cluster # 8702

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Oryza sativa
cluster # 8702 cluster # 8702 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8702#0 length = 613 sequences # 3

consensus_8702#1 length = 591 sequences # 2

consensusID : consensus_8702#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 613
fasta sequence

                              [AACTTTGTTCGGAGCAGATCACATCGCCCATCTCTCTTGCAAGCCGCCAGATCCGATCACATCGATCGCTCTCTCGGGCTTGATGGCCGGCGTCGAGGTTTCTGTTTCCGTCTCCCCTACCAAGAAGAGAAAAGGGGAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCCTCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGCCCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTTCGCTGGTGCCCTCGCCGGAGGAGGAGGAGGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCGCAACTGCTTAGGGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGGAGTACGTTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGTGTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGGATCATCCTTCCGACACCGACGATGATGACGACGAAGACTGGAAGCTTTTCATTAGCGCAATTAGGAGGACCTTCGTCTGAATCGAA]

[+] EMBL OSS2593A             [AACTTTGTTCGGAGCAGATCACATCGCCCATCTCTCTTGCAAGCCGCCAGATCCGATCACATCGATCGCTCTCTCGGGCTTGATGGCCGGCGTCGAGGTTTCTGTTTCCGTCTCCCCTACCAAGAAGAGAAAAGGGGAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCCTCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGCCCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTTCGCTGGTGCCCTCGCCGGAGGAGGAGGAGGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCGCAACTGCTTAGGGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGGAGTACGTTCGGAAAGGATTC                                                                                                                                                                              ]
[+] EMBL OSS2789A             [AACTTTGTTCGGAGCAGATCACATCGCCCATCTCTCTTGCAAGCCGCCAGATCCGATCACATCGATCGCTCTCTCGGGCTTGATGGCCGGCGTCGAGGNTTCTGTTTCCGTCTCCCCTACCAAGAAGAGAAAAGGGGAGTNTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCCTCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGNCCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTT                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU101952             [                                                                                                                                                                                                                                                                                                                                                 ATGCTTCTTTACGCGTGCGTCCGCAACTGC TA GGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGC GAGTACGCTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGTGTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGGATCATCCTTCCGACACCGACGATGATGACGACGAAGACTGGAAGCTTTTCATTAGCGCAATTAGGAGGACCTTCGTCTGAATCGAA]




>consensus_8702#0
AACTTTGTTCGGAGCAGATCACATCGCCCATCTCTCTTGCAAGCCGCCAGATCCGATCAC
ATCGATCGCTCTCTCGGGCTTGATGGCCGGCGTCGAGGTTTCTGTTTCCGTCTCCCCTAC
CAAGAAGAGAAAAGGGGAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCC
TCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGC
CCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTTCGCT
GGTGCCCTCGCCGGAGGAGGAGGAGGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCG
CAACTGCTTAGGGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGGA
GTACGTTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGT
GTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGGATCATCCTTCCGA
CACCGACGATGATGACGACGAAGACTGGAAGCTTTTCATTAGCGCAATTAGGAGGACCTT
CGTCTGAATCGAA

consensusID : consensus_8702#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 591
fasta sequence

                              [GCCCTGGACGGAGGAGAGGACGATGCCCTGGCTCATCCATCAAAGAAGAAGAAGATGTGGCTGCTGCCCAAGGAGGAGGTGGACTGGATCCTCGCTCAGTGCAACGAGCCCATCTGCGCCAGGTTCCGGGAGCTGAAGCGCGCCAACCCGTCGCTGGTGCCGTCGCCGGAGGAGAAGGACGAGTGCACCATGCTTCTCTACGAGTGCACCCGCGAATCCTACGAGGACGAGGCTAAGTACGCCAAGTTCCAGGACTGGGTTCGGGGCGAGTACGCTCGCAAAGGATTTGTGGAGGTGGACTATGACTATTTCGCCAAGAGGGAGGAGGCCATTTGGCTGAACGAGGAAGCACGGGAGGAGGTTTTGGGGCACTGGTCAGACCGTCATCATCCTTCCCACACCGACCTTGACGATGAAGATTGGAAGCTTGTAAGATCAATTCTAGAACGATTTGATCAACGGTCCGCAATTTCCCGATTCAACAGAAGGAACTAAGCTTTTGTAGTGAACAAATCAATTCACCTCTGTATGATTCACTTTGTGCTTCCATTCTCTCTCTGGCAGAGAAATTATTTTGAAGTGTCATATGTT]

[+] EMBL CA766901             [GCCCTGGACGGAGGAGAGGACGATGCCCTGGCTCATCCATCAAAGAAGAAGAAGATGTGGCTGCTGCCCAAGGAGGAGGTGGACTGGATCCTCGCTCAGTGCAACGAGCCCATCTGCGCCAGGTTCCGGGAGCTGAAGCGCGCCAACCCGTCGCTGGTGCCGTCGCCGGAGGAGAAGGACGAGTGCACCATGCTTCTCTACGAGTGCACCCGCGAATCCTACGAGGACGAGGCTAAGTACGCCAAGTTCCAGGACTGGGTTCGGGGCGAGTACGCTCGCAAAGGATTTGTGGAGGTGGACTATGACTATTTCGCCAAGAGGGAGGAGGCCATTTGGCTGAACGAGGAAGCACGGGAGGAGGTTTTGGGGCACTGGTCAGACCGTCATCATCCTTCCCACACCGACCTTGACGATGAAGATTGGAAGCTTGTAAGATCAATTCTAGAACGATTTGATCAACGGTCCGCAATTTCCCGATTCAACAGAAGGAACTAAGCTTTTGTAGTGAACAAATCAATTCACCTCTGTATGATTCACTTTGTGCTTCCATTCTCTCTCTGGCAGAGAAATTATTTTGAAGTGTCATATGTT]
[-] EMBL CF297083             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTCCCGATTCAACAGAAGGAACTAAGCATAAAAAGTGAACAAATCAATTCACCTCTGTATGATTCACTTTGTGCTTCCATTCTCTCTCTGGCAGA                          ]




