cluster # 8497

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8497 cluster # 8497 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8497#0 length = 500 sequences # 2

consensus_8497#1 length = 370 sequences # 3

consensusID : consensus_8497#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 500
fasta sequence

                              [GGAAGCTCTAAGCCACCCGTGGCTCCCGTTGAAGGATTTCCGTTAAACAAAGCAAGGAATGGAANCTTTAAAGGCTTAACCTTGGAAAAAGCCTGAAACTACGCTGNTTNGGTGGCCCAGCAGACAAAGTTGCTTCCCTTGGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCAT-GCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGCAATTGTAATAAAAAATCAATAACTCATTTTGATTTAACACCTGTGTCTTCTCTGAGTGTGATTAAAAAAAAAA]

[+] EMBL AU086029             [GGAAGCTCTAAGCCACCCGTGGCTCCCGTTGAAGGATTTCCGTTAAACAAAGCAAGGAATGGAANCTTTAAAGGCTTAACCTTGGAAAAAGCCTGAAACTACGCTGNTTNGGTGGCCCAGCAGACAAAGTTGCTTCCCTTGGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCAT GCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGCAATTGTAATAAAAAA                                                          ]
[+] EMBL C96758               [                                                                                                           TTTGGTGG CCAGCAGAC AAGTTGCTTCCCTT GGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGCAATTGTAATACTTATTCAATAACTCATTTTGATTTAACACCTGTGTCTTCTCTGAGTGTGATTAAAAAAAAAA]




>consensus_8497#0
GGAAGCTCTAAGCCACCCGTGGCTCCCGTTGAAGGATTTCCGTTAAACAAAGCAAGGAAT
GGAANCTTTAAAGGCTTAACCTTGGAAAAAGCCTGAAACTACGCTGNTTNGGTGGCCCAG
CAGACAAAGTTGCTTCCCTTGGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAAC
TTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTT
CACATTTGAAGAAATCATGCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGT
ATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAA
ATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGT
ATTTTGCAATTGTAATAAAAAATCAATAACTCATTTTGATTTAACACCTGTGTCTTCTCT
GAGTGTGATTAAAAAAAAAA

consensusID : consensus_8497#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 370
fasta sequence

                              [TTTGGTGGCCAGCAGACAAG-TTGCTTCCCTTGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGCAATTGTAATACTTATTCAATAACTCATTTTGATTTAAAAAAAAAAAAAAAAA]

[-] EMBL CA762535             [TTTGGTGGCCAGCAGACAAG TTGCTTCCCATGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCTCAAAAACAGTGTTTAAATAGGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTAGCCTGTAGCTTGTGTATTCCCACGCATTCTCGTTTTTCATGCGAAGGCTGGAGTCGAGTTACAGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCCTGAATGACAGGGTATTTTGCAATTGTAATACTTATTCAATAGCTCTTTTTGATTTAAAAAAAAAAAAA    ]
[+] EMBL BI809719             [TTTGGTGGCCA CAGACAAGTTTGCTTCCCTTGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCAC AAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGC ATTGTAATACTTATTCAATAACTCATTTTGATTTAAAAAAA          ]
[-] EMBL CA762534             [ TTGGTGGCCAGCAGACAAG TTGCTTCCCTTGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTTTTTTGCCTGTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGGTATTTTGCAATTGTAATACTTATTCAATAACTCATTTTGATTTAAAAAAAAAAAAAAAAA]




>consensus_8497#1
TTTGGTGGCCAGCAGACAAGTTGCTTCCCTTGGACTGTTGATCTAACCGAAGGAATTTTT
TTGTGTGAACTTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTA
GGGATCATTTCACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTTGCCT
GTAGCTTGTGTATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTG
TATTTGCTGAAATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATG
AATGACAGGGTATTTTGCAATTGTAATACTTATTCAATAACTCATTTTGATTTAAAAAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8497#0      GGAAGCTCTAAGCCACCCGTGGCTCCCGTTGAAGGATTTCCGTTAAACAAAGCAAGGAAT 60
consensus_8497#1      ------------------------------------------------------------
                                                                                  

consensus_8497#0      GGAANCTTTAAAGGCTTAACCTTGGAAAAAGCCTGAAACTACGCTGNTTNGGTGGCCCAG 120
consensus_8497#1      -----------------------------------------------TTTGGTGGCC-AG 12
                                                                     ** ******* **

consensus_8497#0      CAGACAAAGTTGCTTCCCTTGGGACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAAC 180
consensus_8497#1      CAGACAA-GTTGCTTCCCTTGG-ACTGTTGATCTAACCGAAGGAATTTTTTTGTGTGAAC 70
                      ******* ************** *************************************

consensus_8497#0      TTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTT 240
consensus_8497#1      TTACCATGTGTAGACATGTAGCAGTCGTTCACAAAAACAGTGTTTATTTAGGGATCATTT 130
                      ************************************************************

consensus_8497#0      CACATTTGAAGAAATCATG-CCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTG 299
consensus_8497#1      CACATTTGAAGAAATCATGGCCAGAGGCCCAGAGCTTGACTCTTTTGCCTGTAGCTTGTG 190
                      ******************* ****************************************

consensus_8497#0      TATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGA 359
consensus_8497#1      TATTCCCACGCATTCTTGTTTTTCATGCGAAGGCAGGAGTCGAGTTACTGTATTTGCTGA 250
                      ************************************************************

consensus_8497#0      AATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGG 419
consensus_8497#1      AATATGTGTAATAGGGCAAATCCTTTTTCCATTGAGAATCTGGCTCCATGAATGACAGGG 310
                      ************************************************************

consensus_8497#0      TATTTTGCAATTGTAATAAAAAATCAATAACTCATTTTGATTTAACACCTGTGTCTTCTC 479
consensus_8497#1      TATTTTGCAATTGTAATACTTATTCAATAACTCATTTTGATTTAAAA------------- 357
                      ******************   * ********************** *             

consensus_8497#0      TGAGTGTGATTAAAAAAAAAA 500
consensus_8497#1      --------AAAAAAAAAAAAA 370
                              *  **********