cluster # 8678

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Oryza sativa
cluster # 8678 cluster # 8678 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8678#0 length = 692 sequences # 2
consensus_8678#1 length = 624 sequences # 1

consensus_8678#2 length = 407 sequences # 1
consensus_8678#3 length = 374 sequences # 1

consensusID : consensus_8678#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 692
fasta sequence

                              [AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAAATGTCACCAACTTTCAAACCACAAATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCGGTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCTACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCTCTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCGGTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTCTGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCCCGCTTGAGAACGGCGGTGTCAACGGCGTCGCTTAAGGGAAGGAGAACTGTTG-GGC-CTCCCGTGCG--CCTG-ACCTGTGGGGGAACTCGCACCAACCCCTTCAATAAACTATTTTAGT-NCACAGTTTGATATGAGGTGGATGAATATGAGGGGCGC-AT-AAGGCGTCAAGGCT-GCTAGAGTCGTCAATTGTGTAAATTGCACCACGCGTNTGGTTCGTGTTCTCTTACGAAGTTACAAATATCAATACCGAACAAACCGATACAAATGGACGATGC]

[+] EMBL AW155405             [AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAAATGTCACCAACTTTCAAACCACAAATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCGGTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCTACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCTCTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCGGTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTCTGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCCCGCTTGAGAACGGCGGTGTCAACGGCGTCGCTTAAGGGAAGGAGAACTGTTG GGC CTCCCGTGCG  CCTG ACCTGTGGGGGAACTCGCACCAACCCCTTCAATAAACTATTTTAGT NCACAGTTTGATATGAGGTGGATGAATATGAGGGGCGC AT AAGGCGTCAAGGCT GCTAGAGTCGTCAATTGTGTAAATTGCACCACGCGTNTGGTTCGTGTTCTCTTACGAAGTTACAAATATCAATACCGAACAAACCGATACAAATGGACGATGC]
[+] EMBL AW155335             [AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAAATGTGACCAACTTTCAAACCACAAATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCGGTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCTACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCTCTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCGGTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTCTGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCCCGCTTGAGACCGGCCGTGTCAACGTCCTCCCTTAAGGGATGG GAAAT TTGTGGCTCTCCCCTGGGTCCCTGCACGTG GGGGGAACTCGCACCAACCCCTTCAAAAAGCTA TTTAGTCCCACAGTTTGATATGAGGTGGATGAATATGA AGGCGCAATAAAGGCGT AAGGCTGGCTAGAGTCG CAATTGTGTTAATCG AACACACGT TTGTTCGTTTT                                                       ]




>consensus_8678#0
AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAAATGTCACCAACTTTCAAACCACAA
ATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCG
GTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCT
ACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCT
CTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCG
GTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTC
TGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCC
CGCTTGAGAACGGCGGTGTCAACGGCGTCGCTTAAGGGAAGGAGAACTGTTGGGCCTCCC
GTGCGCCTGACCTGTGGGGGAACTCGCACCAACCCCTTCAATAAACTATTTTAGTNCACA
GTTTGATATGAGGTGGATGAATATGAGGGGCGCATAAGGCGTCAAGGCTGCTAGAGTCGT
CAATTGTGTAAATTGCACCACGCGTNTGGTTCGTGTTCTCTTACGAAGTTACAAATATCA
ATACCGAACAAACCGATACAAATGGACGATGC

consensusID : consensus_8678#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAGAGGGGACCAACTTTCANACCACAAATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCGGTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCTACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCTCTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCGGTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTCTGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGGTTTCTTGGAGAAGCGCCCGCTTGAGAACGGCGGTGCAACGGTATCCCTTAGGGCAAGGGACACGGTGGCCCCCCCTGGCTCCCAACCCGGGGGGAAACCGCACCAACCCCCTTAAATACCTATTTTAGTCGCACATTTGATTAAGGTGAAAAAATGAGGGCCCAAAAAGGCGTCAAGGCTGGTAGAGACTCAATTGAGTTCCGCAACCAGCGCTAGGTTGA]

