cluster # 873

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Oryza sativa
cluster # 873 cluster # 873 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_873#0 length = 670 sequences # 1

consensus_873#1 length = 516 sequences # 1

consensusID : consensus_873#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [TTGCCGGGTTGGATCCTGTGTAGGGTCAAATGTAATGGCAATATCTATCTTACAGTCGCAGCTTCCTGCGTACATGCTACATAGTGCTGCAGCCCATGCAGGTGAGTTCTGTAAGGCAACAGTATAGCATAGGTGGCAACCCCCTTGTTGGCAACCAGCTGACGTTTCAAATTGGATAAACAAACCAAGTGCATGCAGCAGCAGTGGTTGGCCAAACAAGCTGCAGGCTGGGTGAGCACTTACATATGCTGCACTGACCAGGCCATTGAGTGATTGGTTCAAGCGATTGGTGGCAAACAGCTGACAGACTGGCAGCAATGTTGAGTGGTGGTGCTACTTTGATGCAGACTGCAAGCTGCAAGCCCAAACTGCTGGTGGGACCTGTGCAACTTGCCATGCCATGATGGTGGGTGATGCTGACCCTGAACTGACTATGAGTGGCTGCCCAGGGAGCATTGCCAACTGTTGGGTGGTGTGCTGGTACCTGGAATGTGGTGAACAATGATGAATGAGTTGCGTGATGGTTGAAAAATGAAAGTGCATGACATGCATGCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATTACATTATCGTAGCTAAAAAAAAAA]

[+] EMBL BI798382             [TTGCCGGGTTGGATCCTGTGTAGGGTCAAATGTAATGGCAATATCTATCTTACAGTCGCAGCTTCCTGCGTACATGCTACATAGTGCTGCAGCCCATGCAGGTGAGTTCTGTAAGGCAACAGTATAGCATAGGTGGCAACCCCCTTGTTGGCAACCAGCTGACGTTTCAAATTGGATAAACAAACCAAGTGCATGCAGCAGCAGTGGTTGGCCAAACAAGCTGCAGGCTGGGTGAGCACTTACATATGCTGCACTGACCAGGCCATTGAGTGATTGGTTCAAGCGATTGGTGGCAAACAGCTGACAGACTGGCAGCAATGTTGAGTGGTGGTGCTACTTTGATGCAGACTGCAAGCTGCAAGCCCAAACTGCTGGTGGGACCTGTGCAACTTGCCATGCCATGATGGTGGGTGATGCTGACCCTGAACTGACTATGAGTGGCTGCCCAGGGAGCATTGCCAACTGTTGGGTGGTGTGCTGGTACCTGGAATGTGGTGAACAATGATGAATGAGTTGCGTGATGGTTGAAAAATGAAAGTGCATGACATGCATGCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATTACATTATCGTAGCTAAAAAAAAAA]




>consensus_873#0
TTGCCGGGTTGGATCCTGTGTAGGGTCAAATGTAATGGCAATATCTATCTTACAGTCGCA
GCTTCCTGCGTACATGCTACATAGTGCTGCAGCCCATGCAGGTGAGTTCTGTAAGGCAAC
AGTATAGCATAGGTGGCAACCCCCTTGTTGGCAACCAGCTGACGTTTCAAATTGGATAAA
CAAACCAAGTGCATGCAGCAGCAGTGGTTGGCCAAACAAGCTGCAGGCTGGGTGAGCACT
TACATATGCTGCACTGACCAGGCCATTGAGTGATTGGTTCAAGCGATTGGTGGCAAACAG
CTGACAGACTGGCAGCAATGTTGAGTGGTGGTGCTACTTTGATGCAGACTGCAAGCTGCA
AGCCCAAACTGCTGGTGGGACCTGTGCAACTTGCCATGCCATGATGGTGGGTGATGCTGA
CCCTGAACTGACTATGAGTGGCTGCCCAGGGAGCATTGCCAACTGTTGGGTGGTGTGCTG
GTACCTGGAATGTGGTGAACAATGATGAATGAGTTGCGTGATGGTTGAAAAATGAAAGTG
CATGACATGCATGCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATC
ATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATTACATTATCGTAGCT
AAAAAAAAAA

consensusID : consensus_873#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [ATTGATTCTTAAGCACATTATAGCATATGCAACCCCCTTCTGCAACCACTACGTTTCAATTGATAAACACCAAGTCATGCACACAGTGTTCCAACAGCTCAGTCTGGTACCACAACAATCTCACTACCAGGCCATTAGTATTGTTCAAGCGATTGTGGCAACAGCTACAAACTGCAGCATTTGAGTGGGTGGTCTGACTGTGTGATAGACTGCAAGCTCAAGCCCAACTCTGTTGGACCTGTGCAACTTGCCATCCATGATGTGGGTGATGCTGACCCTGAACTGACTGATGAGTGCTGCCCAGGAGCATTGCCCCTGTGTTGGGTGGTGTGCTGGTGACTGGATATTGTAACAATGATGAATGAGTTGCGTGATGGTTAAAAATGAAAGTGCATACATCATCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATGACATTATCGTAGCTAATTACC]

