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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1697 fasta sequence
[GCGAGCCGGAGCGCGCAGGAGGCCTCCCATGGCCGTGCCTCCGCTTCTCCTCTTCCTCCTGCTGCTCTCCTCGTTCTCCTCCTGTGCCGCCGCCGCTTCCGGGGCTCCCGTGGGCGAGGACTACGTCCGGCCGCCCGCGGCGGCGCGGCGCTGCGGCCTCCACCACCGGAAGGCCCTCCTCAGCCTCTTCCCGTGGAGCAAGAAGAAGGACTCCTCTTCCGCCTCCGATCCGCAGCAGGTGCACATTTCACTAGCTGGAGAAAAGCACATGAGAGTTACATTTGTCACTGATGATAACTCCGTCCCTTCAGTTGTAGACTATGGAACTGAAGCAGGCACATACACATCAACGTCTCAAGGAGAAAGCACATCATACAGCTACTTAATGTATAGTTCAGGAAAGATCCATCATGTTGTTATTGGGCCCCTTAATGACAACACAGTTTACTACTACCGTTGTGGAGGACATGGTCCGGAATTCCAGTTTAAGACACCACCCTCCCAATTTCCCTTGTCATTGGCTGTTGTAGGTGATCTGGGGCAGACCAGTTGGACAACTTCGACACTTAATCACATTAAGCAGTGTGCACATGATATGCTTTTACTCCCTGGTGATCTCTCTTATGCGGATTATATGCAACATTTGTGGGATTCTTTTGGTACATTGGTGGAGCCACTTGCTAGCACCAGGCCCTGGATGGTGACAGAAGGAAATCATGAGAAGGAAAGGATACCGTTTTTTAAGTCTGGATTTCGATCATACAATGCACGATGGGAGGTGCCTTATGAAGAGAGCGAATCCACATCAAATCTCTACTACTCCTTCAAAGTTGCAGGGGTGCATGCTATAATGTTAGGTTCTTATACAGATTATGATGAAAGTTCAGATCAGTACGCTTGGCTTAAGGCTGATCTAGCTAAGGTTGACAGGAAAAGGACGCCATGGCTCATCGTATTGTTGCATGCACCATGGTATAATAGCAATTGGGCTCATCAAGGCGAAGGTGACAGTATGATGGCTGCAATGGAGCCTTTGCTCTATGCTGCTCATGTGGATATGGTAATCGCAGGTCATGTGCATGCTTATGAACGTGCGGAGCGAGTCTACAAGGGGGGACTTGATCCTTGTGGGGCTGTTCACATAACAATTGGGGATGGTGGAAACAGGGAAGGCTTGGCCCACAGGTACCGCAATCCGAAACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAATGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGATGATGTGTGGATAACGTC--GCTGGCTGGTTCCGGGTGCATCCAGGACGGTAGTCATGAGTACAGGAAAATTCTGATGTCCCCTTAAGAACATCTGAACAGACATACAGACTACAGTTAGTAGCATAGTCTAAGTGCCTGCCATGTATATTGTATATATGTTTACGACTTGCTAAAATACAATCTCAGAAGCTCTTTTTTTCTGTATTTTGAATCTTGGCTAATCTGGAGATACCACTGTAGCTTGTCGACATATCTCTTGATGTATGCAACAATGTTTGTAGCCAGCCAAGTGAATGGCATTCTGAGGAATGCTTACCTTGTGTAACTGGACGACAGTCATGATATGAAACATATGTTATGTTAAAAAAAAAAAAAAA]
[+] EMBL AK060200 [GCGAGCCGGAGCGCGCAGGAGGCCTCCCATGGCCGTGCCTCCGCTTCTCCTCTTCCTCCTGCTGCTCTCCTCGTTCTCCTCCTGTGCCGCCGCCGCTTCCGGGGCTCCCGTGGGCGAGGACTACGTCCGGCCGCCCGCGGCGGCGCGGCGCTGCGGCCTCCACCACCGGAAGGCCCTCCTCAGCCTCTTCCCGTGGAGCAAGAAGAAGGACTCCTCTTCCGCCTCCGATCCGCAGCAGGTGCACATTTCACTAGCTGGAGAAAAGCACATGAGAGTTACATTTGTCACTGATGATAACTCCGTCCCTTCAGTTGTAGACTATGGAACTGAAGCAGGCACATACACATCAACGTCTCAAGGAGAAAGCACATCATACAGCTACTTAATGTATAGTTCAGGAAAGATCCATCATGTTGTTATTGGGCCCCTTAATGACAACACAGTTTACTACTACCGTTGTGGAGGACATGGTCCGGAATTCCAGTTTAAGACACCACCCTCCCAATTTCCCTTGTCATTGGCTGTTGTAGGTGATCTGGGGCAGACCAGTTGGACAACTTCGACACTTAATCACATTAAGCAGTGTGCACATGATATGCTTTTACTCCCTGGTGATCTCTCTTATGCGGATTATATGCAACATTTGTGGGATTCTTTTGGTACATTGGTGGAGCCACTTGCTAGCACCAGGCCCTGGATGGTGACAGAAGGAAATCATGAGAAGGAAAGGATACCGTTTTTTAAGTCTGGATTTCGATCATACAATGCACGATGGGAGGTGCCTTATGAAGAGAGCGAATCCACATCAAATCTCTACTACTCCTTCAAAGTTGCAGGGGTGCATGCTATAATGTTAGGTTCTTATACAGATTATGATGAAAGTTCAGATCAGTACGCTTGGCTTAAGGCTGATCTAGCTAAGGTTGACAGGAAAAGGACGCCATGGCTCATCGTATTGTTGCATGCACCATGGTATAATAGCAATTGGGCTCATCAAGGCGAAGGTGACAGTATGATGGCTGCAATGGAGCCTTTGCTCTATGCTGCTCATGTGGATATGGTAATCGCAGGTCATGTGCATGCTTATGAACGTGCGGAGCGAGTCTACAAGGGGGGACTTGATCCTTGTGGGGCTGTTCACATAACAATTGGGGATGGTGGAAACAGGGAAGGCTTGGCCCACAGGTACCGCAATCCGAAACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAATGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGATGATGTGTGGATAACGTC GCTGGCTGGTTCCGGGTGCATCCAGGACGGTAGTCATGAGTACAGGAAAATTCTGATGTCCCCTTAAGAACATCTGAACAGACATACAGACTACAGTTAGTAGCATAGTCTAAGTGCCTGCCATGTATATTGTATATATGTTTACGACTTGCTAAAATACAATCTCAGAAGCTCTTTTTTTCTGTATTTTGAATCTTGGCTAATCTGGAGATACCACTGTAGCTTGTCGACATATCTCTTGATGTATGCAACAATGTTTGTAGCCAGCCAAGTGAATGGCATTCTGAGGAATGCTTACCTTGTGTAACTGGACGACAGTCATGATATGAAACATATGTTATGT ]