[+] EMBL AW155324             [AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAGAGGGGACCAACTTTCANACCACAAATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCGGTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCTACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCTCTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCGGTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTCTGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGGTTTCTTGGAGAAGCGCCCGCTTGAGAACGGCGGTGCAACGGTATCCCTTAGGGCAAGGGACACGGTGGCCCCCCCTGGCTCCCAACCCGGGGGGAAACCGCACCAACCCCCTTAAATACCTATTTTAGTCGCACATTTGATTAAGGTGAAAAAATGAGGGCCCAAAAAGGCGTCAAGGCTGGTAGAGACTCAATTGAGTTCCGCAACCAGCGCTAGGTTGA]




>consensus_8678#1
AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAGAGGGGACCAACTTTCANACCACAA
ATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCG
GTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCT
ACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCT
CTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCG
GTGCCCTCATCAACGCCACTGCCACCCTCAGCTACAAGGGTTCGGCATACCTCGGTGCTC
TGATCTTTATGGCTACCTCTGCCCCTGGCTACATCTCGCAAGGTTTCTTGGAGAAGCGCC
CGCTTGAGAACGGCGGTGCAACGGTATCCCTTAGGGCAAGGGACACGGTGGCCCCCCCTG
GCTCCCAACCCGGGGGGAAACCGCACCAACCCCCTTAAATACCTATTTTAGTCGCACATT
TGATTAAGGTGAAAAAATGAGGGCCCAAAAAGGCGTCAAGGCTGGTAGAGACTCAATTGA
GTTCCGCAACCAGCGCTAGGTTGA

consensusID : consensus_8678#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence

                              [TGTCGGTGNCCTNATCAANGNCCCTNNCACCCTTCANNTNCNANGGTTCGGCATACCTNCGGTGCTCTGATTCTTTATGGCTACCTTNTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCCCGCTTGAGACCGTCGGTGTCAGCGTCGTCGCTAAGGTCATGGAGACTGTTGGCCTCGCCTGCGTCCTGACCTGGTGGGGAACTCGCACCAACCCCTTCGAATAAGCTATTTTAGTCGCACAGTTTGATATGAGGTGGATGAATATGAAGGCGCAATAAAGGCGTCAAGGCTGGCTAGAGTCGTCAATTGTGTTAATTGCAACCACGCGTTTTGTTTCGTTTTCTCTTACCGTAGTTCACAAATAATCAATACCGAAACAAACCAGATACCAAAAAAAA]

[+] EMBL AT003574             [TGTCGGTGNCCTNATCAANGNCCCTNNCACCCTTCANNTNCNANGGTTCGGCATACCTNCGGTGCTCTGATTCTTTATGGCTACCTTNTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAGAAGCGCCCGCTTGAGACCGTCGGTGTCAGCGTCGTCGCTAAGGTCATGGAGACTGTTGGCCTCGCCTGCGTCCTGACCTGGTGGGGAACTCGCACCAACCCCTTCGAATAAGCTATTTTAGTCGCACAGTTTGATATGAGGTGGATGAATATGAAGGCGCAATAAAGGCGTCAAGGCTGGCTAGAGTCGTCAATTGTGTTAATTGCAACCACGCGTTTTGTTTCGTTTTCTCTTACCGTAGTTCACAAATAATCAATACCGAAACAAACCAGATACCAAAAAAAA]




>consensus_8678#2
TGTCGGTGNCCTNATCAANGNCCCTNNCACCCTTCANNTNCNANGGTTCGGCATACCTNC
GGTGCTCTGATTCTTTATGGCTACCTTNTGCCCCTGGCTACATCTCGCAAGTCTTCTTGG
AGAAGCGCCCGCTTGAGACCGTCGGTGTCAGCGTCGTCGCTAAGGTCATGGAGACTGTTG
GCCTCGCCTGCGTCCTGACCTGGTGGGGAACTCGCACCAACCCCTTCGAATAAGCTATTT
TAGTCGCACAGTTTGATATGAGGTGGATGAATATGAAGGCGCAATAAAGGCGTCAAGGCT
GGCTAGAGTCGTCAATTGTGTTAATTGCAACCACGCGTTTTGTTTCGTTTTCTCTTACCG
TAGTTCACAAATAATCAATACCGAAACAAACCAGATACCAAAAAAAA

consensusID : consensus_8678#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [CCTNCCTTGGGTCGGGCCTTGTGNCTCNTTTNAGTTGATATAGGGGGTNNGAGTNNCCCTCATCNNACGCCACCCTNCGCNCCCCCANCTNCAANGGTTNGGCANNCCACGGNGCTCTGATCNTTANGGCCCACCTTATGCCCCTGGGTACATTTCNNAAGTNTTTTTNGAAAANNGNCCNCTTNAAACNGTCGGNGTCAGGGTNGTCGNTAAGGTCATGGANACTGTTGGCCTCGCCTGNGTCCTGACCTGGTGGGGAACTNGCNCCAACCCCTTNGAATAAANTNTTTTAGTCGCCCAGTTTTATATNAGGNGGCCCAATATNAAGGCNCNATNAAGGCGAAAAAAAAAAAAANAAANAAAAAAAAAAAAAA]