>consensus_8702#1
GCCCTGGACGGAGGAGAGGACGATGCCCTGGCTCATCCATCAAAGAAGAAGAAGATGTGG
CTGCTGCCCAAGGAGGAGGTGGACTGGATCCTCGCTCAGTGCAACGAGCCCATCTGCGCC
AGGTTCCGGGAGCTGAAGCGCGCCAACCCGTCGCTGGTGCCGTCGCCGGAGGAGAAGGAC
GAGTGCACCATGCTTCTCTACGAGTGCACCCGCGAATCCTACGAGGACGAGGCTAAGTAC
GCCAAGTTCCAGGACTGGGTTCGGGGCGAGTACGCTCGCAAAGGATTTGTGGAGGTGGAC
TATGACTATTTCGCCAAGAGGGAGGAGGCCATTTGGCTGAACGAGGAAGCACGGGAGGAG
GTTTTGGGGCACTGGTCAGACCGTCATCATCCTTCCCACACCGACCTTGACGATGAAGAT
TGGAAGCTTGTAAGATCAATTCTAGAACGATTTGATCAACGGTCCGCAATTTCCCGATTC
AACAGAAGGAACTAAGCTTTTGTAGTGAACAAATCAATTCACCTCTGTATGATTCACTTT
GTGCTTCCATTCTCTCTCTGGCAGAGAAATTATTTTGAAGTGTCATATGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8702#0      AACTTTGTTCGGAGCAGATCACATCGCCCATCTCTCTTGCAAGCCGCCAGATCCGATCAC 60
consensus_8702#1      ------------------------------------------------------------
                                                                                  

consensus_8702#0      ATCGATCGCTCTCTCGGGCTTGATGGCCGGCGTCGAGGTTTCTGTTTCCGTCTCCCCTAC 120
consensus_8702#1      ------------------------------------------------------------
                                                                                  

consensus_8702#0      CAAGAAGAGAAAAGGGGAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCC 180
consensus_8702#1      -------------------------GCCCTGGACGGAGGAGAGGACGATGCCCTGGCTCA 35
                                               ************************** ** **** 

consensus_8702#0      TCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGC 240
consensus_8702#1      TCCATCAAAGAAGAAGAAGATGTGGCTGCTGCCCAAGGAGGAGGTGGACTGGATCCTCGC 95
                      **** ****************************  *************************

consensus_8702#0      CCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTTCGCT 300
consensus_8702#1      TCAGTGCAACGAGCCCATCTGCGCCAGGTTCCGGGAGCTGAAGCGCGCCAACCCGTCGCT 155
                       ****  ********* **  * **  *************************** *****

consensus_8702#0      GGTGCCCTCGCCGGAGGAGGAGGAGGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCG 360
consensus_8702#1      GGTGCCGTCGCCGGAGGAGAAG---GACGAGTGCACCATGCTTCTCTACGAGTGCACCCG 212
                      ****** ************ **   ******* ************ **** ****  ***

consensus_8702#0      CAACTGCTTAGGGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGGA 420
consensus_8702#1      CGAATCCT--ACGAGGACGAGGCTAAGTACGCCAAGTTCCAGGACTGGGTTCGGGGCG-A 269
                      * * * **    ***** ***** **** **************  ******** **** *

consensus_8702#0      GTACGTTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGT 480
consensus_8702#1      GTACGCTCGCAAAGGATTTGTGGAGGTGGACTATGACTATTTCGCCAAGAGGGAGGAGGC 329
                      ***** *** ******** ************** ***** **** * ****** ***** 

consensus_8702#0      GTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGG---------ATCA 531
consensus_8702#1      CATTTGGCTGAACGAGGAAGCACGGGAGGAGGTTTTGGGGCACTGGTCAGACCGTCATCA 389
                        *  ********** ** **************  **** ******          ****

consensus_8702#0      TCCTTCCGACACCGAC---GATGATGACGAC--GAAGACTGGAAGCTTTTCATTAGCGCA 586
consensus_8702#1      TCCTTCCCACACCGACCTTGACGATGAAGATTGGAAGCTTGTAAGATCAATTCTAGAACG 449
                      ******* ********   ** ***** **   ****  ** *** *      ***  * 

consensus_8702#0      ATTAGGAGGACCTTCGTCTGAATCGAA--------------------------------- 613
consensus_8702#1      ATTTGATCAACGGTCCGCAATTTCCCGATTCAACAGAAGGAACTAAGCTTTTGTAGTGAA 509
                      *** *    **  **  *    **                                    

consensus_8702#0      ------------------------------------------------------------
consensus_8702#1      CAAATCAATTCACCTCTGTATGATTCACTTTGTGCTTCCATTCTCTCTCTGGCAGAGAAA 569
                                                                                  

consensus_8702#0      ----------------------
consensus_8702#1      TTATTTTGAAGTGTCATATGTT 591