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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2388 fasta sequence
[CGCTGACTGACGCTGCCCGCCGTGTGGCCGTGCATTGCTGTCCCTGAGCTTGCTGCTGCTGGTGGTGGTGACGATTCTGCTCGGTAGAGGAGATGCGAGTTGGGGGTGAGCTCCACAGCGGCGGCGGAGGAGGAGAGGGGGTGTTGGTGGGGAGGGGATGGAGGAAGGAGGAGGCGGAGGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGCTCGGCGAGCTCGACGAGCCGGGGATCGTCTCTCTGCGACTCGCCTTTGCCCAGCTTTGTGCGCCATCGTGGTGGACCGGGGTCAGATCTAGAGCTCGATGGGTTGCCCACTTCCTCCTCCAATGCTTCCTCAGGGTCACACGAGGAGGATCACGGGCCATTGCAAGGGGTGAAGGGAGAGGGGTGGATGCAAGTGCAGGGACCGATCAAGAACTCAGCTGCCCGTTCTACCGGAGAATGCCAAGACCAGCGGTACCGGTTGGGGTCTGTTCTTTTCCATGGTAAGAATGAACGGAAGCAGCGCCCGGCTTCAGTTGATTTTGGCTGCCCCAGTGTTGACAGATCCTCCACGCATTCTCCGGGTTTCTTGGTCAATGGTACCGGGGCGATGAACAAGGGATTGAGTGTATCATCGCAAAATAAACCAGGTGCGCCGACTAGCCCAGGAACACCAAGCTACAATCGTCAGGGTGCAACAGTTGTTGGGTATCAGCAGGGTTGGAGCTCTGAAAGAGTTGCCCTGTCTTCAAACGGCCAGAGAAGGCATTCAGGCAACAGCATGGTGTTACCACATAATACTGGGAGAACATTGCCCTCAAAATGGGAGGACGCAGAGAGGTGGATCTTCAGTCCGAATCCCAGCAATGCACTTGGAAGGACCTCAATCCCGCAGTCGCGGCGACCTAAGGCCAAAAGTGGACCTCTTGGACCTCCTGGCAGATTTAGTGAACCATACTCATCAGTTTCGTCATCGTCATATTTGCTTGACACCGGGAGAGTAGGAAACCTCACGGCAAACTCACCTTTCCTGGCTGGGGTCTTGCTGCCTGAGCATGTTTGTGTGTCCAGTAGCCATGCTGGAAGGGATCTAAGTGGTGCATCTGGTGAGGATAAAAGCAATGGCATGGGAGGCAGGTCTGGTGAAGCAAATGGTGCACATCCTGCCGTGTGGTCTACCAGAGTTTGCCAACGAATGGATAGCGCAGTTCAGTCGTCTCCGTCATTGCCTACTTCCCAAGAATCAGTTCAAGCTTGCACAGATGAACAGATCGAAATCACAACAGACTTGACCACCAGCAGTAAACCTGAAATTTCGAGAAAAGATGTGGCAACACAGACTAGCCCTGAGCTTAGCAGGTCATCTTCTCCTAGCGGGAGGCCTTCATTTTCCCGCTCACTATCAGTACAGCAAGTCAAAGAGTTGGAGAGCTGTTTCTCTAAGCTTGAGATAAGGGATGTGCAGATGGATGATCGGGTTACTCTGACCAGGTGGTCCAAGAAACATGTCACACGAGGCTCTGAGAAGAACTCGACAAACATTATAGAGTGGAAGAAAAAGACAGTGGAATCTAAATCTTCTGCCTGGGAAGTAACAGAAACTGCAAAGTGTATATCAAAGATTGAGGGAGAGGAAGCAAAGATGACTGCATGGGAGAATCTGCAAAAGGCAAAAGCAGAGGCAGCAATACAAAAGCTTGTGATGAAACTTGAAAAGAAAAGATCATACTCGCTGGAGAGGATTTTCAATACCCTCAGGTCAGGTCATAGGAAAACACATGTGATACGCAGCACAACTACCACAAATCTTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAATGAGTTCGCTGAGTGGGTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAAGCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGGGAACCAAAAGGCTTGCTAGTATAGAATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATCATATCCAATGGTCTGTCATTACAAGATTTATTCTAGAATTTCCCTTTTTATTCTGCTCAGGAACAAAAGGAAGTTGACGCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCATTCCTCTTTTATACAGCAAAATTTCATCCACTATTAGACTCTAGAGAGCAAAGATTCTTCTTGTAACTATGAGAACACGCTGTCTATTGTGCTTCAAGCCTTGTACCATGACTTTTTTTTTAATTAGCTCTGTACATGACGTATAATCACCCCACCCGGGATACTGGCA]
