTGAAGGCCGATTTAGCTTTTGCAAAGGAACGTTGCGCTCAGCTTGAAGATGAAAATAAGATTTTGCGGGAAAGTCACGATAAGGGTGATAACCCTGAAGATGATGATCTGATCCGCCTCCAACTAGAGACACTATTAGCTGAGAAGGCACGGCTCGCACATGAGAATTCGGTGTACGCTCGAGAGAATAGATTCCTACGAGAAATTGTTGAGTACCACCAACTTACTATGCAGGATGTTATATATGTGGATGAAGGCATTGAAGAGGTCACTGAGGTCTACCCTACACAAGTATTACCACCTGCACCTTCTCGGGCTGGTTCAGGCCTTGGTCGCTCTGTAACCCCAGCTACTCCCAAGACTGCCAGCTCATCACCTTCATCAACATCCATTGTTGTACCAGAAACTTGTCCGGTCGTTCCAGCCTCCCCAAAGTCGCTTTCTCGGACTTCATCTAAGCAATAGATCAAGCCCGGCACCACCAACCATGCTGAAGATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAGATGTTTGTATGATCCGGTGTAACTTACACAGTATTTATAATTTTACTGCATCATCGATTTGGTAAAAAAAAAAAAAANAAAAAANAAN]
[+] EMBL AK071944 [GATGCCGCCGCCGCGACCGCGACCGCCATGGCGTACCGCCGGAAGCCGCAGCCTCCGCAGACGCCGCCGTCCTTGGACCACCACCACCACCACCACACCCCCTCCGTGGGCCCCTCGTCCCCGCCGCAGGACTCCCTCGCCGCGCAGGCCATGCGCGCCTCCGCCGCGCACCGCGACGCCTCCTCCCTCTCCTCGGCCTACTCCTCCTCCTCCGCCTCCGCGGCCGCCGCCGCCGCCGCGGCTCGCCGGGGCCACCACGAGCCCTCCGTCTCCACGCCTTCCCCCGGTTCTTCGGGTTATGAATACACATCCATGAAGAACTTGAATGAGGCTAAGTACGGATTTTGGGGGGCCCTTGCTCGGAAAGCCAAGTCTTTTCTGGACGAGGATGGTTCACCAGGGCAGTATGATTCCCCGGCGAGGCAGCAGCCGTCAAGAGATGCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAACAACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCATAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGACGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAAGAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATCTTCCACAAAATCCACTTGACTACGAAACTCAATTGAAGGCATCTCGCGACGTTGCAAATGCCATGGCAGCAAAAGCAAAGCTGCTATTACGTGAGCTGAAGACTGTGAAGGCCGATTTAGCTTTTGCAAAGGAACGTTGCGCTCAGCTTGAAGATGAAAATAAGATTTTGCGGGAAAGTCACGATAAGGGTGATAACCCTGAAGATGATGATCTGATCCGCCTCCAACTAGAGACACTATTAGCTGAGAAGGCACGGCTCGCACATGAGAATTCGGTGTACGCTCGAGAGAATAGATTCCTACGAGAAATTGTTGAGTACCACCAACTTACTATGCAGGATGTTATATATGTGGATGAAGGCATTGAAGAGGTCACTGAGGTCTACCCTACACAAGTATTACCACCTGCACCTTCTCGGGCTGGTTCAGGCCTTGGTCGCTCTGTAACCCCAGCTACTCCCAAGACTGCCAGCTCATCACCTTCATCAACATCCATTGTTGTACCAGAAACTTGTCCGGTCGTTCCAGCCTCCCCAAAGTCGCTTTCTCGGACTTCATCTAAGCAATAGATCAAGCCCGGCACCACCAACCATGCTGAAGATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAGATGTTTGTATGATCCGGTGTAACTTACACAGTATTTATAATTTTACTGCATCA ]
[+] EMBL AK105270 [ CGCCGCCGCGACCGCGACCGCCATGGCGTACCGCCGGAAGCCGCAGCCTCCGCAGACGCCGCCGTCCTTGGACCACCACCACCACCACCACACCCCCTCCGTGGGCCCCTCGTCCCCGCCGCAGGACTCCCTCGCCGCGCAGGCCATGCGCGCCTCCGCCGCGCACCGCGACGCCTCCTCCCTCTCCTCGGCCTACTCCTCCTCCTCCGCCTCCGCGGCCGCCGCCGCCGCCGCGGCTCGCCGGGGCCACCACGAGCCCTCCGTCTCCACGCCTTCCCCCGGTTCTTCGGGTTATGAATACACATCCATGAAGAACTTGAATGAGGCTAAGTACGGATTTTGGGGGGCCCTTGCTCGGAAAGCCAAGTCTTTTCTGGACGAGGATGGTTCACCAGGGCAGTATGATTCCCCGGCGAGGCAGCAGCCGTCAAGAGATGCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAACAACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCATAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGACGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAAGAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATCTTCCACAAAATCCACTTGACTACGAAACTCAATTGAAGGCATCTCGCGACGTTGCAAATGCCATGGCAGCAAAAGCAAAGCTGCTATTACGTGAGCTGAAGACTGTGAAGGCCGATTTAGCTTTTGCAAAGGAACGTTGCGCTCAGCTTGAAGATGAAAATAAGATTTTGCGGGAAAGTCACGATAAGGGTGATAACCCTGAAGATGATGATCTGATCCGCCTCCAACTAGAGACACTATTAGCTGAGAAGGCACGGCTCGCACATGAGAATTCGGTGTACGCTCGAGAGAATAGATTCCTACGAGAAATTGTTGAGTACCACCAACTTACTATGCAGGATGTTATATATGTGGATGAAGGCATTGAAGAGGTCACTGAGGTCTACCCTACACAAGTATTACCACCTGCACCTTCTCGGGCTGGTTCAGGCCTTGGTCGCTCTGTAACCCCAGCTACTCCCAAGACTGCCAGCTCATCACCTTCATCAACATCCATTGTTGTACCAGAAACTTGTCCGGTCGTTCCAGCCTCCCCAAAGTCGCTTTCTCGGACTTCATCTAAGCAATAGATCAAGCCCGGCACCACCAACCATGCTGAAGATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAGATGTTTGTATGATCCGGTGTAACTTACACAGTATTTATAATTTTACTGCATCA ]
[+] EMBL CA764661 [ aaggggGGGAAAGT NCGATAAGGGTGATAACCCTGAAGATGATGATCTGATCCGCCTCCAACTAGAGACACTATTAGCTGAGAAGGCACGGCTCGCACATGAGAATTCGGTGTACGCTCGAGAGAATAGATTCCTACGAGAAATTGTTGAGTACCACCAACTTACTATGCAGGATGTCATATATGTGGATGAAGGCATTGAAGAGGTCACTGAGGTCTACCCTACACAAGTATTACCACCTGCACCTTCTCGGGCTGGTTCAGGCCTTGGTCGCTCTGTAACCCCAGCTACTCCCAAGACTGCCAGCTCATCACCTTCATCAACATCCATTGTTGTACCAGAAACTTGTCCGGTCGTTCCAGCCTCCCCAAAGTCGCTTTCTCGGACTTCATCTAAGCAACAGATCAAGCCCGGCACCACCAACCATGCTGAAGATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAGATGNTTGTATGATCCGGTGTAACTTACACAGTATTTATAATTTTACTGCATCATC ]
[+] EMBL AU093584 [ ATGCTGAAGATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAGCTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCGGACAAATGATGTTCATGCCTGAAATGTTTGTATGATCCGGTGTAACTTACACAGTATTTATAATTTTNCTGCATCATCGATTTGGTAAAAAAAAAAAAAANAAAAAANAAN]
consensusID : consensus_8392#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence
[CTCNCNCNGGNCGAGGCAGCAGCCGTNCAATCATGTNCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAACAACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCATAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGACGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAAGAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATCTTCCACAAAATCCACTTGACTACGGAACTCAATTGAAGGCATCTCGCGACGTTGCAAATG]
[+] EMBL OSC111051 [CTCNCNCNGGNCGAGGCAGCAGCCGTNCAATCATGTNCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAACAACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCATAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGACGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAAGAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATCTTCCACAAAATCCACTTGACTACGGAACTCAATTGAAGGCATCTCGCGACGTTGCAAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8392#0 GATGCCGCCGCCGCGACCGCGACCGCCATGGCGTACCGCCGGAAGCCGCAGCCTCCGCAG 60
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 ACGCCGCCGTCCTTGGACCACCACCACCACCACCACACCCCCTCCGTGGGCCCCTCGTCC 120
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 CCGCCGCAGGACTCCCTCGCCGCGCAGGCCATGCGCGCCTCCGCCGCGCACCGCGACGCC 180
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 TCCTCCCTCTCCTCGGCCTACTCCTCCTCCTCCGCCTCCGCGGCCGCCGCCGCCGCCGCG 240
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 GCTCGCCGGGGCCACCACGAGCCCTCCGTCTCCACGCCTTCCCCCGGTTCTTCGGGTTAT 300
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 GAATACACATCCATGAAGAACTTGAATGAGGCTAAGTACGGATTTTGGGGGGCCCTTGCT 360
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 CGGAAAGCCAAGTCTTTTCTGGACGAGGATGGTTCACCAGGGCAGTATGATTCCCCGGCG 420