[+] EMBL AT003615             [CCTNCCTTGGGTCGGGCCTTGTGNCTCNTTTNAGTTGATATAGGGGGTNNGAGTNNCCCTCATCNNACGCCACCCTNCGCNCCCCCANCTNCAANGGTTNGGCANNCCACGGNGCTCTGATCNTTANGGCCCACCTTATGCCCCTGGGTACATTTCNNAAGTNTTTTTNGAAAANNGNCCNCTTNAAACNGTCGGNGTCAGGGTNGTCGNTAAGGTCATGGANACTGTTGGCCTCGCCTGNGTCCTGACCTGGTGGGGAACTNGCNCCAACCCCTTNGAATAAANTNTTTTAGTCGCCCAGTTTTATATNAGGNGGCCCAATATNAAGGCNCNATNAAGGCGAAAAAAAAAAAAANAAANAAAAAAAAAAAAAA]




>consensus_8678#3
CCTNCCTTGGGTCGGGCCTTGTGNCTCNTTTNAGTTGATATAGGGGGTNNGAGTNNCCCT
CATCNNACGCCACCCTNCGCNCCCCCANCTNCAANGGTTNGGCANNCCACGGNGCTCTGA
TCNTTANGGCCCACCTTATGCCCCTGGGTACATTTCNNAAGTNTTTTTNGAAAANNGNCC
NCTTNAAACNGTCGGNGTCAGGGTNGTCGNTAAGGTCATGGANACTGTTGGCCTCGCCTG
NGTCCTGACCTGGTGGGGAACTNGCNCCAACCCCTTNGAATAAANTNTTTTAGTCGCCCA
GTTTTATATNAGGNGGCCCAATATNAAGGCNCNATNAAGGCGAAAAAAAAAAAAANAAAN
AAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8678#0      AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAAATGTCACCAACTTTCAAACCACAA 60
consensus_8678#1      AACAAGTCGACTTGACTTCGCCAACGTTGCCAACAGAGGGGACCAACTTTCANACCACAA 60
consensus_8678#2      ------------------------------------------------------------
consensus_8678#3      ------------------------------------------------------------
                                                                                  

consensus_8678#0      ATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCG 120
consensus_8678#1      ATACATCCAAAATGTCTCTTCACTACCTCCCTCCCGTTAAGCCTTCGGCCATTGCCCTCG 120
consensus_8678#2      ------------------------------------------------------------
consensus_8678#3      ------------------------------------------------------------
                                                                                  

consensus_8678#0      GTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCT 180
consensus_8678#1      GTACCGTCTTTTGCCAGACTGCTGAGCTTGCCGTCCTCACCCCCATCTTTGGCGCTACCT 180
consensus_8678#2      ------------------------------------------------------------
consensus_8678#3      ------------------------------------------------------------
                                                                                  

consensus_8678#0      ACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCT 240
consensus_8678#1      ACAACCGCGCCAAGGCTGCCAACACTAAGGAGGAGTTCCTTCGCTCAAAGGAGGCCTCCT 240
consensus_8678#2      ------------------------------------------------------------
consensus_8678#3      ------------------------------------------------------------
                                                                                  

consensus_8678#0      CTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCG 300
consensus_8678#1      CTGCTGGAATTGCTTGGGGAACCTCGCTGGTCGGCTCTGCTCTTCAGTCGTATGGTGTCG 300
consensus_8678#2      -------------------------------------------------------TGTCG 5
consensus_8678#3      -------CCTNCCTTGGGTCGGGCCTTGTGNCTCNTTTNAGTTGATATAGGGGGTNNGAG 53
                                                                                 *