[+] EMBL AK105281 [CGCTGACTGACGCTGCCCGCCGTGTGGCCGTGCATTGCTGTCCCTGAGCTTGCTGCTGCTGGTGGTGGTGACGATTCTGCTCGGTAGAGGAGATGCGAGTTGGGGGTGAGCTCCACAGCGGCGGCGGAGGAGGAGAGGGGGTGTTGGTGGGGAGGGGATGGAGGAAGGAGGAGGCGGAGGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGCTCGGCGAGCTCGACGAGCCGGGGATCGTCTCTCTGCGACTCGCCTTTGCCCAGCTTTGTGCGCCATCGTGGTGGACCGGGGTCAGATCTAGAGCTCGATGGGTTGCCCACTTCCTCCTCCAATGCTTCCTCAGGGTCACACGAGGAGGATCACGGGCCATTGCAAGGGGTGAAGGGAGAGGGGTGGATGCAAGTGCAGGGACCGATCAAGAACTCAGCTGCCCGTTCTACCGGAGAATGCCAAGACCAGCGGTACCGGTTGGGGTCTGTTCTTTTCCATGGTAAGAATGAACGGAAGCAGCGCCCGGCTTCAGTTGATTTTGGCTGCCCCAGTGTTGACAGATCCTCCACGCATTCTCCGGGTTTCTTGGTCAATGGTACCGGGGCGATGAACAAGGGATTGAGTGTATCATCGCAAAATAAACCAGGTGCGCCGACTAGCCCAGGAACACCAAGCTACAATCGTCAGGGTGCAACAGTTGTTGGGTATCAGCAGGGTTGGAGCTCTGAAAGAGTTGCCCTGTCTTCAAACGGCCAGAGAAGGCATTCAGGCAACAGCATGGTGTTACCACATAATACTGGGAGAACATTGCCCTCAAAATGGGAGGACGCAGAGAGGTGGATCTTCAGTCCGAATCCCAGCAATGCACTTGGAAGGACCTCAATCCCGCAGTCGCGGCGACCTAAGGCCAAAAGTGGACCTCTTGGACCTCCTGGCAGATTTAGTGAACCATACTCATCAGTTTCGTCATCGTCATATTTGCTTGACACCGGGAGAGTAGGAAACCTCACGGCAAACTCACCTTTCCTGGCTGGGGTCTTGCTGCCTGAGCATGTTTGTGTGTCCAGTAGCCATGCTGGAAGGGATCTAAGTGGTGCATCTGGTGAGGATAAAAGCAATGGCATGGGAGGCAGGTCTGGTGAAGCAAATGGTGCACATCCTGCCGTGTGGTCTACCAGAGTTTGCCAACGAATGGATAGCGCAGTTCAGTCGTCTCCGTCATTGCCTACTTCCCAAGAATCAGTTCAAGCTTGCACAGATGAACAGATCGAAATCACAACAGACTTGACCACCAGCAGTAAACCTGAAATTTCGAGAAAAGATGTGGCAACACAGACTAGCCCTGAGCTTAGCAGGTCATCTTCTCCTAGCGGGAGGCCTTCATTTTCCCGCTCACTATCAGTACAGCAAGTCAAAGAGTTGGAGAGCTGTTTCTCTAAGCTTGAGATAAGGGATGTGCAGATGGATGATCGGGTTACTCTGACCAGGTGGTCCAAGAAACATGTCACACGAGGCTCTGAGAAGAACTCGACAAACATTATAGAGTGGAAGAAAAAGACAGTGGAATCTAAATCTTCTGCCTGGGAAGTAACAGAAACTGCAAAGTGTATATCAAAGATTGAGGGAGAGGAAGCAAAGATGACTGCATGGGAGAATCTGCAAAAGGCAAAAGCAGAGGCAGCAATACAAAAGCTTGTGATGAAACTTGAAAAGAAAAGATCATACTCACTGGAGAGGATTTTCAATACCCTCAGGTCAGCTCATAGGAAAACACATGTGATACGCAGCACAACTACCACAAATCTTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAATGAGTTCGCTGAGTGGGTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAAGCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGGGAACCAAAAGGCTTGCTAGTATAGAATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATGATATCCAATGGTCTGTCATTACAAGATTTATTCTAGAATTTCCCTTTTTATTCTGCTCAGGAACAAAAGGAAGTTGACGCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGA ]
