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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1607 fasta sequence
[GTTCACAAGGGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCATCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACACTGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTATGAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTGGATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCACGAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGATGCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAAACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGACATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGCTGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGATGGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCGCCATTGTTCACCTCCATCATCGACGAGGGCAGGTGAAGATAACCGAGAAGCAGGGCAAGGAAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGGTAGGAGGAAGAGGGAGTAGGTGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTTCTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTAAGATAATGAATCGAAATAGAGATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTGGAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGATCACATGGTGTTACAGGTGTTTGGGCATCGCTTCCTCGCTGGAATTTGGTCGAGCCGTGTTGTTGGGTTGACCTAGGTGGTGTGAGTTCATGAGCGTGCCTCGTGCGCTTTGCTTGCTTAATTTCCTTCCCTTTGGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAAGAGGGTGTGCCCTTTTCACAGTACACACCACGCAGATGAAGGGCTAACAAAGTAGCAATTGCTTTTGTGTAAATATTCTTTTGTTAATATCATCATTAGAAGCNCGAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK111453 [GTTCACAAGGGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCATCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACACTGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTATGAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTGGATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCACGAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGATGCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAAACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGACATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGCTGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGATGGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCGCCATTGTTCACCTCCATCATCGACGAGGGCAGGTGAAGATAACCGAGAAGCAGGGCAAGGAAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGGTAGGAGGAAGAGGGAGTAGGTGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTTCTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTAAGATAATGAATCGAAATAGAGATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTGGAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGATCACATGGTGTTACAGGTGTTTGGGCATCGCTTCCTCGCTGGAATTTGGTCGAGCCGTGTTGTTGGGTTGACCTAGGTGGTGTGAGTTCATGAGCGTGCCTCGTGCGCTTTGCTTGCTTAATTTCCTTCCCTTTGGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAAGAGGGTGTGCCCTTTTCACAGTACACACCACGCAGATGAAGGGCTAACAAAGTAGCAATTGCTTTTGTGTAAATATTCTTTTGTTAATATCATCATTAGAAGC ]
[+] EMBL C99190 [ GANCACATGGTGTTANAGGTGTTTGGGCANCGCTTCCTCGCTGGAANTTGGTCGAACCGTGTTGTTGGGTTGACCTAGGTGGTGTGAGTTCATGAACGTGCCNCGTGCGCTTTGCTTGCTTAANTTCCTTCCCTTTGGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAANAGGGTGTGCCCTTTTCACAGTACACACCACGCAGATGAAGGGCTNACAAAGTAGCAATTGCTTTTGTGTAAATANTCTTTTGTTAATATCATCATTAGAAGCNCGAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 323 fasta sequence
[CGCCCACGCGTCCGCGACTTCACTTTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTC-GGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAAGNGGGACGACA]
[+] EMBL C22698 [CGCCCACGCGTCCGCGACTTCACTTTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTC GGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCAC ]
[+] EMBL C22695 [ TTTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGGNATTCAAaaag ]
[+] EMBL AU033307 [ TTGCCCAGTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTNANAAAGTTGATGTNNTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGANCCAAAACTCTC GGAATTCAACAGCGAGGNGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGNTTCCCTCACAAAGNGGGACGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8394#0 GTTCACAAGGGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCA 60
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 TCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACAC 120
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 TGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTAT 180
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 GAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTG 240
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 GATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCAC 300
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 GAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGAT 360
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 GCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAA 420
consensus_8394#1 -----------------------------------------------------------C 1
consensus_8394#0 ACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATG 480
consensus_8394#1 GCCCACGCGTCCGCGACTTCACTTTGCCCAGT-GGCTACCTTGCACCTGAGTATGCCATG 60
* **** * * * * ** ** * ***************************
consensus_8394#0 AGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACT 540
consensus_8394#1 AGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACT 120
************************************************************
consensus_8394#0 GTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAA 600
consensus_8394#1 GTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAA 180
************************************************************
consensus_8394#0 AGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCG 660
consensus_8394#1 AGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCG 240
************************************************************
consensus_8394#0 GAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGC 720
consensus_8394#1 GAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGC 300
************************************************************
consensus_8394#0 TCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGAC 780
consensus_8394#1 TCCCCTCACAAA-GNGGGACGACA------------------------------------ 323
*********** * * * *
consensus_8394#0 ATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGC 840
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 TGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGAT 900
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 GGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCG 960
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 CCATTGTTCACCTCCATCATCGACGAGGGCAGGTGAAGATAACCGAGAAGCAGGGCAAGG 1020
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 AAGGCTTGGAGCTAAATTCCCGGCTCATACAAAGGCGGTCTCATCACTTGCTGACTTGGG 1080
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 TAGGAGGAAGAGGGAGTAGGTGATTGAACGATCTAAGGCATCTACTGCCTCCAATCCGTT 1140
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 CTAAAATACTGTAATTTAGAATGTGATTTAACTCATCCTAAGATAATGAATCGAAATAGA 1200
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 GATTGTCTAGATTCGTTATCTTTAGGATCGGTCAAATCACATTCTAGGTACAATATTTTG 1260
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 GAACGAAGTAGTAGCAGTCTGGTATGCCCGTGCATCACGCACGGGATCACATGGTGTTAC 1320
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 AGGTGTTTGGGCATCGCTTCCTCGCTGGAATTTGGTCGAGCCGTGTTGTTGGGTTGACCT 1380
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 AGGTGGTGTGAGTTCATGAGCGTGCCTCGTGCGCTTTGCTTGCTTAATTTCCTTCCCTTT 1440
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 GGCCTTGTTCTTTTGTTTCCCTTTTTCTCCTCCAATGCGCAAGAGGGTGTGCCCTTTTCA 1500
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 CAGTACACACCACGCAGATGAAGGGCTAACAAAGTAGCAATTGCTTTTGTGTAAATATTC 1560
consensus_8394#1 ------------------------------------------------------------
consensus_8394#0 TTTTGTTAATATCATCATTAGAAGCNCGAAAAAAAAAAAAAAAAAAA 1607
consensus_8394#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||