cluster # 8648

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Oryza sativa
cluster # 8648 cluster # 8648 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8648#0 length = 760 sequences # 2

consensus_8648#1 length = 676 sequences # 3

consensusID : consensus_8648#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 760
fasta sequence

                              [GACAGCCCTCCGGAAAAGAGCCAAGACAACCAAAACTAGTGTTCCGACCCCCTTTGAAATCATAATGAAAGGGTTGGAAGGAACCTCTGGCAAGCAGCTGGTAAAGGAGATATGCCCAACATGTGGAGATCATGACCCCAAGGAAGATACATGGTTAATGTTTCCAGGATCAGATATCTTTGCTCGTGTTCCATTTCATGTGGCCCACACTGTTCTAGACAAAGATCAAGAACGACTAGACTATGACACCAAGAAGCTACAGAGCTTTGTGAAGGAGAAATCGTTTGTGATATCAGAGAAAGGTGCCCTTGCAGACAGAATCAGCCCCGGCATCGTGAAATCCCTCGTCAGCCTTACAGATAAACCCAAGTAGGCACAAGAGAGAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGGCAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGTTATGAATTGTATGACTAGGTTAGGCTATATGAC-AG-TACTTCATTTCAGGC-GC-A-GTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCTTACAAAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTTAAACCT]

[+] EMBL AK059106             [GACAGCCCTCCGGAAAAGAGCCAAGACAACCAAAACTAGTGTTCCGACCCCCTTTGAAATCATAATGAAAGGGTTGGAAGGAACCTCTGGCAAGCAGCTGGTAAAGGAGATATGCCCAACATGTGGAGATCATGACCCCAAGGAAGATACATGGTTAATGTTTCCAGGATCAGATATCTTTGCTCGTGTTCCATTTCATGTGGCCCACACTGTTCTAGACAAAGATCAAGAACGACTAGACTATGACACCAAGAAGCTACAGAGCTTTGTGAAGGAGAAATCGTTTGTGATATCAGAGAAAGGTGCCCTTGCAGACAGAATCAGCCCCGGCATCGTGAAATCCCTCGTCAGCCTTACAGATAAACCCAAGTAGGCACAAGAGAGAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGGCAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGTTATGAATTGTATGACTAGGTTAGGCTATATGAC AG TACTTCATTTCAGGC GC A GTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCTTACAAAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTTAAACCT]
[-] EMBL AA750386             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CATTCTGTGACATTAGCTAGGCNGCTGTTGATTAGTTTTTAGGCGNCCTCTAATCCTATATTGTTATGAATTGTATGACTAGGCCAGGCTATATGACTAGATACTTCATTTCAGGCTGCTATGTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTCAAAATTCAGGTCTTACAAAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTTAA    ]




>consensus_8648#0
GACAGCCCTCCGGAAAAGAGCCAAGACAACCAAAACTAGTGTTCCGACCCCCTTTGAAAT
CATAATGAAAGGGTTGGAAGGAACCTCTGGCAAGCAGCTGGTAAAGGAGATATGCCCAAC
ATGTGGAGATCATGACCCCAAGGAAGATACATGGTTAATGTTTCCAGGATCAGATATCTT
TGCTCGTGTTCCATTTCATGTGGCCCACACTGTTCTAGACAAAGATCAAGAACGACTAGA
CTATGACACCAAGAAGCTACAGAGCTTTGTGAAGGAGAAATCGTTTGTGATATCAGAGAA
AGGTGCCCTTGCAGACAGAATCAGCCCCGGCATCGTGAAATCCCTCGTCAGCCTTACAGA
TAAACCCAAGTAGGCACAAGAGAGAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGGCA
AGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGC
TATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCAT
TCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTG
TTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACTTCATTTCAGGCGCAGTTTTC
ATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCTTACAAAA
GTTTGACCAGATGATAATACCCGGGGTTTTTTTTAAACCT

consensusID : consensus_8648#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 676
fasta sequence

                              [GGCGGAGTCATGCGCCCAAGGAAGACGCATGGGTCAAGGGTCGCAGGGTACGGGGGTGTGGGGTAGGGTTCGTGGAGATGGATACCAGCCTGTTTTAGACAAAAGCGAAGGGCCACGGGCTGGGACGGCAGGAACGCACAAAACTTCGTGAAGGACAGATCGTTTGTGATATCAGAGAAAGGTGGCCTTGCAGACAGAATCAGCCCTGGCATCGTGAAATCCCTCGTCAGCGTTACAGATAAGCACAAGTAGGCGCCAGAGATAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGACAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGTTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACT-TCATTTCAGGCGCAGTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCATACAAAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTAAACCTTTGACACCGCAATATTTGATGTTGCCCCAAAAAAAAAA]