[+] EMBL OSS12039A [ GTCATCGTCATATTTGCTTGACACCGGGAGAGTAGGAAACCTCACGGCAAACTCACCTTTCCTGGCTGGGGTCTTGCTGCCTGAGCATGTTTGTGTGTCCAGTAGCCATGCTGGAAGGGATCTAAGTGGTGCATCTGGTGAGGATAAAAGCAATGGCATGGGAGGCAGGTCTGGTGAAGCAAATGGTGCACATCCTGCCGTGTGGTCTACCAGAGTTTGCCAACGAATGGATAGCGCAGTTCAGTCGTCTCCGTCATTGCCTACTTCCCAAGAATCAGTTCAAGCTTGCACAGATGAACAGATCGAAATCACAACAGACTTGACCACCAGCAGTAAACCTGAAATTTCGAGAAAAGATGTGGCAACACAGACTAGCCCTGAGCTTAGCAGGTCATCTTCTCCTAGCGGGAGGCCTTCATTTTCCCG TCACTATCAGTACAGCAAGTCAAA ]
[-] EMBL CB635696 [ AAACTGCAAAGTGTATATCAAAGATTGAGGGAGAGGAAGCAAAGATGACTGCATGGGAGAATCTGCAAAAGGCAAAAGCAGAGGCAGCAATACAAAAGCTTGTGATGAAACTTGAAAAGAAAAGATCATACTCGCTGGAGAGGATTTTCAATACCCTCAGGTCAGGTCATAGGAAAACACATGTGATACGCAGCACAACTACCACAAATCTTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAATGAGTTCGCTGAGTGGGTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAAGCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGGGAACCAAAAGGCTTGCTAGTATAGAATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATCATATCCAATGGTCTGTCATTACAAGATTTATTCTAGAATTTCCCTTTTTATTCTGCTCAGGAACAAAAGGAAGTTGACGCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCATTCCTCTTTTATACAGCAAAATTTCATCCACTATTAGACTCTAGAGAGCAAAGATTCTTCTTGTAACTATGAGAACACGCTGTCTATTGTGCTTCAAGCCTTGTACCATGACTTTTTTTTTAATTAGCTCTGTACATGACGTATAATCACCCCACCCGGGATACTGGCA]
[-] EMBL CB635695 [ AGATGACTGCATGGGAGAATCTGCAAAAGGCAAAGGCAGAGGCAGCAATACAAAAGCTTGTGATGAAACTTGAAAAGAAAAGATCATACTCGCTGGAGAGGATTTTCAATACCCTCAGGTCAGGTCATAGGAAAACACATGTGATACGCAGCACAACTACCACAAATCTTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAATGAGTTCGCTGAGTGGGTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAAGCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGGGAACCAAAAGGCTTGCTAGTATAGAATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATCATATCCAAGGGTCGGT ]
consensusID : consensus_8588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[AGACCTAGCAGGGGAAGCCGAGGCTNTCAATGNTATCCAATGGTCTGTNATTACAAGATTTATTCTAGAATTTCCCTTNNAAAAANGNTCAGGCNCCCCNGGNAGTTGACGCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCATTCCTCTTTTATACAGCAAAAAAAAANAAAAAANA]
[+] EMBL AU088676 [AGACCTAGCAGGGGAAGCCGAGGCTNTCAATGNTATCCAATGGTCTGTNATTACAAGATTTATTCTAGAATTTCCCTTNNAAAAANGNTCAGGCNCCCCNGGNAGTTGACGCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCTGCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCATTCCTCTTTTATACAGCAAAAAAAAANAAAAAANA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8588#0 CGCTGACTGACGCTGCCCGCCGTGTGGCCGTGCATTGCTGTCCCTGAGCTTGCTGCTGCT 60
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 GGTGGTGGTGACGATTCTGCTCGGTAGAGGAGATGCGAGTTGGGGGTGAGCTCCACAGCG 120
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 GCGGCGGAGGAGGAGAGGGGGTGTTGGTGGGGAGGGGATGGAGGAAGGAGGAGGCGGAGG 180