[+] EMBL CB640127 [ GCCGCTTCCGGGGCTCCCGTGGGCGAAGACTACGTCCAGCCGCCCGCGGCGGCGCGGCGCTGCGGCCTCCACCACCGGAAGGCCCTCCTCAACCTCTTCCCGTGGAGCAAGAAGAAGGACTCCTCTTCCGCCTCCGATCCGCAACAGGTGCACATTTCACTAGCTGGAGAAAAGCACATGAGAGTTACATTTGTCACTGATGATAACTCCGTCCCTTCAGTTGTAGACTATGGAACTGAAGCAGGCACATACACATCAACGTCTCAAGGAGAAAGCACATCATACAGCTACTTAATGTATAGTTCAAGAAAGATCCATCATGTTGTTATTGGGCCCCTTAATGACAACACAGTTTACTACTACCGTTGTGGAGGACATGGTCCGGAATTCCAGATTAAGAC ]
[+] EMBL BE229559 [ GTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAATGCCACGSATGCTCACTGGACTTGGCACAGAAATGATGACGGAGAACCAGTGAGAACGGATGATGTGTGGATAACGTC GCTGGCTGGTTCCGGGTGCATCCAGGRCGGTAGTCATGAGTACAGGAAAATTCTGATGTCCCCTTAAGAACATCTGAACAGACATACAGACTACAGTTAGTAGCATAGTCTAAGTGCCTSCCATGTATATTGTATATATGTTTACGACTTGCTAAAATACAATCTCAGAAGCTCTTTTTTTCTGTATTTTGAATCTTGGCTAATCTGGAGATACCACTGTAGCTTGTCGACATATCTCTTGATGTATGC ACAATGTTTGTAGCCAGCCAAGTGAATGGCATTCTGRGGAATGCTYACCTTGTGT ACTGGGCGMCAGTCATGATATGAAACATATGTTATGTTAAAAAAAAAAAAAAA]
[-] EMBL OSA309288 [ GACTTGGCACAGAAATGATGACGAAGAACCAGTGTGAACGGATGATGTGTGGATAACCTCCTGCTGGCTGGTTCCGGGTGCATCCAGGACGGTAGTCATGAGTACAGGAAAATTCTGATGTCCCCTTAAGAACATCTGAACAGACATACAGACTACAGTTAGTAGCATAGTCTAAGTGCCTGCCATGTATATTGTATATATGTTTACGACTTGCTAAAATACAATCTCAGAAGCTCTTTTTTACTGTATTTTGAATCTTGGCTAATCTGGAGATACTACTGTAGCTTGTCGACATATCTCTTGATGTATGCAACAATGTTTGTAGCCAGCCAAGTGAATCGGATTCTGAGGAATGCTTACCTTGTGTAACTGGACGACAGTCATGGTATGAAACATATGT ]
consensusID : consensus_8397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[AAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACCGCAATCCGAAACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAATGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGATGATGTGTGGATAACGTCGCTGGCTGGTTCCGGGTGCATCCAGGACGGTA]
[-] EMBL CA748458 [AAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACCGCAATCCGAAACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAATGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGATGATGTGTGGATAACGTCGCTGGCTGGTTCCGGGTGCATCCAGGACGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8397#0 GCGAGCCGGAGCGCGCAGGAGGCCTCCCATGGCCGTGCCTCCGCTTCTCCTCTTCCTCCT 60
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 GCTGCTCTCCTCGTTCTCCTCCTGTGCCGCCGCCGCTTCCGGGGCTCCCGTGGGCGAGGA 120
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 CTACGTCCGGCCGCCCGCGGCGGCGCGGCGCTGCGGCCTCCACCACCGGAAGGCCCTCCT 180
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 CAGCCTCTTCCCGTGGAGCAAGAAGAAGGACTCCTCTTCCGCCTCCGATCCGCAGCAGGT 240
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 GCACATTTCACTAGCTGGAGAAAAGCACATGAGAGTTACATTTGTCACTGATGATAACTC 300
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 CGTCCCTTCAGTTGTAGACTATGGAACTGAAGCAGGCACATACACATCAACGTCTCAAGG 360
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 AGAAAGCACATCATACAGCTACTTAATGTATAGTTCAGGAAAGATCCATCATGTTGTTAT 420