[+] EMBL BI802051             [ATTGATTCTTAAGCACATTATAGCATATGCAACCCCCTTCTGCAACCACTACGTTTCAATTGATAAACACCAAGTCATGCACACAGTGTTCCAACAGCTCAGTCTGGTACCACAACAATCTCACTACCAGGCCATTAGTATTGTTCAAGCGATTGTGGCAACAGCTACAAACTGCAGCATTTGAGTGGGTGGTCTGACTGTGTGATAGACTGCAAGCTCAAGCCCAACTCTGTTGGACCTGTGCAACTTGCCATCCATGATGTGGGTGATGCTGACCCTGAACTGACTGATGAGTGCTGCCCAGGAGCATTGCCCCTGTGTTGGGTGGTGTGCTGGTGACTGGATATTGTAACAATGATGAATGAGTTGCGTGATGGTTAAAAATGAAAGTGCATACATCATCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATGACATTATCGTAGCTAATTACC]




>consensus_873#1
ATTGATTCTTAAGCACATTATAGCATATGCAACCCCCTTCTGCAACCACTACGTTTCAAT
TGATAAACACCAAGTCATGCACACAGTGTTCCAACAGCTCAGTCTGGTACCACAACAATC
TCACTACCAGGCCATTAGTATTGTTCAAGCGATTGTGGCAACAGCTACAAACTGCAGCAT
TTGAGTGGGTGGTCTGACTGTGTGATAGACTGCAAGCTCAAGCCCAACTCTGTTGGACCT
GTGCAACTTGCCATCCATGATGTGGGTGATGCTGACCCTGAACTGACTGATGAGTGCTGC
CCAGGAGCATTGCCCCTGTGTTGGGTGGTGTGCTGGTGACTGGATATTGTAACAATGATG
AATGAGTTGCGTGATGGTTAAAAATGAAAGTGCATACATCATCATGTGTGACTGTTGAAA
CTTAGGGTCATATAAATCTAAATAAAATCATCTTACCTATTTAAATAGCATTCCTCTATG
AGGATAAATCCTATGACATTATCGTAGCTAATTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_873#0      TTGCCGGGTTGGATCCTGTGTAGGGTCAAATGTAATGGCAATATCTATCTTACAGTCGCA 60
consensus_873#1      ------------------------------------------------------------
                                                                                 

consensus_873#0      GCTTCCTGCGTACATGCTACATAGTGCTGCAGCCCATGCAGGTGAGTTCTGTAAGGCAAC 120
consensus_873#1      -----------------------------------------ATTGATTCT-TAAGC--AC 16
                                                               *   **** ****   **

consensus_873#0      AGTATAGCATAGGTGGCAACCCCCTTGTTGGCAACCAGCTGACGTTTCAAATTGGATAAA 180
consensus_873#1      ATTATAGCATAT---GCAACCCCCTTCT--GCAACCACT--ACGTTTCAATT--GATAAA 67
                     * *********    *********** *  *******    ********* *  ******

consensus_873#0      CAAACCAAGTGCATGCAGCAGCAGTGGTTGGCCAAACAAGCTGCAGGCTGGGTGAGCACT 240
consensus_873#1      CA--CCAAGT-CATGCA--CACAGTGTT---CCAA--CAGCT-CAGTCTG-----GTACC 111
                     **  ****** ******    ***** *   ****   **** *** ***     * ** 

consensus_873#0      TACATATGCTGCACTGACCAGGCCATTGAGTGATTGGTTCAAGCGATTGGTGGCAAACAG 300
consensus_873#1      -ACAACAATCTCACT-ACCAGGCCATT-AGTATT--GTTCAAGCGATTG-TGGCAA-CAG 164
                      ***       **** *********** ***  *  ************* ****** ***

consensus_873#0      CTGACAGACTGGCAGCAATGTTGAGTGG-TGGTGCTACTTTGATGCAGACTGCAAGCTGC 359
consensus_873#1      CT-ACAAACTG-CAGCATT--TGAGTGGGTGGTCTGACTGTGTGATAGACTGCAAGCT-C 219
                     ** *** **** ***** *  ******* ****   *** **    ************ *

consensus_873#0      AAGCCCAAACTGCTGGTGGGACCTGTGCAACTTGCCATGCCATGATGGTGGGTGATGCTG 419
consensus_873#1      AAGCCCAACTC---TGTTGGACCTGTGCAACTTGCCAT-CCATGATG-TGGGTGATGCTG 274
                     ********       ** ******************** ******** ************

consensus_873#0      ACCCTGAACTGACT-ATGAGTGGCTGCCCAGGGAGCATTGCCAAC-TGTTGGGTGGTGTG 477
consensus_873#1      ACCCTGAACTGACTGATGAGTG-CTGCCCAGG-AGCATTGCCCCTGTGTTGGGTGGTGTG 332
                     ************** ******* ********* *********    **************

consensus_873#0      CTGGTACCTGGAATGTGGTGAACAATGATGAATGAGTTGCGTGATGGTTGAAAAATGAAA 537
consensus_873#1      CTGGTGACTGGA-TATTGT-AACAATGATGAATGAGTTGCGTGATGGTT-AAAAATGAAA 389
                     *****  ***** * * ** ***************************** **********

consensus_873#0      GTGCATGACATGCATGCATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAA 597
consensus_873#1      GTGCAT-ACAT-CAT-CATGTGTGACTGTTGAAACTTAGGGTCATATAAATCTAAATAAA 446
                     ****** **** *** ********************************************

consensus_873#0      ATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATTACATTATCGTA 657
consensus_873#1      ATCATCTTACCTATTTAAATAGCATTCCTCTATGAGGATAAATCCTATGACATTATCGTA 506
                     ************************************************ ***********

consensus_873#0      GCTAAAAAAAAAA 670
consensus_873#1      GCTAATTACC--- 516
                     *****  *