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 GAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGCTCGGCGAGCTCGACGAGCCGGGGAT 240
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 CGTCTCTCTGCGACTCGCCTTTGCCCAGCTTTGTGCGCCATCGTGGTGGACCGGGGTCAG 300
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 ATCTAGAGCTCGATGGGTTGCCCACTTCCTCCTCCAATGCTTCCTCAGGGTCACACGAGG 360
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 AGGATCACGGGCCATTGCAAGGGGTGAAGGGAGAGGGGTGGATGCAAGTGCAGGGACCGA 420
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TCAAGAACTCAGCTGCCCGTTCTACCGGAGAATGCCAAGACCAGCGGTACCGGTTGGGGT 480
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 CTGTTCTTTTCCATGGTAAGAATGAACGGAAGCAGCGCCCGGCTTCAGTTGATTTTGGCT 540
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 GCCCCAGTGTTGACAGATCCTCCACGCATTCTCCGGGTTTCTTGGTCAATGGTACCGGGG 600
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 CGATGAACAAGGGATTGAGTGTATCATCGCAAAATAAACCAGGTGCGCCGACTAGCCCAG 660
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 GAACACCAAGCTACAATCGTCAGGGTGCAACAGTTGTTGGGTATCAGCAGGGTTGGAGCT 720
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 CTGAAAGAGTTGCCCTGTCTTCAAACGGCCAGAGAAGGCATTCAGGCAACAGCATGGTGT 780
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TACCACATAATACTGGGAGAACATTGCCCTCAAAATGGGAGGACGCAGAGAGGTGGATCT 840
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TCAGTCCGAATCCCAGCAATGCACTTGGAAGGACCTCAATCCCGCAGTCGCGGCGACCTA 900
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 AGGCCAAAAGTGGACCTCTTGGACCTCCTGGCAGATTTAGTGAACCATACTCATCAGTTT 960
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 CGTCATCGTCATATTTGCTTGACACCGGGAGAGTAGGAAACCTCACGGCAAACTCACCTT 1020
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TCCTGGCTGGGGTCTTGCTGCCTGAGCATGTTTGTGTGTCCAGTAGCCATGCTGGAAGGG 1080
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 ATCTAAGTGGTGCATCTGGTGAGGATAAAAGCAATGGCATGGGAGGCAGGTCTGGTGAAG 1140
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 CAAATGGTGCACATCCTGCCGTGTGGTCTACCAGAGTTTGCCAACGAATGGATAGCGCAG 1200
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TTCAGTCGTCTCCGTCATTGCCTACTTCCCAAGAATCAGTTCAAGCTTGCACAGATGAAC 1260
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 AGATCGAAATCACAACAGACTTGACCACCAGCAGTAAACCTGAAATTTCGAGAAAAGATG 1320
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TGGCAACACAGACTAGCCCTGAGCTTAGCAGGTCATCTTCTCCTAGCGGGAGGCCTTCAT 1380
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TTTCCCGCTCACTATCAGTACAGCAAGTCAAAGAGTTGGAGAGCTGTTTCTCTAAGCTTG 1440