consensus_8678#0      GTGCCCTCATCAA-CGCCAC--TGCCACCCT-CAGCTACAAGGGTTCGGCATACCTC-GG 355
consensus_8678#1      GTGCCCTCATCAA-CGCCAC--TGCCACCCT-CAGCTACAAGGGTTCGGCATACCTC-GG 355
consensus_8678#2      GTGNCCTNATCAA-NGNCCC--TNNCACCCTTCANNTNCNANGGTTCGGCATACCTNCGG 62
consensus_8678#3      TNNCCCTCATCNNACGCCACCCTNCGCNCCCCCANCTNCAANGGTTNGGCANNCCAC-GG 112
                          *** ***    * * *  *     **  **  * * * **** ****  **   **

consensus_8678#0      TGCTCTGAT-CTTTATGGCTACCT-CTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAG 413
consensus_8678#1      TGCTCTGAT-CTTTATGGCTACCT-CTGCCCCTGGCTACATCTCGCAAGGTTTCTTGGAG 413
consensus_8678#2      TGCTCTGATTCTTTATGGCTACCTTNTGCCCCTGGCTACATCTCGCAAGTCTTCTTGGAG 122
consensus_8678#3      NGCTCTGATCNTTANGGCCCACCTTATGCCCCTGGGTACATTTCNNAAGTNTTTTTNGAA 172
                       ********  **   * * ****  ********* ***** **  ***  ** ** ** 

consensus_8678#0      AAGCGCCCGCTTGAGAACGGCGGTGTCAACGGCGTCGCTTAAGGGAAGGAGAACTGTTGG 473
consensus_8678#1      AAGCGCCCGCTTGAGAACGGCGGTG-CAACGGTATCCCTTAGGGCAAGGGACACGGT-GG 471
consensus_8678#2      AAGCGCCCGCTTGAGACCGTCGGTGTCAGCGTCGTCGCTAAGGTCATGGAG-ACTGTTGG 181
consensus_8678#3      AANNGNCCNCTTNAAACNGTCGGNGTCAGGGTNGTCGNTAAGGTCATGGAN-ACTGTTGG 231
                      **  * ** *** * *  * *** * **  *   **  * * *  * **   ** ** **

consensus_8678#0      GCCTCCCGTGCGCCTGACCTGTGGGGGAACTCGCACCAACCCCTTCAATAAA-CTATTTT 532
consensus_8678#1      CCCCCCCTGGCTCCCAACCCG-GGGGGAAACCGCACCAACCCCCTTAAATAC-CTATTTT 529
consensus_8678#2      CCTCGCCTGCGTCCTGACCTGGTGGGGAACTCGCACCAACCCCTTCGAATAAGCTATTTT 241
consensus_8678#3      CCTCGCCTGNGTCCTGACCTGGTGGGGAACTNGCNCCAACCCCTTNGAATAAANTNTTTT 291
                       *   **     **  *** *  ******   ** ******** *  *  *   * ****

consensus_8678#0      AGTNCACAG-TTTGATATGAGGTGGATGAATATGAGGGGCGCA-TAAGGCGTCAAGGCTG 590
consensus_8678#1      AGTCGCACA-TTTGAT-TAAGGTGAA--AAAATGAGGGCCCAA-AAAGGCGTCAAGGCTG 584
consensus_8678#2      AGTCGCACAGTTTGATATGAGGTGGATGAATATGAAGGCGCAATAAAGGCGTCAAGGCTG 301
consensus_8678#3      AGTCGCCCAGTTTTATATNAGGNGGCCCAATATNAAGGCNCNATNAAGGCGAAAAAAAAA 351
                      ***       *** ** * *** *    ** ** * **    *  ******  **     

consensus_8678#0      C-TAGAGTCGTCAATTGTGTAAATTGCACCAC-GCGTNTGGTT-CGTGTTCTCTTACGAA 647
consensus_8678#1      G-TAGAGAC-TCAATTGAGTT--CCGCAACCA-GCGCTAGGTT-GA-------------- 624
consensus_8678#2      GCTAGAGTCGTCAATTGTGTTAATTGCAACCACGCGTTTTGTTTCGTTTTCTCTTACCGT 361
consensus_8678#3      AAAANAAANAAAAAAAAAAAAAA------------------------------------- 374
                         * *      **                                              

consensus_8678#0      GTTACAAATATCAATACCGAACAAACCGATACAAATGGACGATGC- 692
consensus_8678#1      ----------------------------------------------
consensus_8678#2      AGTTCACAAATAATCAATACCGAAACAAACCAGATACCAAAAAAAA 407
consensus_8678#3      ----------------------------------------------