consensus_8392#1 -----------------------------------------------CTCNCNCNGGNCG 13
* * **
consensus_8392#0 AGGCAGCAGCCGTCAAG--AGATGCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAAC 478
consensus_8392#1 AGGCAGCAGCCGTNCAATCATGTNCGCCGCCGGTTGGTGTCCAGTATACACGCTCACAAC 73
************* * * * ************************************
consensus_8392#0 AACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCA 538
consensus_8392#1 AACCACCGTCTGAAACATGGAAATCCGAGACACCTCCATCTCATAAGAGGTCCGAGGCCA 133
************************************************************
consensus_8392#0 TAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGA 598
consensus_8392#1 TAGCTTCCTCCCTCAACTATATTGGTGGCACAATAAAAAGTGCACTTGAAGAAGGCCGGA 193
************************************************************
consensus_8392#0 CGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAA 658
consensus_8392#1 CGATTGTAGAAAATAAAACAGCCGACATTATTCATGAAACACGCAAATTGAACATAAGAA 253
************************************************************
consensus_8392#0 GAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATC 718
consensus_8392#1 GAAAAGGAGCTGGCTCAACTACACAAGGAGAAGCTCCACAAAGATTTACTCAAAGGAATC 313
************************************************************
consensus_8392#0 TTCCACAAAATCCACTTGACTACGAAACTCAATTGAAGGCATCTCGCGACGTTGCAAATG 778
consensus_8392#1 TTCCACAAAATCCACTTGACTACGGAACTCAATTGAAGGCATCTCGCGACGTTGCAAATG 373
************************ ***********************************
consensus_8392#0 CCATGGCAGCAAAAGCAAAGCTGCTATTACGTGAGCTGAAGACTGTGAAGGCCGATTTAG 838
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 CTTTTGCAAAGGAACGTTGCGCTCAGCTTGAAGATGAAAATAAGATTTTGCGGGAAAGTC 898
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 ACGATAAGGGTGATAACCCTGAAGATGATGATCTGATCCGCCTCCAACTAGAGACACTAT 958
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 TAGCTGAGAAGGCACGGCTCGCACATGAGAATTCGGTGTACGCTCGAGAGAATAGATTCC 1018
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 TACGAGAAATTGTTGAGTACCACCAACTTACTATGCAGGATGTTATATATGTGGATGAAG 1078
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 GCATTGAAGAGGTCACTGAGGTCTACCCTACACAAGTATTACCACCTGCACCTTCTCGGG 1138
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 CTGGTTCAGGCCTTGGTCGCTCTGTAACCCCAGCTACTCCCAAGACTGCCAGCTCATCAC 1198
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 CTTCATCAACATCCATTGTTGTACCAGAAACTTGTCCGGTCGTTCCAGCCTCCCCAAAGT 1258
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 CGCTTTCTCGGACTTCATCTAAGCAATAGATCAAGCCCGGCACCACCAACCATGCTGAAG 1318
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 ATTAAAAGGTGGTTAGTGGTGCGATACAATCCGGATGCCATTGCAAATGTAAAACCAAAG 1378
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 CTGCGCCGTTGCTGTGCCCTGTATGTTAGTCTCTGATGAGTTGTGTCCTGGAAATGTGCG 1438
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 GACAAATGATGTTCATGCCTGAGATGTTTGTATGATCCGGTGTAACTTACACAGTATTTA 1498
consensus_8392#1 ------------------------------------------------------------
consensus_8392#0 TAATTTTACTGCATCATCGATTTGGTAAAAAAAAAAAAAANAAAAAANAAN 1549
consensus_8392#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||