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 AGATAAGGGATGTGCAGATGGATGATCGGGTTACTCTGACCAGGTGGTCCAAGAAACATG 1500
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TCACACGAGGCTCTGAGAAGAACTCGACAAACATTATAGAGTGGAAGAAAAAGACAGTGG 1560
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 AATCTAAATCTTCTGCCTGGGAAGTAACAGAAACTGCAAAGTGTATATCAAAGATTGAGG 1620
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 GAGAGGAAGCAAAGATGACTGCATGGGAGAATCTGCAAAAGGCAAAAGCAGAGGCAGCAA 1680
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TACAAAAGCTTGTGATGAAACTTGAAAAGAAAAGATCATACTCGCTGGAGAGGATTTTCA 1740
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 ATACCCTCAGGTCAGGTCATAGGAAAACACATGTGATACGCAGCACAACTACCACAAATC 1800
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TTGATCAGCACATCTCCAGGACTGTGAAAAGGCCATCACACCTTAGCAAGAATGGCCAAA 1860
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 TGAGTTCGCTGAGTGGGTGCTTCACTTGCCATGCCTTCTAGTATGGTATTATACAGTCAA 1920
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 GCGGCACTGTCACTTTCAAGATGGAATTGGAGGGGGGAACCAAAAGGCTTGCTAGTATAG 1980
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 AATACAGATAAGACCTAGCAGGGGAAGCCGAGGCTCTCAATCATATCCAATGGTCTGTCA 2040
consensus_8588#1 ----------AGACCTAGCAGGGGAAGCCGAGGCTNTCAATGNTATCCAATGGTCTGTNA 50
************************* ***** *************** *
consensus_8588#0 TTACAAGATTTATTCTAGAATTTCCCTTTTTATTCTGCTCAGGAACAAAAGGAAGTTGAC 2100
consensus_8588#1 TTACAAGATTTATTCTAGAATTTCCCTTNNAAAAANGNTCAGGCNCCCCNGGNAGTTGAC 110
**************************** * * ***** * ** *******
consensus_8588#0 GCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCT 2160
consensus_8588#1 GCAGAGGGAAGGAGTTGTTACTACACACCTTGTGAAGTATTTGTAATAATAAAAATCTCT 170
************************************************************
consensus_8588#0 GCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCAT 2220
consensus_8588#1 GCCTATACTCTTCAGGGCGGAGTGGTATCATAAAAACTACAATATGTCAATTCCAACCAT 230
************************************************************
consensus_8588#0 TCCTCTTTTATACAGCAAAATTTCATCCACTATTAGACTCTAGAGAGCAAAGATTCTTCT 2280
consensus_8588#1 TCCTCTTTTATACAGCAAAAAAAAANAAAAAANA-------------------------- 264
******************** * * *
consensus_8588#0 TGTAACTATGAGAACACGCTGTCTATTGTGCTTCAAGCCTTGTACCATGACTTTTTTTTT 2340
consensus_8588#1 ------------------------------------------------------------
consensus_8588#0 AATTAGCTCTGTACATGACGTATAATCACCCCACCCGGGATACTGGCA 2388
consensus_8588#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||