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 TGGGCCCCTTAATGACAACACAGTTTACTACTACCGTTGTGGAGGACATGGTCCGGAATT 480
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 CCAGTTTAAGACACCACCCTCCCAATTTCCCTTGTCATTGGCTGTTGTAGGTGATCTGGG 540
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 GCAGACCAGTTGGACAACTTCGACACTTAATCACATTAAGCAGTGTGCACATGATATGCT 600
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 TTTACTCCCTGGTGATCTCTCTTATGCGGATTATATGCAACATTTGTGGGATTCTTTTGG 660
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 TACATTGGTGGAGCCACTTGCTAGCACCAGGCCCTGGATGGTGACAGAAGGAAATCATGA 720
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 GAAGGAAAGGATACCGTTTTTTAAGTCTGGATTTCGATCATACAATGCACGATGGGAGGT 780
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 GCCTTATGAAGAGAGCGAATCCACATCAAATCTCTACTACTCCTTCAAAGTTGCAGGGGT 840
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 GCATGCTATAATGTTAGGTTCTTATACAGATTATGATGAAAGTTCAGATCAGTACGCTTG 900
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 GCTTAAGGCTGATCTAGCTAAGGTTGACAGGAAAAGGACGCCATGGCTCATCGTATTGTT 960
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 GCATGCACCATGGTATAATAGCAATTGGGCTCATCAAGGCGAAGGTGACAGTATGATGGC 1020
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 TGCAATGGAGCCTTTGCTCTATGCTGCTCATGTGGATATGGTAATCGCAGGTCATGTGCA 1080
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 TGCTTATGAACGTGCGGAGCGAGTCTACAAGGGGGGACTTGATCCTTGTGGGGCTGTTCA 1140
consensus_8397#1 -------------------------------------------------AAGGAAATTAA 11
** ** *
consensus_8397#0 CATAACAATTGGGGATGGTGGAAACAGGGAAGGCTTGGCCCACAGGTACCGCAATCCGAA 1200
consensus_8397#1 ACTGATTTAT-----TACTTGTTCCATTAAAACCATCACACTCGGGTACCGCAATCCGAA 66
* * * * * * ** ** * * * * * ****************
consensus_8397#0 ACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAA 1260
consensus_8397#1 ACCAGCTTGGTCAGTCTTCCGGGAAGCAAGCTTTGGGCATGGTGAACTAAAAATAGTAAA 126
************************************************************
consensus_8397#0 TGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGA 1320
consensus_8397#1 TGCCACGCATGCTCACTGGACTTGGCACAGAAATGATGACGAAGAACCAGTGAGAACGGA 186
************************************************************
consensus_8397#0 TGATGTGTGGATAACGTCGCTGGCTGGTTCCGGGTGCATCCAGGACGGTAGTCATGAGTA 1380
consensus_8397#1 TGATGTGTGGATAACGTCGCTGGCTGGTTCCGGGTGCATCCAGGACGGTA---------- 236
**************************************************
consensus_8397#0 CAGGAAAATTCTGATGTCCCCTTAAGAACATCTGAACAGACATACAGACTACAGTTAGTA 1440
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 GCATAGTCTAAGTGCCTGCCATGTATATTGTATATATGTTTACGACTTGCTAAAATACAA 1500
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 TCTCAGAAGCTCTTTTTTTCTGTATTTTGAATCTTGGCTAATCTGGAGATACCACTGTAG 1560
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 CTTGTCGACATATCTCTTGATGTATGCAACAATGTTTGTAGCCAGCCAAGTGAATGGCAT 1620
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 TCTGAGGAATGCTTACCTTGTGTAACTGGACGACAGTCATGATATGAAACATATGTTATG 1680
consensus_8397#1 ------------------------------------------------------------
consensus_8397#0 TTAAAAAAAAAAAAAAA 1697
consensus_8397#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||