[-] EMBL CA762612             [GGCGGAGTCATGCGCCCAAGGAAGACGCATGGGTCAAGGGTCGCAGGGTACGGGGGTGTGGGGTAGGGTTCGTGGAGATGGATACCAGCCTGTTTTAGACAAAAGCGAAGGGCCACGGGCTGGGACGGCAGGAACGCACAAAACTTCGTGAAGGACAGATCGTTTGTGATATCAGAGAAAGGTGGCCTTGCAGACAGAATCAGCCCTGGCATCGTGAAATCCCTCGTCAGCGTTACAGATAAGCACAAGTAGGCGCCAGAGATAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGACAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGTTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACT TCATTTCAGGCGCAGTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCATACAAAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTAAACCTTTGACACCGCAATATTTGATGTTGCCCCAAAAAAAAAA]
[+] EMBL BI801022             [                                                                                                                                                                                                                                                                                                        ACAAGAAAGCTGTGCATCCACTGAAACGAAGCATCC TTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGTTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACT TCATTTCAGGCGCAGTTTTCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCATAC AAAGTTTGACCAGATGATAATACCCGGGGTTTTTTTAAAaa                                       ]
[+] EMBL AA750387             [                                                                                                                                                                                                                                                                                                                                                                            ACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTG TGATTAGTTTTTAGGCAACCTCTAATCCTATA TG TATGAA TG ATGACTAGG TAGGC ATTTGAC G ACTATCAgc                                                                                                                                                        ]




>consensus_8648#1
GGCGGAGTCATGCGCCCAAGGAAGACGCATGGGTCAAGGGTCGCAGGGTACGGGGGTGTG
GGGTAGGGTTCGTGGAGATGGATACCAGCCTGTTTTAGACAAAAGCGAAGGGCCACGGGC
TGGGACGGCAGGAACGCACAAAACTTCGTGAAGGACAGATCGTTTGTGATATCAGAGAAA
GGTGGCCTTGCAGACAGAATCAGCCCTGGCATCGTGAAATCCCTCGTCAGCGTTACAGAT
AAGCACAAGTAGGCGCCAGAGATAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGACAA
GAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGCT
ATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTCATT
CTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATATTGT
TATGAATTGTATGACTAGGTTAGGCTATATGACAGTACTTCATTTCAGGCGCAGTTTTCA
TAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCATACAAAAG
TTTGACCAGATGATAATACCCGGGGTTTTTTTAAACCTTTGACACCGCAATATTTGATGT
TGCCCCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8648#0      GACAGCCCTCCGGAAAAGAGCCAAGACAACCAAAACTAGTGTTCCGACCCCCTTTGAAAT 60
consensus_8648#1      ------------------------------------------------------------
                                                                                  

consensus_8648#0      CATAATGAAAGGGTTGGAAGGAACCTCTGGCAAGCAGCTGGTAAAGGAGATATGCCCAAC 120
consensus_8648#1      ------------------------------------------------------------
                                                                                  

consensus_8648#0      ATGTGGAGATCATGACCCCAAGGAAGATACATGG-TTAATGTTTCCAGGAT-CAGATATC 178
consensus_8648#1      -GGCGGAG-TCATGCGCCCAAGGAAGACGCATGGGTCAAGGGTCGCAGGGTACGGGGGTG 58
                        * **** *****  ***********  ***** * ** * *  **** * * *   * 

consensus_8648#0      TTTGCTCGTGTTCCATTTCATGTGGCCCACACTGTTCTAGACAAAGATCAAGAACGACTA 238
consensus_8648#1      TGGGGTAGGGTTCGTGGAGATGGATACCAGCCTGTTTTAGACAAAAGCGAAGGGCCAC-G 117
                      *  * * * ****      ***    ***  ***** ********    ***  * **  

consensus_8648#0      GACTATGACACCAAGAAGCTACAGAGCTTTGTGAAGGAGAAATCGTTTGTGATATCAGAG 298
consensus_8648#1      GGCTGGGACGGCAGGAACGCACAAAACTTCGTGAAGGACAGATCGTTTGTGATATCAGAG 177
                      * **  ***  ** ***   *** * *** ******** * *******************

consensus_8648#0      AAAGGTGCCCTTGCAGACAGAATCAGCCCCGGCATCGTGAAATCCCTCGTCAGCCTTACA 358
consensus_8648#1      AAAGGTGGCCTTGCAGACAGAATCAGCCCTGGCATCGTGAAATCCCTCGTCAGCGTTACA 237
                      ******* ********************* ************************ *****

consensus_8648#0      GATAAACCCAAGTAGGCACAAGAGAGAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGG 418
consensus_8648#1      GATAAGCACAAGTAGGCGCCAGAGATAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGA 297
                      ***** * ********* * ***** ********************************* 

consensus_8648#0      CAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGT 478
consensus_8648#1      CAAGAAAGCTGTGCATCCACTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGT 357
                      ************************************************************

consensus_8648#0      GCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTC 538
consensus_8648#1      GCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTGGCCCTGTTTTTCCGTGCTGTC 417
                      ************************************************************

consensus_8648#0      ATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATAT 598
consensus_8648#1      ATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATAT 477
                      ************************************************************

consensus_8648#0      TGTTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACTTCATTTCAGGCGCAGTTT 658
consensus_8648#1      TGTTATGAATTGTATGACTAGGTTAGGCTATATGACAGTACTTCATTTCAGGCGCAGTTT 537
                      ************************************************************

consensus_8648#0      TCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCTTACAA 718
consensus_8648#1      TCATAGGGAAGTCTGCTTCTGCATGTGCTAGTCGTTGATCTGAAAATTCAGGTCATACAA 597
                      ****************************************************** *****

consensus_8648#0      AAGTTTGACCAGATGATAATACCCGGGGTTTTTTTTAAACCT------------------ 760
consensus_8648#1      AAGTTTGACCAGATGATAATACCCGGGGTTTTTTTAAACCTTTGACACCGCAATATTTGA 657
                      *********************************** ** * *                  

consensus_8648#0      -------------------
consensus_8648#1      TGTTGCCCCAAAAAAAAAA 676